ライフサイエンスコーパス: expressed gene

1 ls of H3K4me3 and are associated with highly expressed genes.

2 em prevents cryptic promoter function within expressed genes.

3 genes, whereas Tol2 and SB preferred weakly expressed genes.

4 A elimination in nematodes silences germline-expressed genes.

5 l transcriptome with over 350 differentially expressed genes.

6 The switch affected over 14% of all expressed genes.

7 ll-sib progeny, with the positioning of 8793 expressed genes.

8 iers of BMPR2 signaling or to differentially expressed genes.

9 hile G. rostochiensis had 278 differentially expressed genes.

10 were significantly linked by covariance with expressed genes.

11 dscape and the enhanced transcription of low-expressed genes.

12 deling, and identification of differentially expressed genes.

13 scription start sites in the promoters of co-expressed genes.

14 c signals between mutated and differentially expressed genes.

15 a 4 (LAMA4) emerged as the most consistently expressed genes.

16 m in the problem of detecting differentially expressed genes.

17 ed in the upstream region of the most highly expressed genes.

18 gonistically acting groups of differentially expressed genes.

19 analyses aimed at identifying differentially expressed genes.

20 lihood ratio test to identify differentially expressed genes.

21 rs based on high or low proportion of highly expressed genes.

22 onounced in evolutionarily conserved, highly expressed genes.

23 RNA-Seq workflows to identify differentially expressed genes.

24 variance of a gene and detect differentially expressed genes.

25 d genes, with no overlap with differentially expressed genes.

26 ions in 18 esophagus-specific differentially expressed genes.

27 prove the testing performance for very lowly expressed genes.

28 ocused on the identification of rhythmically expressed genes.

29 enhancer separated by CTCF sites from widely expressed genes.

30 iptome-wide identification of differentially expressed genes.

31 s well as a unique profile of differentially expressed genes.

32 onses are over-represented in differentially expressed genes.

33 on of Kcnq1ot1 and suppression of maternally expressed genes.

34 individual immune pathways or differentially expressed genes.

35 ncoded Perforin-2 (encoded by the macrophage-expressed gene 1, Mpeg1), which possesses a pore-forming

36 ession of (1) CCL26 (the most differentially expressed gene), (2) periostin, or (3) a multigene IL-13

37 Maternally expressed gene 3 (MEG3) is an imprinted gene located at

38 Among them, the lncRNA maternally expressed gene 3 (Meg3) was found to be mostly expressed

39 east carcinoma xenografts induces paternally expressed gene 3 (Peg3), an imprinted gene encoding a zi

40 (VEGFR2) signaling that requires paternally expressed gene 3 (PEG3).

41 ting Control Region) of the Peg3 (Paternally Expressed Gene 3) domain contains an unusual cluster of

42 Peg3 (paternally expressed gene 3) is an imprinted gene localized within

43 nificantly reduced numbers of differentially expressed genes (458) and miRNA (0) and genome hypermeth

44 ing with linkage regions, 240 differentially expressed genes, 4651 differentially methylated genes an

45 lication designed to identify differentially expressed genes across all GEO studies matching user-spe

46 odel to each gene, it reports differentially expressed genes across time points from a single or betw

47 The 20 most differentially expressed genes after microarray analysis were identifie

48 genes, relative to other root hair- and root-expressed genes, among these species.

49 NA-seq identified an array of differentially expressed genes, among which the transcript levels of so

50 f hnRNPC1/C2 resulted in 3500 differentially expressed genes and 2232 differentially spliced genes, w

51 3856 differentially expressed genes and 250 significantly expressed microRNA

52 Overall we detected 438 differentially expressed genes and 991 differentially expressed small n

53 n one-fourth of the syncytium differentially expressed genes and are of functional significance.

54 /+ mice involving hundreds of differentially expressed genes and changes in diverse molecular pathway

55 domains were also enriched in differentially expressed genes and close to DNAm changes upon modulatio

56 ifically, ARD2 and VIN3 were the most stably expressed genes and consequently we propose they be adop

57 ve correlation is more pronounced for highly expressed genes and consistently observed when using dif

58 They often shared sequence homology with co-expressed genes and contained potential microRNA-binding

59 is consistent for over 90% of differentially expressed genes and differentially methylated CpG probes

60 We identify several hundred differentially expressed genes and dozens of differentially edited site

61 h cell type-specific changes to ubiquitously expressed genes and have an important effect on fitness.

62 o a large, well-characterized set of midline-expressed genes and in vivo validated enhancers.

63 4 cells in terms of number of differentially expressed genes and magnitude of induction/repression.

64 ary genetic profiles revealed differentially expressed genes and microRNAs following subchronic inhal

65 Expression pairing of the differentially expressed genes and miRNAs indicated an inverse relation

66 We also identified highly expressed genes and pathways associated with chemotaxis

67 at cell types differ in proportion of highly expressed genes and the number of alternatively spliced

68 Comparative analysis of differentially expressed genes and their non-coding RNA partners, long

69 Cohesive sites coincide with highly expressed genes and transcription inhibition leads to de

70 ed from the species described so far in many expressed genes and transcriptomic profiling clustered p

71 mpare experiments to identify differentially expressed genes and transcripts.

72 ripts, expression levels, and differentially expressed genes and transcripts.

73 nd RNA-sequencing methods indicate that most expressed genes and unique small RNAs within the duplica

74 We also found differentially expressed genes and well-known mutations (NF1, IDH1, EGF

75 ly binds across transcribed regions of lowly expressed genes, and its binding specifies the pattern o

76 the average power across the differentially expressed genes, and then calculate the sample size to a

77 (that differ among the genera) and germline-expressed genes (approximately 1000-2000 or 5%-10% of th

78 identified, de novo mutations in neuronally expressed genes are a common scenario.

79 ructures and the spatial distributions of co-expressed genes are analyzed: the latter are shown to de

80 found that 3% of 19,000 not differentially expressed genes are Class II cancer gene candidates.

81 In contrast, single-cell co-expressed genes are enriched for known protein-protein i

82 Furthermore, differentially expressed genes are identified between knee and hip FLS

83 pathways, but the majority of differentially expressed genes are not well characterized.

84 ies demonstrated that >80% of differentially expressed genes are up-regulated in VDR(-/-) KSCs; thus,

85 el species, and also identified a list of co-expressed genes as potential biomarkers which will provi

86 hydroxymethylation marks the body of highly expressed genes as well as distal regulatory regions wit

87 T;DLX3(fl/fl) skin identified differentially expressed genes associated with inhibition of leukocyte

88 Other hybrids expressed genes associated with ontologic cancer sets an

89 n with asthma to identify key differentially expressed genes associated with TH1-polarized inflammati

90 mong the extensive network of differentially expressed genes associated with this model, including sy

91 to the identification of 254 differentially expressed genes at 0 mM NaCl and 391 genes at 300 mM NaC

92 n from 44 pigs revealed 6,430 differentially expressed genes at one or more time points post infectio

93 Differentially expressed genes between breast cancer and non-tumor tiss

94 urface molecules are the most differentially expressed genes between classes and are highly informati

95 the most frequently occurring differentially expressed genes between conditions.

96 rofiling workflow to identify differentially expressed genes between experimental conditions.

97 d cells and found hundreds of differentially expressed genes between susceptible and resistant indivi

98 etic polymorphisms nearby the differentially expressed genes between susceptible and resistant indivi

99 Array experiments revealed 24 differentially expressed genes between the shock-resistant and shock-se

100 identified 160 significantly differentially expressed genes between the two groups, of which 62 were

101 four genotypes, the number of differentially expressed genes between the two parental inbred lines si

102 The chromosome location of differentially expressed genes between the winter and spring wheat gene

103 e were 1,284, 1,373 and 1,629 differentially expressed genes between TN and TM at 0 hr, 4 hr and 24 h

104 Accurate detection of differentially expressed genes between tumor and normal samples is a pr

105 We obtained the differentially expressed genes between whorls in wild and cultivated Ca

106 tistical power, the resulting differentially expressed genes, biological conclusions, and gene signat

107 totic neurons is to functionally demethylate expressed gene bodies while retaining the role of MeCP2

108 In expressed gene bodies, accumulation of 5hmCG acts in opp

109 me regions that are associated with actively expressed genes both with and without ethylene treatment

110 Among 609 differentially expressed genes, c-Kit, Met and EphA3 cytokine/tyrosine-

111 two types of CTL responses revealed uniquely expressed gene clusters upon encountering hepatoma targe

112 related variability, and identify sets of co-expressed genes correlated with pathological tau and inf

113 rocal crosses reveal that the differentially expressed genes could not be explained by maternal effec

114 on was enriched at super-enhancers in highly expressed genes critical for liver function.

115 ts targeting the noncoding regions of highly expressed genes defining certain secretory cellular line

116 bout 70% of the significantly differentially expressed genes (DEG) were the same using reference geno

117 pus has the largest number of differentially expressed genes (DEGs) (82), followed by the neocortex (

118 o tools available to identify differentially expressed genes (DEGs) across different 'omics' data typ

119 ion that the immunity-related differentially expressed genes (DEGs) analysis exhibited 30, 78, and 72

120 n across all genes, including differentially expressed genes (DEGs) and outliers, which will inevitab

121 s exhibit shorter distance to differentially expressed genes (DEGs) and possess increased information

122 lect metabolic biomarkers and differentially expressed genes (DEGs) associated with resistant-ascites

123 dentified 1,445 significantly differentially expressed genes (DEGs) at least 2 folds with AHO treatme

124 transcriptome, then identify differentially expressed genes (DEGs) for endophyte-symbiotic (E+) vs e

125 en interaction by identifying differentially expressed genes (DEGs) for resistance to in-vitro seed c

126 been developed for detecting differentially expressed genes (DEGs) from RNA-seq experiments, includi

127 Data analysis revealed 1062 differentially expressed genes (DEGs) in G. arboreum.

128 The number of differentially expressed genes (DEGs) in S54 (2,290) was much larger th

129 these processes by comparing differentially expressed genes (DEGs) in the pistil transcriptomes of A

130 tome analysis to identify the differentially expressed genes (DEGs) response to salt shock and elucid

131 substantial majority (89%) of differentially expressed genes (DEGs) that are more highly expressed in

132 -infection) and the number of differentially expressed genes (DEGs) was highest during late mycosis (

133 reads, the largest number of differentially expressed genes (DEGs) was obtained in the resistant (Na

134 n related genes and many more differentially expressed genes (DEGs) were found between the epithelium

135 A total of 2,838 differentially expressed genes (DEGs) were found in LD vs MD, LE vs ME,

136 No differentially expressed genes (DEGs) were found to be significant when

137 Differentially expressed genes (DEGs) were identified by analysis of va

138 , 101, 123, 215, 182, and 289 differentially expressed genes (DEGs) were identified in nod- E4, E7 an

139 vels of immune mediators, and differentially expressed genes (DEGs) within whole blood (WB) and perip

140 number of psoriasis-increased differentially expressed genes (DEGs), but analysis of KC cultures iden

141 se and about one third of the differentially expressed genes (DEGs), including cytochrome P450 monoox

142 ever, only a small percent of differentially expressed genes (DEGs), including the imprinted gene IGF

143 ed RNA sequencing to identify differentially expressed genes (DEGs), over-represented pathways, and u

144 profiling identified a set of differentially expressed genes (DEGs), revealing 1422 up- and 999 down-

145 Within the differentially expressed genes (DEGs), we detected 157 at peak lactatio

146 Quantitative analysis in 53 differentially expressed genes demonstrated that 32 (60%) have signific

147 We find that long, highly expressed genes do not form topological boundaries simpl

148 icile Alr2 racemase is the sixth most highly expressed gene during C. difficile spore formation, a pr

149 regulatory regions of >30% of differentially expressed genes during the initiation of pancreatitis.

150 (PEGs), while endosperm-specific maternally expressed genes (endo-MEGs) were associated with materna

151 We show that modules of co-expressed genes enriched for those encoding synaptic pro

152 ergent species share hundreds of dynamically expressed genes, enriched for transcription factors.

153 Of these, the most significantly expressed gene EPYC might cause iris lesion in MD.

154 nscription start sites of hundreds of testis-expressed genes; evolutionarily conserved across species

155 could trans-regulate the 748 differentially expressed genes (FDR < 0.01) that were mainly enriched i

156 uscle, we have recognized 241 differentially expressed genes (FDR < 0.1).

157 We find a median of one aberrantly expressed gene, five aberrant splicing events and six mo

158 RNA sequencing revealed 657 differentially expressed genes following ischemia, with many that are a

159 which are associated with relatively highly expressed genes for fiber development and seed germinati

160 oderate, but we find numerous differentially expressed genes for growth on gluconate and under salt a

161 ofiling studies to prioritize differentially expressed genes for validation and functional assessment

162 red to a 'silver standard' of differentially expressed genes found in the entire cohort.

163 es the ability to distinguish a differential expressed gene from a differential spliced exon.

164 Likewise, CTCF sites shield a widely expressed gene from suppressive influences of a silent l

165 Here, we show that expressed genes from 5 to 159 meters below the seafloor

166 Data were analyzed for differentially expressed genes (greater than twofold change) and their

167 Instead, differentially expressed genes had multiple, low-affinity CUX1 binding

168 Promoters of about 60% of the differentially expressed genes have a known DNA binding site for SR1, s

169 Ubiquitously expressed genes have been implicated in a variety of spe

170 natural E. coli genes and found that highly expressed genes have evolved more forcefully to minimize

171 Model-based clustering of 397 differentially expressed genes identified eight potential subpopulation

172 The co-expressed genes identified in bulk tumors tend to have s

173 Pathway analysis of expressed genes identified no shared pathways between Nb

174 bone MCs share other sets of differentially expressed genes implicated in resolution of inflammation

175 provides maps of ribosome activity for each expressed gene in a given biological sample.

176 Saa3 was the most highly differentially expressed gene in a microarray comparison of RANKL-treat

177 d specificity for identifying differentially expressed gene in classes with high within class heterog

178 ions implicated ABLIM1 as an allele-specific expressed gene in neuronal tissue.

179 rated that olfactomedin-4 is the most highly expressed gene in nonsurvivors of pediatric septic shock

180 o determine spatial expression foci for each expressed gene in the globular embryo, which revealed th

181 ciates with the promoter regions of actively expressed genes in a heat-dependent fashion.

182 tes NFI temporal binding to a subset of late-expressed genes in a stepwise manner by initial positive

183 The differentially expressed genes in AM association with and without atraz

184 rome (PWS) is caused by a loss of paternally expressed genes in an imprinted region of chromosome 15q

185 Per2 3'-UTR, it does target two rhythmically expressed genes in calvaria, Igf1 and Hif1alpha.

186 ed a data-mining strategy to identify highly expressed genes in Chlamydomonas whose flanking sequence

187 Overlap (P<0.0001) of differentially expressed genes in Hfe(-/-) x Tfr2(mut) brain with human

188 thod was used to characterize differentially expressed genes in pigs infected with a low pathogenic A

189 Next, we identified differentially expressed genes in preeclamptic placentas and intersecte

190 identified 196 and 29 common differentially expressed genes in roots and leaves, respectively, in re

191 sis revealed 831, 674 and 648 differentially expressed genes in S. officinarum, S. robustum and S. sp

192 provide evidence for gain or loss of highly expressed genes in some samples, suggesting that the gen

193 ated among a select number of differentially expressed genes in TGF-beta-treated microglia.

194 ' and 3' flanking sequences of nonadditively expressed genes in the interploidy crosses and were nega

195 Purpose To (a) identify key expressed genes in the periablational rim after radiofre

196 Differentially expressed genes in the phenomenon of wheal development a

197 We found that differentially expressed genes in the prefrontal cortex of individuals

198 Among top differentially expressed genes in the RNA sequencing between pre-PML an

199 nction, we sought to identify differentially expressed genes in the T1D heart.

200 ethylated genes were shared with differently expressed genes, in which 20.7% distinctly hypermethylat

201 Differentially expressed genes included key adipogenesis factors which

202 ny of the top smoking-related differentially expressed genes, including LRRN3 and GPR15, have DNA met

203 r-posterior regions identified 44 regionally expressed genes, including multiple Wnt and ndk/FGF rece

204 Pathway analysis of differentially expressed genes indicated that after WNV NY99 infection,

205 a GATA1/TAL1/LMO2 complex, brings erythroid-expressed genes into proximity with enhancers for transc

206 ic chromosome arms to suppress conditionally expressed genes involved in flowering or DNA repair, inc

207 ed, expanded orthogroups, and differentially expressed genes involved in signal transduction, cell wa

208 The analysis identified >200 differentially expressed genes involved in stem growth, cell wall biolo

209 me-wide data, understanding the role of each expressed gene is an essential next step.

210 uation that the proportion of differentially expressed genes is small or the overall differential exp

211 rrounding the transcriptional start sites of expressed genes; its distribution was inversely correlat

212 r they are also enriched with differentially expressed genes linked to cardiovascular disease (risk).

213 By examining differentially expressed genes, mapping information, and genome reseque

214 s, a model emerges whereby low or moderately expressed genes may have the greatest impact on regulati

215 rice endosperm, we identified 162 maternally expressed genes (MEGs) and 95 paternally expressed genes

216 owever, only approximately 14% of maternally expressed genes (MEGs) and approximately 29% of paternal

217 logical pathways, 30% consist of strongly co-expressed gene modules for which new members are predict

218 -expressed genes, particularly in neuronally expressed genes; most of this elevation arose from large

219 We found that the co-expressed genes observed in single cells and bulk tumors

220 ertions, perhaps occurring de novo, in brain-expressed genes of dorsolateral prefrontal cortex (DLPFC

221 clusters were enriched in the differentially expressed genes of the cpsf30 mutant.

222 Surprisingly, paternally-expressed genes of the non-classical gene imprinted netw

223 with over 2,500 significantly differentially expressed genes on day 3, the peak of infection.

224 rinted expression of a cluster of maternally expressed genes on human chromosome 11p15.5.

225 n networks of proteins encoded by aberrantly expressed genes over signaling pathways associated with

226 Four co-expressed genes (PADI2 [Ensembl ENSG00000117115], ZNF385

227 -compromising URVs was concentrated in brain-expressed genes, particularly in neuronally expressed ge

228 nt analysis indicated that 27 differentially expressed genes, particularly those related to natural k

229 that interact with phenotypic differentially expressed genes (PDEGs), which are up-regulated genes in

230 ition of the transcription of two paternally expressed genes, Peg3 and Usp29, causing the reduced bod

231 s (MEGs) and approximately 29% of paternally expressed genes (PEGs) in C. rubella were commonly impri

232 lly expressed genes (MEGs) and 95 paternally expressed genes (PEGs), which were associated with minia

233 e3 peaks mostly co-localized with paternally expressed genes (PEGs), while endosperm-specific materna

234 Reconstructed network of the differentially expressed genes pointed to the AR as key to CDK11 signal

235 housands of ChIP-seq peaks or differentially expressed genes possess substantial limitations in their

236 Differentially expressed genes preferentially expressed by bone MCs are

237 r related gene homologues and differentially expressed genes, provides a solid foundation for further

238 scanning the transcriptome for additional co-expressed genes, quantified by an integrated log-likelih

239 n quantitative trait loci (cis-eQTL) for 869 expressed genes (qval < 0.05).

240 Conversely, D cells highly expressed genes related to differentiated endothelium in

241 Subpopulations of E. coli PI-7 expressed genes related to dormancy and persister cell f

242 ve tissue infiltration, chemoresistance, and expressed genes related to epithelial-mesenchymal transi

243 In particular, EVP cells highly expressed genes related to progenitor function including

244 ome analysis revealed a number of abundantly expressed genes related to the moth olfactory system, in

245 For each differentially expressed gene, replication was attempted in the alterna

246 ockdown identified 31 and 124 differentially expressed genes, respectively, with 19 genes in common.

247 ogy and PubMatrix analyses of differentially expressed genes revealed a hypoxia response and changes

248 Annotation of differentially expressed genes revealed distinct differences in biologi

249 isorder caused by a deficiency of paternally expressed gene(s) in the 15q11-q13 chromosomal region.

250 ent analysis of significantly differentially expressed genes (SDEGs) showed positive correlation with

251 were located within 36 of the differentially expressed gene sequences.

252 ient procedure to identify differentially co-expressed gene sets and successfully identify influence

253 Analysis of co-expressed gene sets typically involves testing for enric

254 A total of 9.3% of macrophage-expressed genes show ancestry-associated differences in

255 Differentially expressed genes showed enrichment for putative interacto

256 32930 with in the detected region and its co-expressed genes showed significantly reduced expression

257 tology enrichment analysis of differentially expressed genes showed the overrepresentation of genes p

258 Expressed genes, some with premature stop codons, are in

259 ly methylated genes among the differentially expressed genes, specifically those with functions corre

260 Differentially expressed genes stringently selected were used to constr

261 Differentially expressed genes suggest microglial activity, increased r

262 loss of rvr1 results in more differentially expressed genes than does vernalization, indicating that

263 lls, we defined classes of low to moderately expressed genes that are differentially regulated in lat

264 l and visual neocortices but not with highly expressed genes that are not in the interactome.

265 In contrast, most LRCs were in G1 arrest and expressed genes that are regulated by the Wnt pathway or

266 al cell numbers, viable E. coli remained and expressed genes that enable survival despite solar treat

267 sion relationships to identify modules of co-expressed genes that represent differentiated cells, tra

268 Differentially expressed genes that uniformly increase or decrease alon

269 identified a large number of differentially expressed genes, three of which (Nr4a3, Col1a1, and Hnf4

270 rative analyses further found differentially expressed genes to cluster in functional networks and ca

271 rimental factors, and competitive scoring of expressed genes to evaluate their relative importance in

272 es switch APA sites, allowing differentially expressed genes to use alternate 3' UTRs.

273 ors, such as rare variants in the microglial-expressed gene TREM2, strongly impact the lifetime risk

274 Biclustering is widely used to identify co-expressed genes under subsets of all the conditions in a

275 Response patterns of differentially expressed genes, under single and combined stresses (i.e

276 About 48% of all expressed genes use APA to generate transcriptomic and p

277 implemented method to analyze differentially expressed genes using the publicly available networks.

278 The top differentially expressed gene was HMGB1, which interacts with AGER, a k

279 ic architecture of local eQTLs linked to the expressed genes was particularly complex, consisting of

280 ing sites in the promoters of differentially expressed genes was used to reconstruct regulatory netwo

281 curately model a query set of differentially expressed genes, was tested on 671 diverse gene sets fro

282 By RNA-sequencing analysis of differentially expressed genes, we demonstrated that YY1 normally activ

283 ngly, we discovered that most differentially expressed genes were affected by a subset of 77 putative

284 A subset of differentially expressed genes were analyzed and validated by in situ h

285 onstruction, the functions of differentially expressed genes were analyzed systematically.

286 pathways associated with the differentially-expressed genes were characterized across all experiment

287 Transcripts for three trophozoite-expressed genes were lost in AN3661-treated trophozoites

288 ous PZMs within critical exons of prenatally expressed genes were more common in ASD probands than co

289 ourths of approximately 1,100 differentially expressed genes were more highly expressed in primordia

290 and network reconstruction of differentially expressed genes were performed between CDK11 knock down

291 High-confidence differentially expressed genes were verified in the first cohort and va

292 slow cycling cells identified differentially expressed genes when comparing to GFP(-) faster-dividing

293 PB and MLV preferred highly expressed genes, whereas Tol2 and SB preferred weakly ex

294 Here, we show that a set of co-expressed genes, which is enriched for genes with islet-

295 quently mutated oncogenes and differentially expressed genes, which we term Class I cancer genes, are

296 near the transcription start site of highly expressed genes, while Eaf3 is important downstream on t

297 5%-59.3% (95% confidence interval) of highly expressed genes with distant alternative exons exhibit c

298 1,25(OH)2D induced 324 differentially expressed genes, with 187 also observed following hnRNPC

299 s present hypermutation at relapse in highly expressed genes, with a clear mutational signature.

300 This study explores one such asymmetrically expressed gene, Wnt9a, which becomes restricted to the n