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1 rongly dependent upon a programmed ribosomal frameshift.
2 purine pairing opposite 1,N(6)-dA and for -1 frameshifts.
3 tion of an abasic site resulted in mainly -1 frameshifts.
4 ollows a purine rule, which can also lead to frameshifts.
5 )-epsilonG induces various substitutions and frameshifts.
6 truncated gamma that is created by ribosomal frameshifting.
7 lower stem (LS) structure are important for frameshifting.
8 cipher the mechanism of programmed ribosomal frameshifting.
9 irus- or host-specific factors that modulate frameshifting.
10 the recoding site promote a precise level of frameshifting.
11 rtant role in biological functions including frameshifting.
12 ulatory and polyamine sensitizing effects on frameshifting.
13 shift site alone only supports low levels of frameshifting.
14 iple ribosomal translocation attempts during frameshifting.
15 egisters reminiscent of programmed ribosomal frameshifting.
18 alphaviruses utilize programmed -1 ribosomal frameshifting (-1 PRF) to synthesize the viral trans-fra
19 hese viruses utilize programmed -1 ribosomal frameshifting (-1 PRF) to synthesize the viral trans-fra
20 ch mechanism, termed -1 programmed ribosomal frameshifting (-1 PRF), to engineer ligand-responsive RN
23 nultimate exon of DVL1 and resulting in a -1 frameshift allele with a premature termination codon tha
25 we show that the induction of translational frameshifting also occurs under stressful conditions.
26 4 different novel variants (2 splice site, 2 frameshift and 10 missense changes) in GNB1 in 16 pediat
31 520del mutation in exon 2 that resulted in a frameshift and premature stop codon (p.Ala174Profs( *)35
33 all nine YAP1 spliceforms, and results in a frameshift and subsequent premature termination codon in
34 ORF that encodes the copper pump frequently frameshift and terminate to produce the copper chaperone
35 o deletion of 65bp, predicted to result in a frameshift and therefore a truncated protein (p.Asp298Va
36 cases (18 missense, one splice acceptor, one frameshift and two near splice regions) and five in cont
37 nfluenza A virus shift site, triggers the +1 frameshifting and is enhanced by the increased propensit
38 tential link between -1 programmed ribosomal frameshifting and response of a pseudoknot (PK) RNA to f
40 nconventional initiation, but also ribosomal frameshifting and/or imperfect repeat DNA replication, e
41 rtion or deletion errors in genes will cause frameshifts and may only lead to marginal alignment scor
42 different truncating mutations including two frameshifts and one nonsense variant in RE1-silencing tr
43 umber variants, such as hemizygous nonsense, frameshift, and missense changes in IL2RG; compound hete
44 c.1164-1G>A splice-site, p.Gln358SerfsTer13 frameshift, and p.Gln376Arg missense mutations are likel
47 ns and insertions in exon 9 inducing a -1/+2 frameshift are associated with a significant fraction of
49 els are enriched in PIK3R1 and EGFR, whereas frameshifts are prevalent in VHL, GATA3, TP53, ARID1A, P
50 , gap costs and letter abundances; and FALP (Frameshift Ascending Ladder Program) performs a similar
51 meshifting, the proportion of ribosomes that frameshift at a shift-prone site is enhanced by specific
52 al antizyme requires programmed +1 ribosomal frameshifting at the 3' end of the first of two partiall
55 phenotype due to monoallelic truncating and frameshift BMP2 variants and deletions in 12 individuals
56 y), 1 splice site (c.1282A>C p.Ser428Arg), 1 frameshift (c.470delC; p.Gly158Alafster55), and 1 nonsen
59 is in the first family detected a homozygous frameshift change [c.606delinsTA; p.(Lys202Asnfs*?)].
60 examined the impact of germline heterozygous frameshift Chd8 mutation on neurodevelopment in mice.
65 ygous variants (a large in-frame deletion, a frameshift deletion, and a missense variant) were predic
66 13 of these cases carried an identical 4-bp frameshift deletion, resulting in a truncated protein.
67 e identified 24 nonsynonymous variants and 2 frameshift deletions in CHRNA5, including 9 novel varian
68 Synthesis of a proportion of non-ribosomal frameshift derived GagPol would be relevant in efforts t
70 ormational plasticity of the high-efficiency frameshifting double mutant of the 26 nt potato leaf rol
76 The data reveal a strong correlation between frameshift efficiency and local, but not overall, RNA th
77 g genomic RNA secondary structure influences frameshift efficiency and that a mutation that commonly
78 ous, suggesting that compounds that increase frameshift efficiency by as little as 2-fold may be effe
80 oduct of our work is the suggestion that the frameshift efficiency is likely determined by the stabil
81 ype 1 (HIV-1) RNA frameshift site stem-loop, frameshift efficiency, and infectivity, using pseudotype
83 nt HIV strains to demonstrate that in cells, frameshifting efficiency is correlated with the stabilit
86 Specifically, csoS2 was found to possess -1 frameshifting elements that lead to the production of th
91 fidelity attributable to the loss of Upf (up-frameshift) factors, defective release factors, or the p
93 o accumulate, but it is unknown how dominant frameshift (fs) mutations that encode DNase-active but m
94 we demonstrate that the cancer-related UVRAG frameshift (FS), which does not result in a null mutatio
95 ns in approximately 15%, containing multiple frameshifted genes and BRAF(V600E); (2) nonhypermutated
96 testing revealed, to our knowledge, a novel frameshift heterozygous mutation in RAX2 in the patients
97 ntified an inherited 2 bp deletion causing a frameshift in BRPF1 (c.1052_1053del) in five affected fa
99 tations in KRT1, showing that a polyarginine frameshift in the keratin-1 tail can also cause this dis
103 rus virulence protein generated by ribosomal frameshifting in segment 3 of influenza virus coding for
104 a novel GFP-based method to monitor antizyme frameshifting in vivo, we show that the induction of tra
106 checkpoint inhibitor response data revealed frameshift indel count to be significantly associated wi
107 n/deleterious single-nucleotide variants and frameshift indels (that is, extreme mutations, P<4.5 x 1
108 yndrome, all variants in DVL3 result in a -1 frameshift, indicating that these highly specific altera
111 ost common strategy is the introduction of a frameshift into the open reading frame (ORF) of the targ
117 ere we show that the the trans-activation of frameshifting is carried out by a protein complex compos
120 Together with dynamic codon redefinition, frameshifting is one of the forms of recoding that enric
123 ppage site, which is important for ribosomal frameshifting, is shown here to limit reverse transcript
124 These results suggest that suppression of frameshifting may be needed in the absence of an active
125 findings elevate our understanding of the +1 frameshift mechanism and provide a useful guidance for f
129 /09 (H1N1, Cal), containing mutations at the frameshift motif in the polymerase PA gene (Cal PA-XFS).
130 and c.404T>C [p.Leu135Pro]) and the REEP6.1 frameshift mutant in cultured cells suggest that these c
131 tients with CD who were heterozygous for the frameshift mutation (6% of CD cases analyzed) had reduce
133 We tested the hypothesis that a deletion and frameshift mutation (C563fsX673) in the CEL VNTR causes
134 e been described to date, with the c.649dupC frameshift mutation accounting for the majority of cases
135 and characterization of a novel heterozygous frameshift mutation affecting the carboxy-terminus (439f
136 re, we observed that a known illness-related frameshift mutation after amino acid 807 causes the C re
137 ctivates a cryptic splice site, leading to a frameshift mutation and a premature stop codon that rend
138 tary motor neuropathy of a dominant-negative frameshift mutation at the C-terminus of choline transpo
139 he consequences of a familial PAH-associated frameshift mutation in CAV1, P158PfsX22, on caveolae ass
140 p1 or pgp2 or a reduction in curvature due a frameshift mutation in cjj81176_1105, a putative peptido
141 le-genome sequencing identified a homozygous frameshift mutation in CORO1A disrupting the last 2 C-te
142 he discovery cohort, we associated CD with a frameshift mutation in CSF2RB (P = 8.52 x 10(-4)); the f
143 on in DUOX2 that impaired its function and a frameshift mutation in CSF2RB that was associated with C
148 Restoration of pathogenicity by repair of a frameshift mutation in GPCMV gene GP129 using this appro
149 bouriffe (ebo/ebo) harbors a homozygous 2-bp frameshift mutation in Lrrc8a that truncates the 15 term
150 lele frequency of 0.1% and found a recessive frameshift mutation in MYL4 that causes early-onset atri
153 ygome/exome analysis identified a homozygous frameshift mutation in RSPRY1 with resulting nonsense-me
154 ous cell carcinomas identified a case with a frameshift mutation in SCCRO that putatively codes for a
156 f the COL13A1 c.1171delG (p.Leu392Sfs( *)71) frameshift mutation in the C2C12 cell line reduced acety
157 er disrupted the start codon or introduced a frameshift mutation in the early coding region, ensuring
160 equencing identified a heterozygous germline frameshift mutation in the gene encoding nitrogen permea
161 ailable from one patient showed a homozygous frameshift mutation in tripeptidyl peptidase II (TPP2) a
164 premature stop codon introduced by the CHADL frameshift mutation results in nonsense-mediated decay o
167 a large Israeli family revealed a homozygous frameshift mutation, c.947delA (p.Lys316Serfs( *)90), an
169 on of translation occurred downstream of the frameshift mutation, probably at the BRCA1-Met-297 codon
171 4.0 x 10(-12), odds ratio (OR) = 16.7) and a frameshift mutation, rs532464664 (p.Val330Glyfs*106), in
172 es); two siblings shared the same homozygous frameshift mutation, whereas one individual with sporadi
173 escribe a new humanized FUS-ALS mouse with a frameshift mutation, which fulfils both criteria: the FU
177 ng whole-exome sequencing, we identified two frameshift mutations (c.981_993del [p.Gln327Hisfs( *)102
178 n PTPN22 was identified, including two novel frameshift mutations (ss538819444 and rs371865329) and t
180 , we identified three independent homozygous frameshift mutations and a homozygous deletion of two ex
183 y changes: either a straight morphology from frameshift mutations and single nucleotide polymorphisms
184 tal age on base substitutions, we found that frameshift mutations and transposition events increased
185 A in which functional loss from nonsense and frameshift mutations and/or targeted deletions is observ
187 l cancers from two independent cohorts where frameshift mutations in 19 genes were analyzed and CD3(+
188 heterozygous ACTB deletions and nonsense and frameshift mutations in 33 individuals with developmenta
189 d either homozygous or compound heterozygous frameshift mutations in 4 of 33 unrelated cases of LQTS
190 de novo heterozygous missense, nonsense, and frameshift mutations in BCL11A, encoding a transcription
193 lysis of patients revealed several different frameshift mutations in intron 6 or exon 7 of KRT10.
194 rare, autosomal dominant disorder caused by frameshift mutations in KRT10 or KRT1 and characterized
196 enotype resulted from nonsense, missense, or frameshift mutations in prfA Five strains carried hly mu
197 re is thought to reflect the accumulation of frameshift mutations in sequences that are repeated with
200 ymptomatic carriers, we identified recurrent frameshift mutations in the cohesin-associated factor PD
201 ditional 1515 CD cases and 7052 controls for frameshift mutations in the colony-stimulating factor 2-
202 oth type 2P (CMT2P) has been associated with frameshift mutations in the RING domain of LRSAM1 (an E3
203 some MSI-H CRC cells despite the presence of frameshift mutations in the TGFBR2 gene because the muta
205 function as a transcription factor, or were frameshift mutations leading to TCF12 truncated for this
206 tations that fall on interfaces and nonsense/frameshift mutations that result in truncated negative r
208 sing even further when at least one of these frameshift mutations was present in all tumor cells.
212 ases were characterized by both missense and frameshift mutations, and enzymatic activity of BAP1 mis
213 he mutations include missense, nonsense, and frameshift mutations, as well as splice-site and deletio
215 Null alleles with ACC2 nonsense mutations, frameshift mutations, small deletions, genomic rearrange
216 ne repair, leading to substitution and short frameshift mutations, they are both a source of genome d
217 FOS-induced mutation was characterized by +1 frameshift mutations, which increased from 0% in control
222 ndary somatic loss-of-function (nonsense and frameshift) mutations in SAMD9 rescued the growth-restri
224 hed in olfactory receptor activity while non-frameshift (NFS) indels are enriched in transcription-re
226 suggest this may parallel the role of CREBBP frameshift/nonsense mutations in DLBCL that result in lo
232 ht function as trans-acting switches to turn frameshifting on or off in response to cellular conditio
234 LEKHM2 cDNA2156_2157delAG variant causes the frameshift p.Lys645AlafsTer12 and/or the skipping of exo
235 8*], p.[Q222*], p.[Q318*], and p.[R729*]), 2 frameshift (p.[A1048fs*13], p.[L849Afs*3]), and a splice
236 a novel viral protein expressed by ribosomal frameshifting, PA-X, was found to play a major role in i
237 RNA viruses for translational readthrough or frameshifting past termination codons for the synthesis
238 nerated a novel antibody to the unique human frameshift peptide epitope, allowing specific identifica
239 d with rhodopsin biosynthesis defects, while frameshift phenotypes were consistent with knockout.
240 Here we show that a +1 programmed ribosomal frameshift (PRF) fuses the coding sequences of two TraR-
241 ational control through programmed ribosomal frameshifting (PRF) is exploited widely by viruses and i
242 tivating a unique -2/-1 programmed ribosomal frameshifting (PRF) signal for the expression of framesh
246 tigate and characterize the role of human up-frameshift protein 1 (hUPF1), an RNA helicase and master
247 is mutation in KRT1 resulted in a C-terminal frameshift, replacing 22 C-terminal amino acids with an
248 nal tools are unable to predict a programmed frameshift, resulting in misannotation of antizyme trans
250 erichia coli dnaX gene, which contains three frameshifting signals: a slippery sequence (A AAA AAG),
251 Saccharomyces cerevisiae antizyme mRNA, the frameshift site alone only supports low levels of frames
252 a distinct pattern of conservation 5' of the frameshift site consistent with a function at the amino
253 conserved RNA secondary structure 3' of the frameshift site has weaker stimulatory and polyamine sen
255 modestly increase the local stability of the frameshift site RNA stem-loop structure increase framesh
256 amic stability of the HIV type 1 (HIV-1) RNA frameshift site stem-loop, frameshift efficiency, and in
260 purine (A, G) incorporation and extensive -1 frameshifts, suggesting pairing of the inserted purine a
262 other candidate genes (four missense and one frameshift); targeted resequencing of PTCH1 in a second
263 ibosomes translating copA undergo programmed frameshifting, terminate translation in the -1 frame, an
265 he over-reading of stop codons via ribosomal frameshifting, the existence of an antizyme and an antiz
268 1alpha-mediated splicing, which results in a frameshift to encode a protein with transcriptional acti
269 untington pathology, undergoes a sporadic +1 frameshift to generate from the CAG repeat a trans-frame
270 oviruses, utilizes a -1 programmed ribosomal frameshift to generate viral enzymes in the form of a Ga
271 ly of Pakistani origin revealed a homozygous frameshift variant (c.140delG [p.Gly47Valfs( *)3]) in ni
274 exon and consequently a transcript with this frameshift variant is not a canonical substrate for nons
276 novel amyloidogenic fibrinogen Aalpha-chain frameshift variant, Phe521Leufs, causing a severe famili
279 individuals harboring heterozygous, de novo frameshift variants in DVL3, including two splice accept
280 report on 2 patients with de novo stop-loss frameshift variants in KIF5A resulting in a novel phenot
282 n and established that germline nonsense and frameshift variants in PALB2, but not in ATM or CHEK2, c
284 In most individuals, we identified biallelic frameshift variants in the molybdopterin binding (MPTb)
285 We sought to identify rare, CD-associated frameshift variants of high functional and statistical e
286 hy affected individuals with biallelic FLAD1 frameshift variants still harbor substantial FADS activi
288 ense, 21 missense, one splice site, and five frameshift variants) that were potentially related to AL
289 We observed notable diversity, including frameshift variants, in aniA and fHbp and the presence o
290 The six variants identified include three frameshift variants, two missense variants, and a genomi
291 ers amyloidogenic properties to Aalpha-chain frameshift variants, yielding a previously unknown molec
292 In addition to confirming that clustered -1 frameshifting variants in DVL1 and DVL3 are the main con
295 tingly, during starvation, the initiation of frameshifting was independent of polyamine concentration
296 e -1 PRF strongly promote this activity, but frameshifting was significantly more efficient upon incl
298 proteins, by using a programmed -1 ribosomal frameshift which requires a slippery sequence and an imm
299 t the nascent peptide level to stimulate the frameshifting, without involving stalling detectable by
300 riants in YY1AP1, and homozygous nonsense or frameshift YY1AP1 variants were subsequently identified
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