ライフサイエンスコーパス: file format

1 at as well as a new standard EMBL-Align flat file format.

2 Its outputs are visual, textual and PDB file format.

3 nd Python, for reading and writing the VDJML file format.

4 a standardized single-molecule dataset (SMD) file format.

5 le BEAST and BEAUti use exactly the same XML file format.

6 stored using the recently developed SBGN-ML file format.

7 in future as a reference for this important file format.

8 y plots may then be produced in a variety of file formats.

9 to read and write the many mass spectrometer file formats.

10 nostic and can import data from a variety of file formats.

11 ich also has more information on its use and file formats.

12 one or more secondary structures in various file formats.

13 n and supports genomics datasets in standard file formats.

14 features of source-specific data schemas or file formats.

15 ext within a figure, and creating acceptable file formats.

16 b browser as well as a variety of annotation file formats.

17 diting and visualisation options, and export file formats.

18 efinery can read and write a wide variety of file formats.

19 f genome scale data from a range of standard file formats.

20 ergence of many new methods and a variety of file formats.

21 other structural variants from new sequence file formats.

22 and can work with a wide range of sequencing file formats.

23 ist that all imaging platforms support these file formats.

24 data sets and to support a variety of input file formats.

25 as well as support for BAM and BigWig/BigBed file formats.

26 r other relational database schemas and flat file formats.

27 s and can be printed or exported in standard file formats.

28 efficiency, and it can support several input file formats.

29 ay use to convert between various proteomics file formats.

30 family of databases: access through multiple file formats, access through Application Program Interfa

31 The combination of a general file format and open source makes Java Treeview an attra

32 cing data are becoming prevalent, a standard file format and tools for working with these data conven

33 wo distributions were collected in flat text file format and using specially developed software, the

34 MR-STAR file format into its equivalent JSON file format and vice versa, and to visualize chemical sh

35 ia an advanced, high-performance, extensible file format and Web API for remote data access.

36 Results are available in text or graphic file formats and additionally can be output to relationa

37 he adoption of reference proteomes, standard file formats and benchmarking.

38 MolBioLib is designed to work with common file formats and data types used both in genomic analysi

39 ral domains) from a variety of commonly used file formats and displays them graphically.

40 brary was developed that supports Affymetrix file formats and implements two popular summary algorith

41 By supporting interoperability with multiple file formats and leveraging existing Biopython features,

42 s for reading and writing different sequence file formats and multiple sequence alignments, dealing w

43 atistical routines, tools for parsing common file formats and packages for manipulating sequences and

44 to support standard annotation and sequence file formats and produces publication-quality SVG output

45 spite the availability of numerous dedicated file formats and software packages, it is a widely held

46 ser's guide with a tutorial, a discussion of file formats and user options and additional details on

47 evelopment of phylo-grammars (using a simple file format) and automated parameterization of those gra

48 ftware tools produces results in a different file format, and can annotate the same result using diff

49 and produce an annotated sequence in Genbank file format as output.

50 ndardized files into software-specific input file formats as well as standardize and summarize infere

51 lows users to upload trace files in standard file formats, automates basecalling using phred and phra

52 ated using a single analysis program without file formats being transformed from the original.

53 ormat that can address some problems of flat file formats by defining data structure and syntax, ther

54 Given a PDB file (a Protein Data Bank file format containing the 3D coordinates of the protein

55 Finally, many output file formats facilitate the sharing of data with other p

56 add SBGN support to their tools, whereas the file format facilitates the exchange of maps between com

57 database are described using a standardized file format, facilitating data exchange.

58 FASTQ is a standard file format for DNA sequencing data, which stores both n

59 To produce an open and extensible file format for DNA trace data which produces compact fi

60 d support for a MIM-specific markup language file format for exchange with other MIM-compatible tools

61 ownloaded in numerous formats including .gmt file format for gene set enrichment analysis or as a R/B

62 ress this problem, we propose a standardized file format for representing V(D)J analysis results.

63 Adoption of a common, standard data file format for sharing raw single-molecule data and ana

64 FASTQ has emerged as a common file format for sharing sequencing read data combining b

65 tform- and language-independent hierarchical file format for which user-friendly viewers are availabl

66 AM sequence alignment files; the most common file formats for aligned next generation sequencing data

67 standards, and is capable of parsing common file formats for phylogenetic trees, performing basic tr

68 tions via Hastings ratios, and uses standard file formats for trees, alignments and models.

69 es over the past year include changes to the file format, further development of the EMBLCDS dataset

70 ADAM is able to index many commonly used file formats generated by laboratory assays and therefor

71 cid or protein sequences (FASTA) and generic file format (GFF) files of the clipped sequence reads an

72 ual studies, accommodates a variety of input file formats, handles related and unrelated individuals,

73 The OpenMSI file format has shown to provide >2000-fold improvement

74 The reference CRAM file format implementation is in Java.

75 ition, the introduction of a new, normalized file format in 2010 has made for easier handling of the

76 rom and writes to several sequence alignment file formats including both sequential and interleaved f

77 Census 2 supports multiple input file formats including MS1/MS2, DTASelect, mzXML and pep

78 Site server accepts input in common chemical file formats including SDF and SMILES and provides tools

79 CrossMap supports most of the commonly used file formats, including BAM, sequence alignment map, Wig

80 es with commonly used programs using various file formats, including BIOM, and provides operations su

81 s, COMKAT image tool supports multiple image file formats, including the Digital Imaging and Communic

82 It can read all the commonly used file formats, including the new, compact ZTR files.

83 a command-line tool to convert from NMR-STAR file format into its equivalent JSON file format and vic

84 oton-HDF5 files and convert several existing file formats into Photon-HDF5.

85 The fast and compact Skyline file format is easily shared, even for experiments requi

86 omprehensive variant annotation with diverse file formats is difficult with existing methods.

87 cerDMRI supports clinical DICOM and research file formats, is open-source and cross-platform, and can

88 Furthermore, legacy bioinformatics file formats like GenBank do not provide enough informat

89 sed Proteomics Standards Initiative standard file formats: mzML, mzIdentML, and mzTab.

90 ed the modules for working with the standard file formats Newick, NEXUS and phyloXML behind a consist

91 ive graphical input or input in the chemical file format of SMILES.

92 ften hampered by a large variety of existing file formats, often containing similar information, and

93 Dfam is also available for download in flat file format or in the form of MySQL table dumps.

94 provided without the need to convert between file formats or learn different command line interfaces.

95 ty of platforms with a myriad of proprietary file formats (PFFs).

96 atible with fasta, fastq, and specialized AS file formats presented in this manuscript.

97 FAST5 (an application of the HDF5 standard) file format produced by ONT and provides a wealth of for

98 spectrum file formats (.ucsf), XEASY proton file format (.prot), and NMR-STAR format (.star).

99 The universal qPCR data exchange file format RDML is today well accepted by the scientifi

100 cloud computing, tool installation, relevant file formats, reference genomes, transcriptome annotatio

101 The VDJML file format specification is accompanied by a support li

102 ipation from the community in developing the file format standard, as well as code contributions.

103 vendor-specific libraries and vendor-neutral file formats, such as mzXML and mzData it can be difficu

104 The OpenMSI file format supports storage of raw MSI data, metadata,

105 atasets well, and supports extensions to the file format that allow the results of additional analysi

106 atabase is traditionally available in a flat file format that has a number of known shortcomings.

107 The PDB archive is available in MMTF file format through web services and data that are updat

108 introduce Photon-HDF5, an open and efficient file format to simplify exchange and long-term accessibi

109 ain priorities: the development of tools and file formats to support segmentation (that is, the decom

110 ARKY assignment table (.shifts) and spectrum file formats (.ucsf), XEASY proton file format (.prot),

111 e provided as downloadable tables or network file formats usable in Cytoscape.

112 IRootLab can handle some of the most popular file formats used in VBS.

113 nd tools are provided to read and write many file formats used to represent bioinformatic data.

114 ns in proteins as well as parsers for common file formats using a biologically meaningful data model.

115 rates output into MS1/MS2/MS3, MGF, or mzXML file formats, which fulfills the format requirements for

116 ned for datasets in new and rapidly evolving file formats, which may lack extensive software support.

117 onment that enables users to view a range of file formats with ease.