ライフサイエンスコーパス: eubacterial

1 cus, which lies near the deepest root of the eubacterial 16 S rRNA-based phylogenetic tree, CCA addit

2 c sites in the Escherichia coli and in other eubacterial 16 S rRNAs.

3 rs specific for the conserved regions of the eubacterial 16S rRNA gene was designed for use with the

4 orescent in situ hybridization (FISH) with a eubacterial 16S rRNA probe.

5 the implementation of a PCR for detection of eubacterial 16S rRNA with the TaqMan system will continu

6 dtii, composed of the coding sequence of the eubacterial aadA gene (conferring spectinomycin resistan

7 a Chlamydomonas reinhardtii, expression of a eubacterial aadA gene, conferring spectinomycin resistan

8 s contain more genes of archaebacterial than eubacterial affinity.

9 g and cleavage studies, which establish this eubacterial Ago as a bona fide guide DNA strand-mediated

10 oxins of higher organisms than to most other eubacterial AhpC proteins.

11 ing components of eubacterial Mo-independent eubacterial alternative nitrogenases and other methanoge

12 1 with clear homology to vnfG, a hallmark of eubacterial alternative nitrogenases.

13 itochondria and hydrogenosomes have a common eubacterial ancestor and imply that the earliest-branchi

14 Genes of archaebacterial and eubacterial ancestry tend to perform different functions

15 uorescence in situ hybridization (FISH) with eubacterial and "H. heilmannii"-specific probes was empl

16 oteins were compared to the N termini of 810 eubacterial and 175 archaeal proteins, which are rarely

17 found to occur in 2.0% of archaean, 4.2% of eubacterial and 33.0% of eukaryotic proteins.

18 By comparing the eubacterial and archaeal 5' nucleases, we show that the

19 g 89 complete microbial chromosomes from the eubacterial and archaeal domains.

20 ferentiate the genome-wide codon bias of 100 eubacterial and archaeal organisms.

21 ling case for the divergent evolution of the eubacterial and archaeal TGTs.

22 s that the gating motif is conserved between eubacterial and archaebacterial SecY and eukaryotic Sec6

23 Dps, a ferritin-like protein found in many eubacterial and archaebacterial species, appears to prot

24 tiple sequence alignment of lambdaPP with 28 eubacterial and archeal phosphoesterases identified acti

25 ms have been most thoroughly explored in the eubacterial and eukaryotic branches of life.

26 hows low sequence identity (16-20%) with its eubacterial and eukaryotic counterparts.

27 ships among members of this gene family from eubacterial and eukaryotic genomes.

28 A polymerase are highly conserved throughout eubacterial and eukaryotic kingdoms.

29 , with the inner core structure of PGIs from eubacterial and eukaryotic sources, confirms this enzyme

30 cribed aquaporin water channels from diverse eubacterial and eukaryotic species but not from the thir

31 rresponding to conserved regions between the eubacterial and first halobacterial phototaxis transduce

32 hat is absent from the gamma subunits of the eubacterial and mitochondrial enzymes.

33 odest numbers, and thus far, only in certain eubacterial and organellar genomes.

34 hat the C1xA72 base pair mismatch, unique to eubacterial and organellar initiator tRNAs, may also be

35 , despite their evolutionary distance, these eubacterial and vertebrate rhodopsins start to isomerize

36 orted monophyletic clusters with eukaryotic, eubacterial, and archaeal hosts.

37 urified yeast Sir2p and homologous Archaeal, eubacterial, and human proteins, and depends completely

38 t of the predicted structure for the related eubacterial apocarotenal oxygenase.

39 lications with respect to the three putative eubacterial, archaeal, and eukaryote domains of life and

40 nserved catalytic domains that are common to eubacterial, archaeal, and eukaryotic nuclear-encoded RN

41 s, from bacteria, appeared in 1995 and other eubacterial, archaebacterial and eukaryotic genomes were

42 variety of cellular Activities) are found in eubacterial, archaebacterial, and eukaryotic species and

43 acterial consortium "Thiodendron latens." By eubacterial-archaebacterial genetic integration, the chi

44 Unlike other eubacterial arginases, B. anthracis arginase displays un

45 ass II HMG-CoA reductase, the first class II eubacterial biosynthetic enzyme isolated.

46 PYP) is a member of the xanthopsin family of eubacterial blue-light photoreceptors.

47 The eubacterial CADs are found in metalloproteases, while CA

48 We also find that the eubacterial CCA-, CC-, and A-adding enzymes, as well as

49 No other eubacterial cell division gene homologs were found adjac

50 Many type I signal peptidases from eubacterial cells appear to contain a serine/lysine cata

51 dent escape of the first archaebacterial and eubacterial cells from their hydrothermal hatchery, with

52 a recent addition to the known complement of eubacterial chaperones.

53 nal-transducing protein (HtrI) homologous to eubacterial chemotaxis receptors.

54 s exist in the Archaeon H. salinarium: (i) a eubacterial chemotaxis transducer type with two hydropho

55 deduced protein sequence of HtrII predicts a eubacterial chemotaxis transducer type with two hydropho

56 proposed that the Clostridia are the oldest Eubacterial class and the ubiquity of TFP in this class

57 e for the first time the inducible nature of eubacterial CoM biosynthesis.

58 ss sequences not present in the archaeal and eubacterial counterparts and that the additional sequenc

59 f NpSRII and NpHtrII and fusion hybrids with eubacterial cytoplasmic domains and analyze their functi

60 amino termini of secreted proteins from the eubacterial cytosol based on cycles of reversible bindin

61 t is the first description of a thermophilic eubacterial DAHP synthase.

62 ay algorithm consists of initial broad-range eubacterial detection, followed by Gram typing and speci

63 , all wounds contained significantly greater eubacterial diversity than contralateral skin (P < 0.05)

64 le chronic wounds generally harbored greater eubacterial diversity than healthy skin, the isolation o

65 although no significant difference in total eubacterial diversity was detected between wounds from w

66 ycobacterium smegmatis protein homologous to eubacterial DivIVA-like proteins, including M. tuberculo

67 ty and specificity for 16S PCR for detecting eubacterial DNA compared with those of standard culture

68 uggest a novel substrate binding mode of the eubacterial DNA polymerase enzymes, called a 5' nuclease

69 Many eubacterial DNA polymerases are bifunctional molecules h

70 the first sensory rhodopsin observed in the eubacterial domain, a green light-activated photorecepto

71 them with their homologs in the archaeal and eubacterial domains.

72 ddition, protein L28, which is unique to the eubacterial E site, overlaps the site occupied by 13-deo

73 s between eukaryotic eIF-2gamma proteins and eubacterial EF-Tu proteins, we previously proposed a maj

74 powerhouses of our cells, are remnants of a eubacterial endosymbiont.

75 uences were carried into eukaryotes by early eubacterial endosymbionts about 2 billion years ago, onl

76 Some highly conserved eubacterial enzymes appear not to be encoded by U. ureal

77 s, we show that the polymerase domain of the eubacterial enzymes is critical for the activity of the

78 etylases share nine motifs with archaeal and eubacterial enzymes, including acetoin utilization prote

79 aspartyl residues in the human, archael, and eubacterial enzymes.

80 archaeal Sulfolobus shibatae class I and the eubacterial Escherichia coli class II CCA-adding enzymes

81 The eubacterial, eukaryotic, and archaeal CCA-adding enzymes

82 polymerases tested were inhibited, while no eubacterial, eukaryotic, or bacteriophage enzymes showed

83 The eubacterial flagellum is a complex structure with an elo

84 FtsZ and that it is biochemically similar to eubacterial FtsZs.

85 nd an S-loop with characteristic features of eubacterial GAPDH.

86 es in secondary structure when compared with eubacterial GAPDHs, with an overall increase in the numb

87 is likely to play a broad role in modulating eubacterial gene expression.

88 imilarities to RecJ have been found in every eubacterial genome sequenced to date, with the exception

89 ar attention to the 22 complete archaeal and eubacterial genome sequences.

90 of an ATP-dependent DNA ligase encoded by a eubacterial genome.

91 sts and mitochondria have retained relics of eubacterial genomes and a protein-synthesizing machinery

92 ) are highly expressed essential proteins in eubacterial genomes and in eukaryotic organelles.

93 Many eubacterial genomes including those of Salmonella typhim

94 se encoding RecJ can be found in most of the eubacterial genomes sequenced to date.

95 than was previously reported from studies of eubacterial genomes, including that of the aphid endosym

96 of the parF gene are widely disseminated on eubacterial genomes, suggesting that ParF-mediated parti

97 oded by the mitochondrial genome and by many eubacterial genomes.

98 he morphologically and biochemically complex eubacterial genus Streptomyces.

99 rimers derived from conserved regions of the eubacterial groESL heat shock operon were used to amplif

100 lances of these same enzymes among the major eubacterial groups suggest that the cyanobacteria and Gr

101 d protein of 39 kDa is divergent relative to eubacterial homologs, with 32% identity to Escherichia c

102 ific for glucose and glucosamine, as are its eubacterial homologs.

103 hus profoundly different between CCT and its eubacterial homologue GroEL, consistent with their diffe

104 ryotic ribosomal proteins that do not have a eubacterial homologue.

105 host-derived properties, lost much of their eubacterial identity, and were transformed into extraord

106 ion domain of IF2(mt) mimics the function of eubacterial IF1, by blocking the ribosomal aminoacyl-tRN

107 itochondrial ribosomal proteins appear to be eubacterial in origin but to have evolved additional fun

108 n the ribosome that would be occupied by the eubacterial initiation factor IF1, which is absent in mi

109 tent inhibitor of Escherichia coli and other eubacterial isoleucyl-tRNA synthetases, but not of eukar

110 uence to eukaryote cytoplasmic than to other eubacterial isoleucyl-tRNA synthetases.

111 elial protein has implications that span the eubacterial kingdom.

112 ng protein has broad implications across the eubacterial kingdom.

113 he high-resolution crystal structures of the eubacterial large ribosomal subunit in complex with them

114 Ribosomal protein L27 is a component of the eubacterial large ribosomal subunit that has been shown

115 a polypeptide of just 148 amino acids with a eubacterial-like acidic C-terminus.

116 The eubacterial-like RNA polymerase of plastids is composed

117 Eubacterial Lon proteases contain an N-terminal domain,

118 A 16-aa insertion loop present in eubacterial methionyl-tRNA formyltransferases (MTF) is c

119 C-terminal domain has high homology with the eubacterial methyl-accepting chemotaxis protein.

120 equences and much diminished matching to all eubacterial, mitochondrial, and chloroplast sequences.

121 ationships with genes encoding components of eubacterial Mo-independent eubacterial alternative nitro

122 rchaebacterial DNA that remained attached to eubacterial motility structures and became the microtubu

123 oli outer membrane protein A, a beta-barrel, eubacterial MP, (ii) Halobacterium salinarum bacteriorho

124 of Cell, clarify the end of translation on a eubacterial mRNA.

125 16 amino acid insertion loop, present in all eubacterial MTF's (residues 34-49 in the E. coli enzyme)

126 We demonstrate that eubacterial MTSs interact directly with lipid bilayers a

127 EmrE belongs to a family of eubacterial multidrug transporters that confer resistanc

128 lutamine, is the physiological substrate for eubacterial NAD synthetases and that low activity comple

129 and the BRCT domain that are present in all eubacterial NAD(+) ligases.

130 Evolutionary analysis indicates that eubacterial NADP-dependent isocitrate dehydrogenases (EC

131 Sequence conservation among eubacterial NATs is restricted to structural residues of

132 LeuT, a thermostable eubacterial NSS homolog, has been exploited as a model p

133 d slower for the non-hydrogen-bonded Val 38 (eubacterial numbering).

134 bly more similar to eukaryotic ones than are eubacterial ones.

135 no in vivo characterization of a simplified eubacterial or archaebacterial proteasome has been repor

136 ir origins to horizontal gene transfer (from eubacterial or Dictostelium genomes) or to more conventi

137 seen in previously-determined structures of eubacterial or eukaryotic (cytoplasmic or organellar) ri

138 The eubacterial organism is either a proteobacterium, or a m

139 lmonis and Acholeplasma laidlawii, which are eubacterial organisms lacking a cell wall.

140 POR, ADHE, and FD cloned from eukaryotic and eubacterial organisms.

141 The rRNA gene exhibited typical eubacterial organization (16S-tRNAs-23S-5S).

142 , phylogenetic analysis demonstrates a clear eubacterial origin of this gene and strongly suggests it

143 ondria have retained many hallmarks of their eubacterial origin.

144 ion suggests that L30, which has no apparent eubacterial ortholog, is responsible for establishing th

145 d, they are either outliers or mixed in with eubacterial orthologs.

146 ynthetic gene clusters as observed for other eubacterial PAL genes.

147 his data set with corresponding data for the eubacterial pathogen Pseudomonas syringae and the oomyce

148 pyranose (BacAc(2)) is found in a variety of eubacterial pathogens.

149 estrated by SmpB and tmRNA, is the principal eubacterial pathway for resolving stalled translation co

150 otein motifs found in the active site of all eubacterial peptide deformylases, and N-terminal extensi

151 rity exists between the protozoan enzyme and eubacterial phosphatidylinositol-phospholipases C.

152 Photoactive yellow protein (PYP) is a eubacterial photoreceptor and a structural prototype of

153 ation of photoactive yellow protein (PYP), a eubacterial photosensor.

154 These results indicate that eubacterial photosensory perception is mediated by light

155 l protein biosynthesis is used in nearly all eubacterial phyla, but the specific RNA structures that

156 ch these RNA structures are conserved across eubacterial phyla, we created multiple sequence alignmen

157 , occurs in organisms belonging to only five eubacterial phyla: Cyanobacteria, Proteobacteria, Chloro

158 gs to the Gram-positive bacteria (one of ten eubacterial "phyla")--more precisely to the so-called lo

159 that spirochetes are an ancient and distinct eubacterial phylum.

160 ecA facilitates protein transport across the eubacterial plasma membrane by its association with carg

161 to promote protein translocation across the eubacterial plasma membrane.

162 on to drive protein translocation across the eubacterial plasma membrane.

163 and A-adding enzymes, as well as the related eubacterial poly(A) polymerases, each fall into phylogen

164 m-typing probes correctly identified 100% of eubacterial positive samples as to gram-positive or gram

165 ctly identified the etiologic agent in 16/20 eubacterial positive samples.

166 Myxobacteria are single-celled, but social, eubacterial predators.

167 nella felis was amplified by using universal eubacterial primers and was subsequently cloned and sequ

168 Broad-range eubacterial primers selected from the 16S rRNA gene were

169 The PCR product generated with the eubacterial primers was transferred to a charged nylon m

170 The 16S rDNA V3 region was amplified with eubacterial primers, and the amplification products deri

171 encing of the 16S rRNA gene with broad-range eubacterial primers.

172 RNA polymerase binding in several classes of eubacterial promoters, but the sequences themselves are

173 this promoter are, in fact, prototypical of eubacterial promoters.

174 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with

175 A ATPase motor is a central component of the eubacterial protein translocation machinery.

176 localize to mitochondria and are related to eubacterial proteins that facilitate essential steps in

177 identify closely related LOV domains in two eubacterial proteins that suggests the light-induced con

178 Some highly conserved eubacterial proteins, such as GroEL and GroES, are notab

179 ino acid-sequence properties of human versus eubacterial proteins, which likely reflect differences i

180 atory characterized eukaryotic (hamster) and eubacterial (Pseudomonas mevalonii) 3-hydroxy-3-methylgl

181 e parabasalid clade was a robust part of the eubacterial radiation of GAPDH and showed no relationshi

182 e sequences reveal extended alignments among eubacterial RecA and separately among eukaryotic/archaeb

183 d51 and the closely related archeal RadA and eubacterial RecA proteins place the ATPase site at the p

184 insights into the workings of these complex eubacterial regulatory systems.

185 NA polymerase beta, thereby proving that the eubacterial replicating polymerase, but not the eukaryot

186 d the DnaG primase unwinds duplex DNA at the eubacterial replication fork and synthesizes the Okazaki

187 the structure of the catalytic domain of the eubacterial replicative polymerase is unrelated to that

188 none biosynthesis, and complexes I-IV of the eubacterial respiratory chain that functions in the halo

189 One of the distinctive features of eubacterial retinal-based proton pumps, proteorhodopsins

190 ts with the first structurally characterized eubacterial retinylidene photoreceptor Anabaena sensory

191 We present the structure of a eubacterial rhodopsin, which differs from those of previ

192 Eubacterial ribosomal large-subunit methyltransferase H

193 central domain of MrpL36p that is similar to eubacterial ribosomal large-subunit protein L31 is suffi

194 bosomal components are clearly homologous to eubacterial ribosomal proteins, but others appear unique

195 mplex with initiator fMet-tRNA(iMet) and the eubacterial ribosome.

196 ray crystallographic and cryo-EM maps of the eubacterial ribosomes and a cryo-EM map of the mammalian

197 mycin S, and telithromycin bound explain why eubacterial ribosomes containing the mutation A2058G are

198 ntibiotics in complex with both archaeal and eubacterial ribosomes have been determined, yet discrepa

199 universal factors, alone and in complex with eubacterial ribosomes, point to the structural homology

200 Ribosomal protein L9 is a component of all eubacterial ribosomes, yet deletion strains display only

201 a protein homologous to the L14 proteins of eubacterial ribosomes.

202 3-deoxytedanolide, precluding its binding to eubacterial ribosomes.

203 rchaeal and eukaryotic ribosomes, but not of eubacterial ribosomes.

204 lying the differences between eukaryotic and eubacterial ribosomes.

205 ore RNA and a higher number of proteins than eubacterial ribosomes.

206 The sigma subunit of eubacterial RNA polymerase is essential for initiation o

207 The sigma subunit of eubacterial RNA polymerase is required throughout initia

208 the extra-cytoplasmic function subfamily of eubacterial RNA polymerase sigma factors.

209 Eubacterial RNA polymerase uses the sigma (sigma) subuni

210 NAs, 25 species of tRNA, three subunits of a eubacterial RNA polymerase, 17 ribosomal proteins, and a

211 or rifampin, an inhibitor of organellar and eubacterial RNA polymerase, both showed disappearance of

212 rease in the number of protein subunits over eubacterial RNase P is consistent with an increase in fu

213 s corresponding to a conserved region of the eubacterial rRNA genes.

214 of interaction of YS11, the yeast homolog of eubacterial S17, with 18 S rRNA was obtained by assessin

215 A homologue of eubacterial SecY called cpSecY is localized to the thyla

216 ater differences between archaebacterial and eubacterial sequences indicate these two groups may have

217 ly related to fungal proteases than to other eubacterial sequences.

218 cyanobacterial and high-G + C, Gram-positive eubacterial sequences.

219 of evolutionary conservation across 63 RecA eubacterial sequences.

220 nd other members of the heat shock family of eubacterial sigma factors.

221 activating transcription by the alternative eubacterial sigmaN (sigma54) RNA polymerase holoenzyme.

222 Amino acids critical to the eubacterial signal peptidases and Sec11p are, however, p

223 The eubacterial SOS system is a paradigm of cellular DNA dam

224 In the chloroplasts of plants and in several eubacterial species ALA is formed in a two-step process

225 family with representatives in several other eubacterial species and to the prediction that the membe

226 omolecular synthesis operon present in other eubacterial species but is part of an operon with a dgt

227 A rapid assay for eubacterial species identification is described using hi

228 mechanics of cell septation in conventional eubacterial species is believed to be mediated by cell-w

229 The eubacterial species Streptomyces coelicolor proceeds thr

230 Genes from 10 of 14 eubacterial species studied and one eukaryote, the yeast

231 allows for highly sensitive detection of any eubacterial species with simultaneous species identifica

232 of the dnaK and groE operons in at least 27 eubacterial species.

233 rse prokaryotes, including many Archaeal and Eubacterial species.

234 disease cannot be a spiroplasma or any other eubacterial species.

235 ancient rooting, with clear members found in eubacterial species.

236 bosomal peptide synthesis, and to screen for eubacterial-specific drugs.

237 Thus eubacterial SSBs are homotetrameric whilst the eucaryal

238 rse range of eukaryote, archaebacterial, and eubacterial taxa has revealed that the evolutionary orig

239 The X-ray crystal structure of a eubacterial TGT bound to preQ1 suggested that aspartate

240 complex with preQ(1) (the substrate for the eubacterial TGT).

241 ent with the idea that the Cys145 evolved in eubacterial TGTs to recognize preQ(1) but not queuine, w

242 are highly conserved in a novel subfamily of eubacterial topoisomerases found largely in Actinobacter

243 RNA polymerases I, II and III than it is to eubacterial transcription systems.

244 y to the signaling and methylation domain of eubacterial transducer Tsr.

245 Eubacterial transducers are transmembrane, methyl-accept

246 representing the highest homology region of eubacterial transducers.

247 In eubacterial translation, lack of a stop codon on the mRN

248 show that the absA locus encodes a putative eubacterial two-component sensor kinase-response regulat

249 the RNAP assembly may be a unique feature of eubacterial-type enzymes.

250 oma brucei are composed of 9S and 12S rRNAs, eubacterial-type ribosomal proteins, polypeptides lackin

251 hloroplast-encoded RNA polymerase (PEP) is a eubacterial-type RNA polymerase that is presumed to asse

252 s transcribed from a sigma70 promoter by the eubacterial-type RNA polymerase.

253 itive eubacterium and the other resembling a eubacterial V nitrogenase gene cluster, suggests horizon

254 d for sirtuin enzymes derived from archaeal, eubacterial, yeast, metazoan, and mammalian species, sug

255 ctionally homologous to the P2 Ogr family of eubacterial zinc finger transcription factors required f