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1 o 50 weeks and that it remained circular and extrachromosomal.
2 hat Deltalmxgt1-3 mutants contained a linear extrachromosomal 40 kb amplification of a region on chro
4 3K4me3 and greatly impaired recombination of extrachromosomal and endogenous immunoglobulin gene segm
11 he sites of action for unc-29 and lin-31, an extrachromosomal array was constructed containing the nc
17 In contrast, apoptosis is not enhanced by extrachromosomal arrays carrying genes not driven by ger
20 to the Caenorhabditis elegans germline forms extrachromosomal arrays that segregate during cell divis
21 the C. elegans germline, where conventional extrachromosomal arrays typically fail to express due to
22 dance of homologous templates present in the extrachromosomal arrays versus the paucity of such templ
23 d NHEJ in Schizosaccharomyces pombe using an extrachromosomal assay and find that, as anticipated, it
25 HMRa on a chromosome and on a nonreplicating extrachromosomal cassette as cells passed through S phas
30 elomere-enriched fractions revealed frequent extrachromosomal circles, ranging from 0.7 to 56.8 kb.
31 We also observed a substantial increase in extrachromosomal circular (ecc) repeated DNAs in mutant
32 ybridization studies further determined that extrachromosomal circular DNA loss correlated to the ent
34 d lung carcinoma patients, the prevalence of extrachromosomal circular DNA molecules harboring amplif
35 administered clinically, on the stability of extrachromosomal circular DNA molecules in cancer cells.
37 noncoding RNAs, microDNAs, a family of small extrachromosomal circular DNA species, and tRNA-derived
40 e have identified tens of thousands of short extrachromosomal circular DNAs (microDNA) in mouse tissu
42 bpopulation of cells, PAPI-1 can exist in an extrachromosomal circular form after precise excision fr
44 tiple chromosomal copies and the presence of extrachromosomal circular forms of ICE6013 were detected
45 , we found that the VPI-2 region can form an extrachromosomal circular intermediate (CI) molecule aft
47 d for chromosomal integration, excision, and extrachromosomal circularization of these elements, and
48 rtional inactivation, and the development of extrachromosomal cloning vectors, genetic analysis of Bo
50 larization, integration, or the formation of extrachromosomal complex T-DNA structures that subsequen
51 ons showed that PR has modest activity in an extrachromosomal context but has activity that is barely
53 of aging or life span is the accumulation of extrachromosomal copies of rDNA circles in old mother ce
54 h multidrug-resistant KB cells, which harbor extrachromosomal copies of the multidrug resistance gene
55 . and that there is continuous generation of extrachromosomal copies of the translocated c-myc sequen
58 ngements in classical strains will not yield extrachromosomal CTX DNA and thus will not yield virions
59 erichia coli (ETEC) have largely centered on extrachromosomal determinants of virulence, in particula
60 n be amplified in chromosomes or in circular extrachromosomal DNA (ecDNA), although the frequency and
61 ence changes associated with the presence of extrachromosomal DNA and nonselective persistence of pla
65 nce of episomes of T-cell antigen receptors (extrachromosomal DNA circles formed during intrathymic T
67 ant strains strongly reduced accumulation of extrachromosomal DNA compared with the single agnA- stra
70 our data demonstrate that the presence of an extrachromosomal DNA element in a pathogenic rickettsial
72 orrelia burgdorferi strain B31 MI carries 21 extrachromosomal DNA elements, the largest number known
74 bridizing fragments caused the appearance of extrachromosomal DNA hybridizing to the lytA gene, follo
76 mic the apparently autonomous replication of extrachromosomal DNA in the chloroplast, transformation
80 elements can transpose from relatively short extrachromosomal DNA molecules into the plant genome.
81 nduced cultures revealed the presence of two extrachromosomal DNA molecules, a double-stranded molecu
85 intimate relationship between host cells and extrachromosomal DNA that enables the dynamic acquisitio
98 laria parasite Plasmodium falciparum has two extrachromosomal DNAs associated with organelles whose f
101 evidence that ORD is concentrated within the extrachromosomal domains of the nuclei of Drosophila pri
103 plified DNA sequences are borne on unstable, extrachromosomal double minutes (DMs), which suggests th
104 ve discovered and analysed two novel, linear extrachromosomal double-stranded RNAs (dsRNAs) within oo
105 he 70-kb virulence plasmid of Yersinia, this extrachromosomal element does not appear to harbor genes
109 ously called the D2 permease), on a circular extrachromosomal element, and they overexpress LmGT4 mRN
110 additional putative genes not expected on an extrachromosomal element, such as those encoding an elec
112 The unusual genetic behaviour of two yeast extrachromosomal elements [PSI] and [URE3] is entirely c
113 resistance is most commonly associated with extrachromosomal elements acquired from other bacteria i
116 jannaschii, and its 58- and 16-kilobase pair extrachromosomal elements have been determined by whole-
118 ther support the idea of a critical role for extrachromosomal elements in C. burnetii pathogenesis.
119 hough TDH and TRH homologs can be encoded on extrachromosomal elements in V. cholerae, type III secre
122 ction resulted in the generation of circular extrachromosomal elements varying in size from 8 to 300
124 orc10 (oriC2), and the largest peaks on the extrachromosomal elements were near orc9 (oriP1) in both
125 e yeast DNA was maintained as numerous small extrachromosomal elements which were still present after
126 ired that the viral genomes be maintained as extrachromosomal elements, and terminal differentiation
128 phosphorylated exhibit a high prevalence of extrachromosomal elements, hallmarks of perturbed replic
129 ue has no pseudogenes, introns, transposons, extrachromosomal elements, or inteins; few paralogs; and
136 epressive chromatin structure persists in an extrachromosomal environment immediately following remov
137 normal chromosomal context, as well as in an extrachromosomal episome containing an MLL bcr fragment.
138 -Barr virus (EBV) genome is maintained as an extrachromosomal episome during latent infection of B ly
139 foreign sources to persist in the nucleus as extrachromosomal episomes, revealing a potential mechani
146 (constins) in that circular, nonreplicative extrachromosomal forms occur in which the left and right
148 n induction of the HO endonuclease, a linear extrachromosomal fragment is generated in each cell and
150 A statistically significant decrease in MDR1 extrachromosomal gene copy number was reproducibly detec
151 onal types encode additional chromosomal and extrachromosomal genes that facilitate the ability of E.
155 Here, we conditionally evicted the viral extrachromosomal genome from tumor cells in vitro to exa
157 2 protein maintains and segregates the viral extrachromosomal genomes by tethering them to cellular m
160 mpair both spontaneous and cisplatin-induced extrachromosomal homologous recombination and attenuated
166 ndicative of a crossover outcome) or remains extrachromosomal (indicative of a non-crossover outcome)
167 , which is ordinarily unable to generate the extrachromosomal intermediate required for SXT transfer.
168 ike lambda, the SXT element forms a circular extrachromosomal intermediate through specific recombina
170 near YACs could be detected, suggesting that extrachromosomal maintenance of DNA with the oriP /EBNA-
172 mosome to form a circular but nonreplicative extrachromosomal molecule that is required for its trans
174 Additionally, the results demonstrate that extrachromosomal, not integrated, genomes are the major
175 somes in other kinetoplastids, the T. brucei extrachromosomal NR-element is not generated by drug sel
179 m and other protists, the rDNA is carried on extrachromosomal palindromic elements that comprise up t
180 taining regions in mammalian chromosomes) or extrachromosomal palindromic molecules (equivalent to do
181 ssibility of each chromosomal att site to an extrachromosomal partner carried on a low-copy plasmid.
183 studies described here found no evidence for extrachromosomal plasmid DNA in any of the strains exami
184 ains, we could easily get transformants with extrachromosomal plasmid DNA when closed circular, repli
186 associated herpesvirus (KSHV) persists as an extrachromosomal plasmid in latently infected cells.
190 tumor-derived clones homologously recombined extrachromosomal plasmid substrates at frequencies appro
191 into cells containing the mutant gene on an extrachromosomal plasmid, correction of the point mutati
196 nmotile clones was present in the introduced extrachromosomal plasmids, while the motile MS17 clone w
200 wledge this is the first investigation using extrachromosomal probes containing a Fapy.dG or Fapy.dA
201 ences that, when transcribed from a powerful extrachromosomal promoter, can complement the auxotrophy
202 Further analyses provided empirical data on extrachromosomal prophages and coinfection prevalences,
203 AV, we previously described the existence of extrachromosomal proviral AAV genomes in human tissues.
204 determined the proportion of integrated and extrachromosomal rAAV genomes in mouse livers and their
205 hanges are likely due to the accumulation of extrachromosomal rDNA circles (ERCs) in old cells and th
207 ay a sacrifice during budding: they keep the extrachromosomal rDNA circles (ERCs) so that their buds
209 ds to rDNA instability and elevated level of extrachromosomal rDNA circles and nucleolar fragmentatio
210 ore, mutations of R102 cause accumulation of extrachromosomal rDNA circles and reduce life span, sugg
211 iation with rDNA and subsequent formation of extrachromosomal rDNA circles, and reduced cell survival
217 C) typically have either intrachromosomal or extrachromosomal rearrangements that join the promoter a
221 ed to the Dbeta 12-RSS over Jbeta 12-RSSs on extrachromosomal recombination substrates in nonlymphoid
225 ochromatin domains, mitotic chromosomes, and extrachromosomal regions of mitotic cells by quantitativ
226 omous Ac derivative, Dissociation (Ds), from extrachromosomal replicating and nonreplicating vector D
227 roximately 900 bp) of the rDNA is needed for extrachromosomal replication and stable maintenance of t
229 es were previously shown to be the result of extrachromosomal replication of AMA1-bearing plasmids.
237 rsely, silencing the Smc5/6 complex enhances extrachromosomal reporter gene transcription in the abse
238 hibits the stimulatory effect of HBx both on extrachromosomal reporter genes and on hepatitis B virus
241 ts in dna2 mutants, although in dna2 mutants extrachromosomal ribosomal circles do not accumulate dur
244 a marked increase in the cellular content of extrachromosomal ribosomal DNA circles (ERCs), which can
247 oxically, it also leads to the production of extrachromosomal ribosomal DNA circles, which cause yeas
255 ve cloned and mapped a circular 630-kb human extrachromosomal structure (termed amplisome) using the
257 h nuclear extracts were able to recombine an extrachromosomal substrate and form precise signal joint
262 dGTP pools result in altered N regions in an extrachromosomal substrate transfected into T-cell or pr
263 frequent, cryptic RS that rearrange both in extrachromosomal substrates and in their genomic context
264 e, HPS1A augments recombination frequency of extrachromosomal substrates in an in vitro recombination
265 f normal murine thymocyte development and on extrachromosomal substrates induced to undergo recombina
268 ss switch DNA recombination (CSR), including extrachromosomal switch circular DNAs and circle transcr
269 experiments that assayed recombination of an extrachromosomal switch substrate during transient trans
270 sed from the genome serves as a template for extrachromosomal synthesis of its double-stranded DNA co
272 A molecules resulted in an increased rate of extrachromosomal T-DNA to T-DNA recombination, indicatin
273 ing that establishment or maintenance of the extrachromosomal tandem repeat requires conditions that
274 the chloroplast atpB gene, maintained as an extrachromosomal tandem repeat, have recently been descr
277 associated promyelocytic leukemia bodies and extrachromosomal telomere repeats; however, no alteratio
278 recently that ALT cells have a high level of extrachromosomal telomeric circles (t circles) that may
281 yper-ALT phenotype, including an increase in extrachromosomal telomeric repeat DNAs, putative recombi
282 The break is repaired by copying DNA from an extrachromosomal template into the chromosomal site.
286 mosomal deletions, as well as integration of extrachromosomal transgenes, which complements those der
287 rmed by intermolecular recombination between extrachromosomal Ty1 cDNA molecules before or during int
289 From a single progenitor line carrying an extrachromosomal unc-54::gfp transgene array, we generat
292 ts was compared to assess directly a role of extrachromosomal vector DNA replication in Ds excision.
293 evidence for a coupling of Ds excision from extrachromosomal vector DNA to vector DNA replication in
294 transgene expression primarily results from extrachromosomal vector genomes, a series of experiments
296 that all components are present on a stable extrachromosomal vector that can replicate in a wide var
299 ed in the formation and/or maintenance of an extrachromosomal viral episome in vivo, which is likely
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