ライフサイエンスコーパス: eubacteria

1 ivision in B. subtilis (and possibly in most eubacteria).

2 rulence and pathogenicity factors in several eubacteria.

3 modification (R-M) systems are widespread in Eubacteria.

4 of the division machinery (divisome) in most eubacteria.

5 messenger RNA in extremophilic Gram-positive eubacteria.

6 ary roots, with identified homologs found in eubacteria.

7 periodic compared to those of eukaryotes and eubacteria.

8 e in many archaebacteria and some pathogenic eubacteria.

9 cifying the morphology of many non-spherical eubacteria.

10 synthase in plants, fungi, archaea, and some eubacteria.

11 nic arginine biosynthetic pathway of several Eubacteria.

12 ukaryotes or its precursor, preQ(1) base, in eubacteria.

13 l and is accomplished by the UvrC protein in eubacteria.

14 class of the gram-positive, low-G+C-content eubacteria.

15 group from newly synthesized polypeptides in eubacteria.

16 chaperone that is present in all species of eubacteria.

17 950s, is widely distributed in eukaryota and eubacteria.

18 ee HDAC classes (including class 4) exist in eubacteria.

19 sferred locus and is present in a variety of eubacteria.

20 into and across the cytoplasmic membrane of Eubacteria.

21 ency of usage in mesophilic vs. thermophilic eubacteria.

22 cellular energy metabolism in eukaryotes and eubacteria.

23 are present in the genomes of a diversity of Eubacteria.

24 ikely to represent a new class of introns in eubacteria.

25 proteins and is widely distributed among the eubacteria.

26 es in precellular ancestors of Gram-negative eubacteria.

27 biotic origins of eukaryotic cells involving eubacteria.

28 ns related to the principal sigma factors of eubacteria.

29 e to either neurosporene or lycopene in most eubacteria.

30 of an NAD(+) ligase from a source other than eubacteria.

31 ints that limit the evolution of other known eubacteria.

32 s that are phylogenetically conserved in the Eubacteria.

33 are crucial for biofilm formation in diverse eubacteria.

34 , however, the Alu domain is lacking in most eubacteria.

35 and Tsr, chemotaxis transducers from enteric eubacteria.

36 their function in vivo in haloarchaea and in eubacteria.

37 n H. pylori J99 but highly diverged in other eubacteria.

38 nserved among eukaryotes, archaebacteria and eubacteria.

39 for a common photosynthetic ancestry for all eubacteria.

40 and bacterial T4 phages but not to those of eubacteria.

41 nascent ribosome-synthesized polypeptides in eubacteria.

42 excision repair in archaea and thermophilic eubacteria.

43 e conserved in one or more distantly related eubacteria.

44 group from newly synthesized polypeptides in eubacteria.

45 t for the initiation of protein synthesis in eubacteria.

46 archaea, and the class II enzymes of certain eubacteria.

47 nthetic oligonucleotide primers specific for eubacteria.

48 nematodes, and in archaebacteria but not in eubacteria.

49 to have occurred during the evolution of the eubacteria.

50 ete genomes of only a few archaebacteria and eubacteria.

51 homologous to the chemotaxis transducers in eubacteria.

52 e for regulating ribosomal proteins in other eubacteria.

53 has recently been discovered in a variety of eubacteria.

54 cting channel in the cytoplasmic membrane of eubacteria.

55 al formyl group from nascent polypeptides in eubacteria.

56 inase, with homologues in plants and several eubacteria.

57 section of the mechanism of light sensing in eubacteria.

58 doreductase or complex I of mitochondria and eubacteria.

59 rtant for initiation of protein synthesis in eubacteria.

60 be a universal feature of tmRNA activity in eubacteria.

61 formed a distinct monophyletic lineage among eubacteria.

62 re acquired by a methanogenic recipient from eubacteria.

63 in the genomes of M. tuberculosis and other eubacteria.

64 t), instead of the three that are present in eubacteria.

65 (TmMre11) and the first such structure from eubacteria.

66 mRNA template to rescue stalled ribosomes in eubacteria.

67 ation during stationary phase in unicellular eubacteria.

68 e of biofilm structural stability in diverse eubacteria.

69 about nucleoid organization in thermophilic eubacteria.

70 cell-wall component of all archaea and many eubacteria.

71 But little is known about them in eubacteria.

72 s in lipids of eukaryotes was higher than in eubacteria.

73 wn about the function of primases from other eubacteria.

74 teractions with L15 that are not possible in eubacteria.

75 genes from the slime mold Dictyostelium and eubacteria.

76 ich are achieved by the endonuclease UvrC in eubacteria.

77 nwinds duplex DNA at the replication fork of eubacteria.

78 tsA-FtsZ interaction is nearly ubiquitous in Eubacteria.

79 e most ancient heme synthesis pathway in the Eubacteria.

80 tion specificity of RNA polymerase (RNAP) in eubacteria.

81 isopentenyl diphosphate formation in several eubacteria, a green alga, and plant chloroplasts has bee

82 gence of the Gram-positive and Gram-negative eubacteria, about 2 billion years ago.

83 The highly conserved nature of EF-Tu among eubacteria allowed PCR amplification of a tuf gene fragm

84 In free-living eubacteria an external shell of peptidoglycan opposes in

85 unusual, since representatives are found in eubacteria, an insect (Drosophila), and a vertebrate (Xe

86 y equal to 450 amino acid) form of GidA from eubacteria and about 24% identity overall with the large

87 okinase/fructokinase protein family found in eubacteria and also in the eukaryote Giardia lamblia and

88 PFOR and hydrogenase are found in eubacteria and amitochondriate eukaryotes, but not in ty

89 ages from a broad spectrum of hosts spanning Eubacteria and Archaea appear to conserve this frameshif

90 Eubacteria and archaea contain a variety of actin-like p

91 Therefore, genome-wide codon bias in eubacteria and archaea may be predicted from intergenic

92 Metabolic pathways in eubacteria and archaea often are encoded by operons and/

93 arent orthologs of this protein are found in Eubacteria and Archaea, but not in eukaryotes.

94 The rpoB and rpoC genes of eubacteria and archaea, coding respectively for the beta

95 e synthase, ThyX, is present in a variety of eubacteria and archaea, including the mycobacteria.

96 plasmid genome, have chromosomal homologs in eubacteria and archaea.

97 , and its homologs are present in almost all eubacteria and archaea.

98 es only in the genomes of other thermophilic Eubacteria and Archaea.

99 nsfer may have occurred between thermophilic Eubacteria and Archaea.

100 d within small genetic modules widespread in eubacteria and archaea.

101 DapL orthologs were identified in eubacteria and archaea.

102 ns have been tested primarily with data from eubacteria and archaebacteria [6-8].

103 et of three genes (phlACB) conserved between eubacteria and archaebacteria and a gene (phlD) encoding

104 Iron became an essential element for both Eubacteria and Archeabacteria in the early oxygen-free s

105 existed before the split between Archaea and Eubacteria and are essential in eukaryotes.

106 s coordinating zinc are conserved throughout eubacteria and chloroplasts, but are absent from homolog

107 ger rings of known structure, from c9-c15 in eubacteria and chloroplasts, conserve either a lysine or

108 al role in selection of the division site in eubacteria and chloroplasts.

109 oded by a diverse gene family that occurs in eubacteria and eukaryotes (mainly in fungi).

110 ion(s) in lipids forming plasma membranes of eubacteria and eukaryotes but not for those in archaea.

111 TvQR1 and TvQR2 protein homologs in Archea, Eubacteria and Eukaryotes indicated that both gene famil

112 estimates of the times of divergence between eubacteria and eukaryotes, between protists and other eu

113 e different proteins, obtained from archaea, eubacteria and eukaryotes, suggests that an intrinsic st

114 y equal to 620 amino acid) form of GidA from eubacteria and eukaryotes.

115 Era is a small G-protein widely conserved in eubacteria and eukaryotes.

116 enes that existed prior to the divergence of Eubacteria and Eukaryotes.

117 Since replicative polymerases of eubacteria and eukaryotes/archaea are not homologous, th

118 Ribosomal protein synthesis in eubacteria and eukaryotic organelles initiates with an N

119 nt functions; and (iii) recA, functioning in eubacteria and eukaryotic organelles.

120 that is conserved in a number of pathogenic eubacteria and fungi.

121 ired throughout the cell division process in eubacteria and in archaea.

122 -dependent DNA ligases are found only in the eubacteria and in entomopoxviruses.

123 initiated with methionine, whereas, that in eubacteria and in eukaryotic organelles, such as mitocho

124 t for the initiation of protein synthesis in eubacteria and in eukaryotic organelles.

125 euosine modification of tRNAs in eukarya and eubacteria and in the archaeosine modification of tRNAs

126 molecular mass 40,000 which is ubiquitous in eubacteria and is also found in archaea and chloroplasts

127 However, proteasomes are uncommon in eubacteria and it remains to be established whether Mtb'

128 expressed primary Mg2+ uptake system of most eubacteria and many archaea.

129 Unlike the GroEL homologs of eubacteria and mitochondria, oligomer preparations of th

130 a RecA-related protein found universally in eubacteria and plants, implicated in processing of recom

131 ighly conserved protein, found in almost all eubacteria and plants, with sequence similarity to the R

132 onal surveillance and ribosome rescue in all eubacteria and some eukaryotic organelles.

133 domains of the DNA polymerase I proteins of Eubacteria and the FEN1 proteins of Eukarya and Archaea

134 s is generally thought to be conserved among eubacteria and the majority of the discussion will focus

135 is, the non-mevalonate pathway found in most eubacteria and the mevalonate pathway found in animal ce

136 group from newly synthesized polypeptides in eubacteria and the organelles of certain eukaryotes.

137 is, and ClpP proteases are conserved between eubacteria and the organelles of eukaryotic cells.

138 ntified within six species: two archaea, two eubacteria and two eukaryotes.

139 nsfer of dut genes among eubacteria, between eubacteria and viruses, and between retroviruses.

140 domains Archaea (archaebacteria), Bacteria (eubacteria) and Eucarya (eukaryotes) and the placement o

141 main of life that is distinct from Bacteria (eubacteria) and Eucarya (eukaryotes).

142 2'-phosphotransferase is not present in all Eubacteria, and a gene disruption experiment demonstrate

143 Most eubacteria, and all eukaryotes examined thus far, encode

144 aconitase) from fungi and other eukaryotes, eubacteria, and archaea to evaluate possible evolutionar

145 e-specific recombinases observed in Archaea, Eubacteria, and Eukarya.

146 species in the three life domains (archaea, eubacteria, and eukaryotes) revealed a remarkable statis

147 antly related to RecJ is present in archaea, eubacteria, and eukaryotes, including a hypothetical pro

148 evolutionarily conserved pathway in archaea, eubacteria, and eukaryotes, including humans.

149 e actin-like protein FtsA is present in many eubacteria, and genetic experiments have shown that it p

150 ors from three branches of life (ascomycete, eubacteria, and oomycete) converge onto the Arabidopsis

151 In fungi, eubacteria, and plant chloroplasts, ring sizes of c(10)-

152 found in Thermotoga maritima, a thermophilic eubacteria, and suggests a conserved mechanism of UDG-in

153 bacteria, that the DXP pathway is germane to eubacteria, and that eukaryotes have inherited their gen

154 Yet, despite their widespread occurrence in Eubacteria, and the diverse biological effects they elic

155 s are found in eukaryotes, archaea, and some eubacteria, and their activity is critical for many cell

156 ray of DNA rearrangements in archaebacteria, eubacteria, and yeast and belongs to the subset of this

157 and for other representative organisms from eubacteria, archaea and eukarya.

158 ven genomes from the three kingdoms of life: Eubacteria, Archaea and Eukaryota.

159 an amino acid sequence that is conserved in Eubacteria, Archaea, and Eukarya.

160 evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes, including humans.

161 p II introns are self-splicing RNAs found in eubacteria, archaea, and eukaryotic organelles.

162 els exist in all three domains of organisms: eubacteria, archaebacteria, and eukaryotes.

163 t of solutes across the membrane barriers of eubacteria, archaebacteria, and eukaryotes.

164 ily with multiple enzyme homologues found in eubacteria, archaebacteria, and eukaryotes.

165 D was present in the last common ancestor of eubacteria, archaebacteria, and eukaryotes.

166 Complete genomes of yeast, gram eubacteria, archaebacteria, and mitochondria do not cont

167 nucleases found in bacteriophage T4 and T5, eubacteria, archaebacteria, yeast, Drosophila, mouse and

168 The eubacteria-archaebacteria symbiosis became permanent as

169 d in a large family of sensory proteins from eubacteria, archea and eukarya eliminates the redox resp

170 llowing: (1) Numbers of transport systems in eubacteria are approximately proportional to genome size

171 Genes derived from eubacteria are more abundant than those from archaebacte

172 nisms, including thermophilic and mesophilic eubacteria as well as archaebacteria, the human-disease

173 spread in facultative and obligate anaerobic eubacteria, as well as archaea.

174 RecA- and RecBC-catalyzed repair in eubacteria assembles chromosomes fragmented by double-st

175 t cytoplasmic-tubule-containing spirochetes (eubacteria) attached to them.

176 is essential for 30S ribosome biogenesis in eubacteria, because it nucleates subunit assembly and he

177 tional potential transfer of dut genes among eubacteria, between eubacteria and viruses, and between

178 n and its homologues are highly conserved in eubacteria but not in archaea and eukaryotes.

179 nd can be transferred to other Gram-negative eubacteria but tend not to be stably maintained outside

180 very, since it is highly conserved among the eubacteria, but differs significantly from eukaryotes.

181 chanism is both ancient and widespread among eubacteria, but it has been experimentally characterized

182 eral gene transfer (LGT), several genes from eubacteria, but it is yet unknown how many genes the Hal

183 nsition between motile and sessile growth in eubacteria, but little is known about the proteins that

184 xH-box RNA-helicases that have homologues in eubacteria, but serve essential functions in the splicin

185 ranslationally across the plasma membrane of eubacteria, but the mechanism of transport is still uncl

186 nanomotor promotes protein translocation in eubacteria by binding both protein cargo and the protein

187 tmRNA rescues stalled ribosomes in eubacteria by forcing the ribosome to abandon its mRNA t

188 strict anaerobes of the Bacteroides class of eubacteria can survive in oxygenated environments until

189 n-synthesizing system of yeast, like that of eubacteria, can at least to some extent utilize formylat

190 mammals and isoprenoid synthesis in certain eubacteria, catalyzing the NAD(P)H-dependent reduction o

191 equences from available eukaryotes, archaea, eubacteria cells, and viruses, including herpesviruses.

192 al role in selection of the division site in eubacteria, chloroplasts, and probably also Archaea.

193 eage that also includes sequences from a few eubacteria (Clostridium difficile, Treponema pallidum, C

194 okaryotes and eukaryotes indicated that most eubacteria contain only one recA.

195 All Bacteria (eubacteria) contain NAD+-dependent DNA ligases, and the

196 MTF from eubacteria contains an approximately 100-amino acid C-te

197 hrome-like proteins in the nonphotosynthetic eubacteria Deinococcus radiodurans and Pseudomonas aerug

198 ytochrome-like proteins in two heterotrophic eubacteria, Deinococcus radiodurans and Pseudomonas aeru

199 rs from two pathogens spanning the eukaryote-eubacteria divergence, three classes of Arabidopsis immu

200 As (rRNAs) from three diverse organisms--the eubacteria E. coli and C. difficile and the archeon H. v

201 Although eubacteria encode only one or two MutS-like proteins, eu

202 Nearly every known species of Eubacteria encodes a homolog of the Borrelia burgdorferi

203 (ProRS) across all three taxonomic domains (Eubacteria, Eucarya, and Archaea) reveals that the seque

204 the Ribonuclease HI (RNH) domains present in Eubacteria, Eukarya, all long-term repeat (LTR)-bearing

205 e shared among a large family of proteins in eubacteria, eukaryotes, and archaea, including the PPX1

206 ses appear to be conserved in all species of eubacteria, eukaryotes, and archaebacteria, and in eukar

207 y conserved in all domains of life: Archaea, eubacteria, eukaryotes, and organelles (mitochondria, ch

208 modified nucleoside found widely in tRNAs of eubacteria, eukaryotes, and some archaea.

209 he 750 kDa proteasome, not available in most eubacteria except Actinomycetes, appears to contribute t

210 idene membrane proteins ubiquitous in marine eubacteria, exhibit light-driven proton transport activi

211 In Eubacteria, expression of genes transcribed by an RNA po

212 It is an essential enzyme in eubacteria for the removal of the formyl group from the

213 For example, archaea and eubacteria formed eukaryotic cells, and cells formed mul

214 s, but are found in the same archaebacteria, eubacteria, fungi, and plants that contain PDX1 homologu

215 biosynthesis pathway of archaebacteria, some eubacteria, fungi, and plants.

216 ly of ammonia transporters found in archaea, eubacteria, fungi, plants and animals.

217 In eubacteria, green algae, and plant chloroplasts, isopent

218 RNase P in eubacteria has a large, catalytic RNA subunit and a smal

219 Ribosomal biology in eubacteria has largely been studied in the Gram-negative

220 messenger RNA (tmRNA, or SsrA), found in all eubacteria, has both transfer and messenger RNA activity

221 luding one eukaryote, four archaeons, and 11 eubacteria, have been completely sequenced and published

222 Mitochondria are derived from eubacteria; however, in most eukaryotes, novel mechanism

223 e coenzyme commonly used by archaea and some eubacteria in a variety of biochemical reactions in meth

224 s promoter is similar to that found in other eubacteria in terms of sequence, with an identical -10 e

225 homologues, MerB is widely distributed among eubacteria in three phylogenetically distinct subfamilie

226 Eubacteria inactivate their ribosomes as 100S dimers or

227 e (TM1446) termed der is highly conserved in Eubacteria including E. coli.

228 athway is restricted to specific lineages of eubacteria including the Cyanobacteria, Desulfuromonadal

229 g proteins similar to RecJ are found in some eubacteria, including Bacillus and Helicobacter, and in

230 hate pathway, which also operates in certain eubacteria, including Escherichia coli, is localized to

231 The distribution of GSH in phototrophic eubacteria indicates that GSH synthesis evolved at or ar

232 NA polymerase III (pol III) of Gram-positive eubacteria is a catalytically bifunctional DNA polymeras

233 y, these data suggest that a large subset of eubacteria is capable of cysteine sulfoxidation.

234 Promoter recognition in eubacteria is carried out by the initiation factor sigma

235 Cell morphology and viability in Eubacteria is dictated by the architecture of peptidogly

236 Cell division in most eubacteria is driven by an assembly of about eight conse

237 Transcriptional plasticity in eubacteria is often mediated by alternative sigma (sigma

238 Unproductive ribosome stalling in eubacteria is resolved by the actions of SmpB protein an

239 of T. maritima, one of the deepest-branching eubacteria known.

240 esumed or demonstrated to associate with the eubacteria-like RNA polymerase of chloroplasts.

241 n protists, plants, and fungi, as well as in eubacteria, likely resulted from extensive lateral trans

242 The GroE (group I) subfamily, found in eubacteria, mitochondria and chloroplasts, have 7-fold s

243 of soluble and membrane-embedded proteins in eubacteria, mitochondria, and chloroplasts.

244 tein DksA controls the stringent response of eubacteria, negatively regulating transcription of trans

245 s they are less common and not ubiquitous in eubacteria or archaea.

246 use Rif(r) mutations are highly conserved in eubacteria, our results indicate that this set of Rif(r)

247 ntinued presence of 2'-phosphotransferase in Eubacteria over large evolutionary times argues for an i

248 have gained a C-terminal domain relative to eubacteria, possibly via the evolutionary acquisition of

249 These enzymes are ubiquitous in eubacteria, prevalent in archaea and temperate phages, p

250 ed about 60% identity to PP(i)-PFKs from two eubacteria, Propionibacterium freudenreichii and Sinorhi

251 assumptions made by using sequence data from eubacteria, protists, plants, fungi, and animals.

252 In eubacteria, recycling is catalyzed by RRF (ribosome recy

253 In eukaryotes, archaea, and in some eubacteria, removal of 3' precursor sequences during mat

254 f DNA replication in eukaryotes, archea, and eubacteria requires interaction of structurally conserve

255 of fungi, yeast, plants, archaebacteria, and eubacteria, respectively.

256 The two major components of the Eubacteria Sec-dependent protein translocation system ar

257 Of the Eubacteria sequenced to date, T. maritima has the highes

258 he genes of E. histolytica and Gram-positive eubacteria share a common ancestor.

259 sus sequence should be applicable throughout eubacteria, should generally facilitate promoter predict

260 In eubacteria, stalled ribosomes are rescued by a conserved

261 s suggest that lateral gene transfer between eubacteria subsequent to the origin of plastids has play

262 t for the initiation of protein synthesis in eubacteria such as Escherichia coli.

263 In some eubacteria, such as Escherichia coli, the -CCA sequence

264 l transfer of the 2'-phosphotransferase into Eubacteria, suggesting that the 2'-phosphotransferase ha

265 The ubiquity of EbfC proteins in Eubacteria suggests that these results apply to a wide r

266 nces of humans, animals, fungi, protozoa and eubacteria, suggests that the present-day human ALDH gen

267 mologs are widely distributed throughout the eubacteria, supporting our proposal that the enzyme fami

268 In eubacteria, termination of translation is signaled by an

269 ources, involving lateral gene transfer from eubacteria, than did all other eukaryotes studied so far

270 Chlamydia are obligate intracellular eubacteria that are phylogenetically separated from othe

271 IHF and HU are small basic proteins of eubacteria that bind as homodimers to double-stranded DN

272 ism may play a role in the life cycle of the eubacteria that have it.

273 HU is a small DNA-binding protein of eubacteria that is believed to induce or stabilize bendi

274 the SEDS family are probably present in all eubacteria that synthesize peptidoglycan as part of thei

275 In eubacteria, the ClpS adaptor has been proposed to be ess

276 In eubacteria, the cofactor is often present in a dinucleot

277 In eubacteria, the endonuclease UvrABC plays a key role in

278 In eubacteria, the final sigma subunit binds to the core RN

279 In eubacteria, the NER system typically consists of UvrA, U

280 the near-ubiquitous conservation of RecA in eubacteria, the pathways that facilitate RecA loading an

281 Although ubiquitous in eubacteria, the ssrA gene encoding tmRNA is not essentia

282 In eubacteria, the transfer-messenger RNA (tmRNA) system fa

283 s of two phylogenetically distinct groups of eubacteria; the alpha-proteobacterial and Acidobacterium

284 changed beta' residues conserved throughout eubacteria; the JE10092 mutation occurred in the hyperva

285 NA polymerases (RNAPs) from the thermophilic eubacteria Thermus aquaticus (Taq) and Thermus thermophi

286 In eubacteria, this enzyme is made up of two subunits: a la

287 Ancient invasions by eubacteria through symbiosis more than a billion years a

288 5 degrees C, is one of the most thermophilic eubacteria thus far described.

289 g these fermentation enzymes from archaea or eubacteria to E. histolytica probably occurred early, be

290 k protein RrmJ (FtsJ), highly conserved from eubacteria to eukarya, is responsible for the 2'-O-ribos

291 ork is present in most living organisms from eubacteria to humans, that most cells and tissues expres

292 ase) cyclophilin A (Cpr1p) is conserved from eubacteria to mammals, yet its biological function has r

293 ng plants, mitochondria possess at least two eubacteria-type RecA proteins that should be core compon

294 most of these key residues, it appears that eubacteria utilize a fundamentally different mechanism f

295 proteins through the cytoplasmic membrane in eubacteria via cycles of binding and release from the Se

296 three domains, the number of carbon atoms in eubacteria was found to be similar to that in eukaryotes

297 encodes the dedicated AhpC reductase in most eubacteria, was found in the H. pylori genome.

298 aea requires more initiation factors than in eubacteria we propose the existence of a common denomina

299 ) addition is necessary, and is not found in eubacteria, where G(-1) is genome-encoded.

300 higher proportion of periodic proteins than eubacteria, which in turn tend to have more than archaea