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1 dsDNA library preparations, however, are insensitive to
3 e activity, but confers on hEXOG a strong 5'-dsDNA exonuclease activity that precisely excises a dinu
5 mined with the replication proteins bound, a dsDNA loop was frequently associated with the replicatio
6 rands: they make one of the two strands of a dsDNA accessible for hybridization to a probe, and they
7 the recombinase to selectively use abundant dsDNA substrate present during post-irradiation recovery
10 of the surveillance complex before and after dsDNA binding, or in complex with three virally encoded
11 ens secretion induced autoantibodies against dsDNA and heat shock protein 60 as well as antibody accu
13 agosomal membrane permeabilization, allowing dsDNA and IgG to leak into the cytosol and activate AIM2
15 references that differ for G4 disruption and dsDNA unwinding, most likely arising from differences in
17 us recombination between the host genome and dsDNA donor molecules, stimulated by the induction of ch
18 Here, we apply paired metaproteomics and dsDNA-targeted metagenomics to identify 1,875 virion-ass
22 us contacts can occur between long ssRNA and dsDNA in the absence of protein and that these contacts
24 fect on systemic autoantibodies such as anti-dsDNA Abs or disease in other organs such as kidneys, lu
26 and NZM2328.DR3(+)AE(0) mice developed anti-dsDNA and glomerulonephritis, but anti-dsDNA titers were
27 s of these alloreactive cells developed anti-dsDNA autoantibodies starting at week 2 as expected, wit
29 ristane-treated WT mice showed elevated anti-dsDNA, anti-snRNP, CXCL1, and MCP-1 levels compared to u
33 erent renal antigens, ii) the impact of anti-dsDNA antibodies targeting exposed chromatin in glomerul
34 to specifically inhibit the binding of anti-dsDNA antibodies to target antigens such as dsDNA and pe
35 ls had BLK genotype-dependent levels of anti-dsDNA IgG Abs as well as increased numbers of a B1-like
36 ils, monocytes, and ECs with aPL-IgG or anti-dsDNA-IgG antibodies deregulated microRNAs expression, a
39 The nanobiosensors AuDE/SAM/rGO/Fe2Ni@Au/dsDNA were then subjected to the action of a model chemo
40 eosome is passively transferred to available dsDNA as predicted by a simple physical model of DNA loo
41 degrading activity, providing a link between dsDNA degradation and nucleic acid-mediated autoimmune d
42 nd IFN-gamma-inducible protein (IFI)16, bind dsDNA and form caspase-1-activating inflammasomes that a
43 ility to oligomerize is critical for binding dsDNA, and in turn permits the size of dsDNA to regulate
46 205 revealed that inflammasome activation by dsDNA, as well as ligands that engage the NLRP3 inflamma
47 Examination of immune responses induced by dsDNA and other microbial ligands in bone marrow-derived
48 ltiple single-stranded segments separated by dsDNA segments 500 to 1,000 nucleotides in length locate
49 rent affinity matches that for its canonical dsDNA ligand, suggesting a biological role for RNA bindi
52 and ISKpn21 Using the resistance of circular dsDNA molecules to exonuclease, internally calibrated wi
53 A substrates, we observed that SbcCD cleaved dsDNA using this activity when the substrate was 110 bp
55 spontaneously occurred between the confined dsDNAs on the nanoparticles' surface in the second AND g
56 imited by the diffusion of the MB-conjugated dsDNA providing the robust "off-on" nanomolar DNA sensin
58 or promotes the enzyme's capacity to degrade dsDNA in conjunction with BLM or WRN and thus promote th
59 n the past decades, all involving denaturing dsDNA and hybridizing fluorescent nucleic acid probes.
62 of the DNA frame, we created four different dsDNA substrates containing torsion-ally constrained or
66 pression protects against double-strand DNA (dsDNA)-damaging events, and show that this protective fu
68 antibodies specific for double-stranded DNA (dsDNA) activated plasmacytoid dendritic cells (pDCs), a
70 : i) the impact of anti-double-stranded DNA (dsDNA) antibodies that cross-react with inherent renal a
74 cted repair (HDR) after double-stranded DNA (dsDNA) cleavage facilitates functional genomic research
75 emonstrate that, unlike double-stranded DNA (dsDNA) donors with central heterologies, ODNs generated
76 conformational state of double stranded DNA (dsDNA) following its interaction with unlabelled protein
77 een the release of host double-stranded DNA (dsDNA) following rhinovirus infection and the exacerbati
79 Translocation of viral double-stranded DNA (dsDNA) into the icosahedral prohead shell is catalyzed b
80 autoantibodies against double-stranded DNA (dsDNA) is used in the diagnosis of Systemic Lupus Erythe
84 n spCas9-sgRNA-mediated double-stranded DNA (dsDNA) recognition and cleavage, it is still unclear how
85 recognition of specific double-stranded DNA (dsDNA) regions has been a longstanding goal as evidenced
87 was dependent upon the double-stranded DNA (dsDNA) sensor cyclic GMP-AMP synthase (cGAS), the innate
88 ssociation of Cas9 from double-stranded DNA (dsDNA) substrates is slow (lifetime approximately 6 h) b
89 otein filament (NPF) on double-stranded DNA (dsDNA) that is capable of unwrapping the nucleosomal DNA
90 t the binding of target double-stranded DNA (dsDNA) to a type I-F CRISPR system yersinia (Csy) survei
92 or proteins that unwind double-stranded DNA (dsDNA) to reveal single-stranded DNA (ssDNA) needed for
93 mplete 70.8-kb circular double-stranded DNA (dsDNA) viral genome content, and identification of its c
95 re, we use quantitative double-stranded DNA (dsDNA) viral-fraction metagenomes (viromes) and whole vi
96 Bacteriophage P22, a double-stranded DNA (dsDNA) virus, has a nonconserved 124-amino-acid accessor
97 infection with certain double-stranded DNA (dsDNA) viruses after allogeneic hematopoietic cell trans
98 n adenoviruses (Ad) are double-stranded DNA (dsDNA) viruses associated with infectious diseases, but
101 lity to directly detect double-stranded DNA (dsDNA) without sequence-preference continues to be a maj
102 les functionalized with double-stranded DNA (dsDNA), a sequence of the breast cancer gene BRCA1.
105 on between the rates of double-stranded DNA (dsDNA), single-stranded RNA (ssRNA), and ssDNA/reverse-t
106 e ssDNA with homologous double-stranded DNA (dsDNA), which serves as the template to guide DSB repair
107 mechanism of the viral double-stranded DNA (dsDNA)-packaging motor with sequential one-way revolving
113 ase of the AuNPs-S2 from double-stranded DNA(dsDNA) and the recovery of the ECL signal of QDs (second
114 d DNA-ssDNA) and hybrid (double stranded DNA-dsDNA) both via 3-NT reduction and guanine oxidation sig
115 ional activities and variability of dominant dsDNA viruses in the open ocean's euphotic zone over dai
116 or the specific recognition of target dsDNA (dsDNA-T), which in turn leads to the formation of a high
117 the TREX1 D18N enzyme exhibits dysfunctional dsDNA-degrading activity, providing a link between dsDNA
119 us, NETosis and its associated extracellular dsDNA contribute to the pathogenesis and may represent p
121 the impact of relative antibody avidity for dsDNA, chromatin fragments, or cross-reacting antigens.
125 dividual, torsionally constrained, nick-free dsDNA molecules, we measured the contour lengths and mol
126 in vivo is to unwind the excised 13-mer from dsDNA and that mutation of uvrD results in remarkable pr
131 hydrolysis is present, flanking heterologous dsDNA regions increase the reversibility of sequence mat
132 , inverse strand exchange between homologous dsDNA and RNA is a distinctive activity of Rad52; neithe
133 w propose that, in somatic cells, homologous dsDNA-dsDNA interactions between a small number of repea
134 RNA and ssDNA viruses recombining with host dsDNA genomes and, more surprisingly, RNA virus genes re
137 insic stiffness decreased in hypermethylated dsDNA, pointing at structural compaction which may facil
138 pair parameter and its different behavior in dsDNA and dsRNA traced down to changes in the sugar puck
140 GQ formation is substantially diminished in dsDNA, likely due to the competition from the Watson-Cri
142 y, is strikingly similar to that observed in dsDNA viruses of the PRD1-adenovirus lineage, characteri
146 e programmed with a guide RNA, do not induce dsDNA breaks, and mediate the direct conversion of cytid
147 encoded anti-CRISPR suppressors that inhibit dsDNA binding, reveals mechanistic details underlying ta
149 d normal cells in response to cell-intrinsic dsDNA sensing dependent upon cGAS-STING.IMPORTANCE By an
151 DEP sorting of 1.0, 10.2, 19.5, and 48.5 kbp dsDNA analytes, including both plasmid and genomic DNA.
153 the genome, an unusual occurrence for large dsDNA viruses.IMPORTANCE Unlike all other DNA viruses, a
154 Phycodnaviruses are algae-infecting large dsDNA viruses that are widely distributed in aquatic env
155 lga Emiliania huxleyi and its specific large dsDNA virus (EhV) is a major factor determining the fate
156 smaller type II-C Cas9 proteins have limited dsDNA binding and unwinding activity and promiscuous gui
158 gest that SbcCD processes hairpin and linear dsDNA ends with this novel DNA end-dependent binary endo
159 in general and more specifically for linear dsDNA; equations are derived linking the measured acoust
160 ng electron microscopy revealed long, linear dsDNAs, and in 87%, one end, presumably the end with the
161 de multiple parallel collisions between long dsDNA molecules, and find that those additional interact
162 long ssRNA interacts paranemically with long dsDNA via periodic short homologous interactions, e.g. m
166 opose a distinctive model wherein RecQ melts dsDNA internally to initiate unwinding and subsequently
170 erm persistence (>1 y) was the rule for most dsDNA viruses observed, suggesting that both core viral
172 pseudorabies virus (PRV), are neuroinvasive dsDNA viruses that establish life-long latency in periph
174 hese investigations establish a global ocean dsDNA viromic data set with analyses supporting the seed
175 endogenous DNA could explain the absence of dsDNA-reactive autoantibodies in DKO mice, we used a nov
177 sca type I-E Cascade: (1) unwinding 11 bp of dsDNA at the seed-sequence region to scout for sequence
179 g with 18 ligands of various combinations of dsDNA and ssDNA regions, which mimicked different DELSMs
182 We determine all of the elastic constants of dsDNA and dsRNA and provide an explanation for three str
184 or the direct, highly sensitive detection of dsDNA based on the strand replacement of dsDNA by peptid
187 e presence of ssRNA impedes the extension of dsDNA, specifically at low forces, dependent on homology
190 e much longer than the persistence length of dsDNA, so we extended the model to include multiple para
192 electrochemical signal and the logarithm of dsDNA-T concentration over the range from 1.0 fM to 1.0n
193 simulations spanning several microseconds of dsDNA packing inside nanometer-sized viral capsids.
194 the measured acoustic ratio to the number of dsDNA base pairs for two acoustic sensors, the QCM and L
198 g strategy for mixed-sequence recognition of dsDNA targets for applications in molecular biology and
199 NHEJ proteins in the mechanism of repair of dsDNA breaks, but interpretations can be confounded by o
200 of dsDNA based on the strand replacement of dsDNA by peptide nucleic acid (PNA) and the in situ grow
202 nding dsDNA, and in turn permits the size of dsDNA to regulate the assembly of the AIM2 polymers.
203 ecular dynamics to simulate the structure of dsDNA and dsRNA subjected to stretching forces up to 20
204 l dsDNA-packaging motors, including those of dsDNA/dsRNA bacteriophages, adenoviruses, poxviruses, he
205 rt the cryo-EM structure of the Mcm2-7 DH on dsDNA and show that the DNA is zigzagged inside the cent
208 estimulation of primary TEC with IFNalpha or dsDNA did not hamper replication of BKV, whereas influen
212 ot of a hexameric helicase binding to origin dsDNA, and suggests a possible mechanism of origin melti
214 ith the corresponding aptamer of the partial dsDNA probes and liberates single stranded initiation se
217 e to the strand replacement of dsDNA by PNA, dsDNA can be directly detected without sequence-preferen
219 egrates with BLM or WRN helicases to promote dsDNA degradation by forming a heterodimeric molecular m
221 s is consistent with the previously proposed dsDNA genome-capsid coassembly for adenoviruses, which r
222 om the well-established mechanism of pumping dsDNA into a preformed protein capsid exemplified by tai
227 ated that cGAS and Ifi204 cooperate to sense dsDNA and activate the STING-dependent type I IFN pathwa
229 obes, which are activated for mixed-sequence dsDNA-recognition through the introduction of pseudocomp
230 Type I CRISPR systems feature a sequential dsDNA target searching and degradation process, by crRNA
233 onjugate between short double-strand DNA (sh-dsDNA) and human methyl binding domain protein 1 (MBD1).
239 mulation, a fused pol Sdbh with non-specific dsDNA binding protein Sso7d in the N-terminus was design
240 ection probe containing three scCro-specific dsDNA binding sites, we demonstrate an improvement by ov
241 We show that CST binds preferentially to ss-dsDNA junctions, an activity that can explain the increm
242 t the binding to single-stranded DNA (ssDNA)/dsDNA junctions is dependent on joint binding to the DNA
244 NA overhang, where it localized to the ssDNA-dsDNA junction and efficiently blocked resection by Exo1
245 CC1-XPF heterodimer jointly bind to an ssDNA/dsDNA substrate and, thereby, at least partially dictate
247 in, aptamer/FAM-labeled complementary strand dsDNA is stable, resulting in the aggregation of AuNPs b
248 ng a DNA replication fork with streptavidin (dsDNA end) and Fab (5' ssDNA) we located the positions o
249 rface for the specific recognition of target dsDNA (dsDNA-T), which in turn leads to the formation of
250 y necessary in the pathway leading to target dsDNA degradation by a trans-acting helicase-nuclease.
251 leads to gradual shortening of the telomeric dsDNA, similar to that observed in cells lacking telomer
253 olecular tension on E-cadherin is lower than dsDNA unzipping force (nominal value: 12 pN) during init
254 iated by RNA/DNA triplex-formation, and that dsDNA extension is impeded by formation of RNA secondary
265 tion was used to hydrolyze the 3'-end of the dsDNA after the recognition of target AFB1, which caused
266 ts decreases rapidly after saturation of the dsDNA population, suggesting a reduction in interaction
267 reactive species within the vicinity of the dsDNA, is likely to play an important role in ensuring t
271 arrangement of protein-binding sites on the dsDNA, an irregular bulk nanoparticle or a nanowire with
275 tous contamination, similar in appearance to dsDNA, in eluates from the Zymo, Qiagen, and ChargeSwitc
276 activation, production of autoantibodies to dsDNA, and deposition of immune complexes in the kidney.
277 ropose that the HhH domain of ERCC1 binds to dsDNA upstream of the damage, and XPF binds to the non-d
279 or-ligated oligonucleotides are converted to dsDNA with an appropriate translesion DNA synthesis (TLS
280 to lupus in humans, and these data point to dsDNA as a key substrate for TREX1 and a major antigen s
281 iated adjuvanicity was ascribed primarily to dsDNA and other "danger" signals released from laser-dam
286 the uninfected cell proteome in response to dsDNA, potentially impacting responses to DNA vaccines,
287 FRET, we show that AID binds to transcribed dsDNA and translocates unidirectionally in concert with
288 , we show that rhinovirus infection triggers dsDNA release associated with the formation of neutrophi
289 emical and genetic analyses to show that two dsDNA binding sites set the 5'polarity and to reveal une
294 Herein, we review the structures of viral dsDNA-packaging motors, the stoichiometries of motor com
295 evaded precise description, since the viral dsDNA molecule condensed by proteins (core) lacks icosah
297 xchange, in which Rad52 forms a complex with dsDNA and promotes strand exchange with homologous ssRNA
300 ed proteins in uninfected cells treated with dsDNA was prevented by expressing the HCMV multifunction
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