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1 n this tRNA were tested for their effects on endonucleolytic 3'-end processing and CCA addition at th
2 y inactive mutant of the enzyme showing that endonucleolytic ability of the protein is dispensable fo
4 ubstitutions at Lys301, which is part of the endonucleolytic active site, eliminate binding to the cl
8 We show that WH is able to modulate FEN1's endonucleolytic activities depending on the substrate DN
10 presence of both 5'-to-3' exonucleolytic and endonucleolytic activities on the Bacillus subtilis thrS
11 a negative regulatory effect on the Artemis endonucleolytic activities, and phosphorylation by DNA-P
12 lation sites still retain DNA-PKcs-dependent endonucleolytic activities, indicating that basal phosph
14 In addition to known disparities in their endonucleolytic activity [13, 14], the four Ago proteins
15 sequence that can act as a substrate for Rep endonucleolytic activity [terminal resolution site (TRS)
16 e the presence of cysteine proteases for its endonucleolytic activity and that the cysteine proteases
17 sociates with human FEN-1 and stimulates its endonucleolytic activity at branched DNA structures and
18 n generates a mutant RNase III with impaired endonucleolytic activity but without blocking its abilit
20 apoptotic nuclear collapse requires a 3'-OH endonucleolytic activity even though the internucleosoma
21 virus terminase complex, pUL89, provides the endonucleolytic activity for genome cleavage, and the do
23 etely inactive in vitro, whereas it exhibits endonucleolytic activity in the context of FL-L-terminas
25 and 3'-DNA overhangs of duplex DNA, and this endonucleolytic activity is dependent upon DNA-PKcs.
27 ucleolytic activity of FEN-1 in terms of its endonucleolytic activity is proposed based on these obse
32 ibly through activation or regulation of the endonucleolytic activity of the N-terminal domain of XPF
34 phosphorylates Artemis, and Artemis acquires endonucleolytic activity on 5' and 3' overhangs, as well
35 -->3'exodeoxyribonuclease that also exhibits endonucleolytic activity on flap structures (branched du
36 nated with 5' monophosphorylated thrS, while endonucleolytic activity predominated with 5' triphospho
38 extracts prepared from MEL cells contain an endonucleolytic activity that generates decay products c
39 d1 complex, was recently found to possess an endonucleolytic activity that incises on the 5' side of
41 , correlating with the predominance of hFEN1 endonucleolytic activity versus hEXO1 exonucleolytic act
42 In soluble extracts, most (80 to 90%) of the endonucleolytic activity was due to RNases I and I*, sin
57 inimal effect on RNase H activity, retaining endonucleolytic and directed cleavage of an RNA/DNA hybr
58 nd repair flap endonucleases (FENs) catalyze endonucleolytic and exonucleolytic (EXO) DNA hydrolyses.
59 Here we show that hMRN catalyzes sequential endonucleolytic and exonucleolytic activities on both 5'
60 ats in the course of replication, relying on endonucleolytic and exonucleolytic activities, respectiv
62 ism for the coordination of the proteolytic, endonucleolytic, and morphogenetic aspects of apoptosis.
63 hen bound to the mRNA, shields the mRNA from endonucleolytic attack and thereby prolongs the mRNA hal
66 rate anti-RNase E monoclonal antibodies; the endonucleolytic cleavage activity co-purified with the i
69 acterial RNA polymerase exhibit an intrinsic endonucleolytic cleavage activity that restores the hybr
74 protein demonstrated a high selectivity for endonucleolytic cleavage at abasic sites in DNA, a prope
75 otein-free and Argonaute 2-loaded miRNAs via endonucleolytic cleavage at CA and UA dinucleotides, pre
76 here that the degradation petD mRNA involves endonucleolytic cleavage at specific sites upstream of t
77 II and gains access to the nascent RNA after endonucleolytic cleavage at the poly(A) site or at a sec
78 whereby the downstream products of RNase J1 endonucleolytic cleavage become substrates for the 5' to
79 or residues were removed from the 3' end by endonucleolytic cleavage before polymerization began.
86 a catalytic riboswitch that is activated for endonucleolytic cleavage by the coenzyme glucosamine-6-p
87 osome fragmentation, which was distinct from endonucleolytic cleavage commonly associated with apopto
88 ere that 3'-end processing in vitro involves endonucleolytic cleavage downstream from the mature term
89 me-mediated beta-elimination reaction, or by endonucleolytic cleavage downstream of the baseless suga
91 generated from the 3'-extended precursors by endonucleolytic cleavage followed by exonucleolytic trim
92 of most eukaryotic mRNAs are produced by an endonucleolytic cleavage followed by synthesis of a poly
93 quires processing of their 3'UTRs through an endonucleolytic cleavage guided by the U7 snRNA, which i
94 ing of histone pre-mRNA requires a single 3' endonucleolytic cleavage guided by the U7 snRNP that bin
95 degradation in Escherichia coli begins with endonucleolytic cleavage has been challenged by the rece
96 ivity and a potential consensus sequence for endonucleolytic cleavage identified, the structures of t
97 ccharomyces cerevisiae promote site-specific endonucleolytic cleavage in 25S ribosomal RNA (rRNA) adj
98 sults highlight the underappreciated role of endonucleolytic cleavage in controlling mRNA fates in ma
100 In contrast, Nop4, a protein required for endonucleolytic cleavage in ITS1, binds the pre-rRNA nea
101 ort a systematic study of small RNA-mediated endonucleolytic cleavage in mouse through integrative an
103 histone genes undergo efficient and faithful endonucleolytic cleavage in nuclear extracts prepared fr
105 Our previous studies demonstrated that the endonucleolytic cleavage is catalyzed by the cleavage/po
110 which the primer has an unannealed 5'-tail, endonucleolytic cleavage near the annealing point releas
113 of blunt-ended duplex DNA substrates and the endonucleolytic cleavage of 5'-bifurcated nucleic acids
114 ine or histidine in lieu of Tyr-274 catalyze endonucleolytic cleavage of a 60 bp duplex DNA at the CC
115 ologous oligonucleotides that originate from endonucleolytic cleavage of cellular mRNA during the pro
116 ntation during apoptosis is characterized by endonucleolytic cleavage of chromosomal DNA into an olig
119 A conserved response to stress involves endonucleolytic cleavage of cytoplasmic transfer RNAs (t
124 tro, the same protein is responsible for the endonucleolytic cleavage of histone pre-mRNA and the sub
130 ion factor, X-box-binding protein 1, through endonucleolytic cleavage of its messenger RNA (mRNA).
131 the fact that most miRNAs are generated from endonucleolytic cleavage of longer transcripts, this fin
134 with the C terminus of Rpb1 and catalyze the endonucleolytic cleavage of nascent snRNAs near their 3'
135 tion of the 3' end of histone mRNA occurs by endonucleolytic cleavage of pre-mRNA releasing the matur
136 x is a group of proteins responsible for the endonucleolytic cleavage of primary small nuclear RNA (s
137 ation for the influence of 5' termini on the endonucleolytic cleavage of primary transcripts, which a
138 roL The terminator fragment derived from the endonucleolytic cleavage of proL transcript is degraded
139 RNA group I intron catalyzes a site-specific endonucleolytic cleavage of RNA, DNA, and chimeric RNA/D
140 ucleotides (PAMmers) stimulate site-specific endonucleolytic cleavage of ssRNA targets, similar to PA
141 miRNAs and other small RNAs that direct endonucleolytic cleavage of target mRNAs produce diagnos
142 n are well appreciated, their involvement in endonucleolytic cleavage of target RNAs is poorly unders
143 lear RNA by PB2, which then usually leads to endonucleolytic cleavage of the capped primer 13 nucleot
144 f Escherichia coli adhesins, is regulated by endonucleolytic cleavage of the daaABCDPE primary transc
147 reactivates arrested polymerase by inducing endonucleolytic cleavage of the nascent transcript by th
148 is of the majority of snRNAs involves 3' end endonucleolytic cleavage of the nascent transcript from
149 ption by RNA polymerase II is preceded by an endonucleolytic cleavage of the nascent transcript.
150 ves an enzymatic cascade, initiating with an endonucleolytic cleavage of the pre-mRNA at an editing s
152 The 3' end of histone mRNA is formed by an endonucleolytic cleavage of the primary transcript after
153 did not require ATP, and was accompanied by endonucleolytic cleavage of the resulting 3' overhang.
154 NA strand; however, the structural basis for endonucleolytic cleavage of the RNA strand remains elusi
155 in both flies and mammals, each siRNA guides endonucleolytic cleavage of the target RNA at a single s
157 ino acid residues involved in recognition or endonucleolytic cleavage of these diverse substrates.
158 ethylation increases the angiogenin-mediated endonucleolytic cleavage of transfer RNAs (tRNA) leading
160 let-7 miRNA-induced and Argonaute-catalysed endonucleolytic cleavage on target mRNAs at various site
161 c silencing of complementary target mRNAs by endonucleolytic cleavage or translational repression.
163 es typically show chromatin condensation and endonucleolytic cleavage prior to obvious membrane or or
164 -rps14 operons revealed other polyadenylated endonucleolytic cleavage products, indicating that poly(
167 g affinities, (f) the presence or absence of endonucleolytic cleavage sites, (g) control of intracell
168 two distinct steps; the first is a specific endonucleolytic cleavage step called "processing," and t
169 La cell nuclear extract strongly reduced the endonucleolytic cleavage step of the cleavage and polyad
170 on the assumption that the decay involves an endonucleolytic cleavage that functionally inactivates t
171 one pre-mRNAs are processed at the 3' end by endonucleolytic cleavage that is not followed by polyade
172 iotic DSBs in budding yeast are processed by endonucleolytic cleavage that releases Spo11 attached to
175 First, only few mRNAs that undergo low-level endonucleolytic cleavage were observed, suggesting that
176 hat are perfectly complementary by directing endonucleolytic cleavage where they anneal, thereby trig
177 revents both removal of the poly(A) tail and endonucleolytic cleavage within primary transcripts, but
178 , together with the effect of tail length on endonucleolytic cleavage within primary transcripts, sug
179 RecBCD action is required for stimulating endonucleolytic cleavage within the transpososome-protec
181 a heterotrimer necessary for the first step, endonucleolytic cleavage, and it plays an important role
182 The 5' extremity of 12S rRNA is generated by endonucleolytic cleavage, and TbDSS-1 degrades resulting
183 e substrates before and after their exo- and endonucleolytic cleavage, as well as structures of uncle
184 ough a series of processing steps, including endonucleolytic cleavage, nuclear export and a strand se
185 ation followed by exonucleolytic decay, mRNA endonucleolytic cleavage, or translational inhibition.
186 d in standard enzymatic reactions (ligation, endonucleolytic cleavage, random labeling, PCR, and cycl
187 n elongation are recognized and targeted for endonucleolytic cleavage, referred to as 'no-go decay'.
188 onal diversity, while Gfh1 inhibits exo- and endonucleolytic cleavage, RNA synthesis, and pyrophospho
203 Mature miRNAs are produced by two sequential endonucleolytic cleavages facilitated by Drosha in the n
204 patterns in vivo suggesting Rrp44-dependent endonucleolytic cleavages in the 5'-ETS and ITS2 regions
205 tructures did not prevent degradation, rapid endonucleolytic cleavages most likely trigger RNA destru
208 t multiple sites is a prerequisite for three endonucleolytic cleavages that initiate small subunit bi
209 ) that binds to RNase E and inhibits RNase E endonucleolytic cleavages without altering cleavage site
213 meiotic double-strand breaks (DSBs) requires endonucleolytic clipping of Rec12(Spo11)-oligonucleotide
214 osphorylation--IRE1alpha's RNase also causes endonucleolytic decay of many ER-localized mRNAs, includ
219 erged from the common ancestor and then two "endonucleolytic" families branched out, separating "blun
224 eased multiple- and single turnover rates of endonucleolytic hydrolysis at near physiological salt co
225 a conserved DNA repair pathway by making an endonucleolytic incision at the 3' side one nucleotide f
226 a conserved DNA repair pathway by making an endonucleolytic incision at the 3'-side 1 nt from a deam
228 repair of deaminated DNA bases by making an endonucleolytic incision on the 3' side one nucleotide f
230 ortant counterpoints in our understanding of endonucleolytic mechanisms and of damaged DNA recognitio
231 nsfers and canonical one-metal and two-metal endonucleolytic mechanisms are provided along with possi
232 , the balance between the exonucleolytic and endonucleolytic modes of hydrolysis shifted in favor of
235 these decay products are the consequence of endonucleolytic or 5'-to-3' exonucleolytic activity is u
236 ation in Escherichia coli employs a one-step endonucleolytic pathway that does not involve any of the
239 oly(A) tail removal by RNase E is in fact an endonucleolytic process that is regulated by the phospho
240 monophosphorylated as a result of sequential endonucleolytic processing by Drosha and Dicer from long
241 cts, the downstream product of atpB pre-mRNA endonucleolytic processing cannot be detected, even tran
242 3'-ends of primary transcripts, the sites of endonucleolytic processing in the 3' untranslated and in
243 that MrsC, directly or indirectly, controls endonucleolytic processing of mRNAs that may be independ
244 s to be extended toward the ICL, followed by endonucleolytic processing of the crosslink, lesion bypa
245 ied two polycistronic tRNA transcripts whose endonucleolytic processing was solely dependent on RNase
249 main structure, and the protein splicing and endonucleolytic reactions are catalyzed by residues in d
250 ow that Zn2+ can serve as a cofactor for the endonucleolytic reactions catalyzed by either the full-l
251 version mediated by Piv and transposition or endonucleolytic reactions catalyzed by enzymes of the re
256 tRNA units within each operon following the endonucleolytic removal of the distal Rho-independent tr
257 er, RNase E is primarily responsible for the endonucleolytic removal of the entire Rho-independent tr
258 es two reactions in vivo: 1) the binding and endonucleolytic removal of the terminal dinucleotides of
259 ceeds in three steps: 3'-end processing, the endonucleolytic removal of the two terminal nucleotides
261 obably triggered by its ability to induce an endonucleolytic RNA cleavage, was separable from its tra
264 rom exonucleolytic digestion but facilitates endonucleolytic scission by MRX with a dependence on ATP
265 uimolar production of rRNAs, it requires the endonucleolytic separation of pre-rRNAs to initiate rRNA
266 Minimally, the action of RISC requires the endonucleolytic slicer activity of Argonaute2 (Ago2) dir
268 d by the ping-pong cycle, which couples Piwi endonucleolytic slicing of target RNAs to biogenesis of
270 the U(L)89 open reading frame may encode an endonucleolytic subunit of the putative HCMV terminase.
271 Gre-factors, which stimulate an endogenous, endonucleolytic transcript cleavage activity of the RNA
272 ion elongation by stimulating an endogenous, endonucleolytic transcript cleavage activity of the RNA
273 of a small catalytic RNA that catalyses the endonucleolytic transesterification of RNA in a highly s
274 of a small catalytic RNA which catalyses the endonucleolytic transesterification of RNA in a highly s
275 3'-phosphoglycolate or 3'-hydroxyl terminus, endonucleolytic trimming of 2-4 nucleotides from the 3'-
276 not D165N Artemis suggests that the lack of endonucleolytic trimming of DNA ends is the principal ca
278 unt-ended DNA, and promotes slow and limited endonucleolytic trimming of the 5'-terminal strand, resu
280 ts, which were designed to probe pathways of endonucleolytic versus exonucleolytic decay, were measur
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