1 The BioNetFit source code (Perl) is
freely available.
2 at utilizes the GNU Scientific Library, also
freely available.
3 The Cell Component Ontology is
freely available.
4 al techniques and other quantitative methods
freely available.
5 The relevant software is
freely available.
6 annotations, as well as the HPO itself, are
freely available.
7 und data assembled for our analysis are made
freely available.
8 Software for the approach is made
freely available.
9 but the information remains scattered or not
freely available.
10 EBONI is open source and
freely available.
11 and sample databases with documentation are
freely available.
12 rovide a description of a code we are making
freely available.
13 orporated into a searchable database that is
freely available.
14 ge implementation of SWAN is open source and
freely available.
15 are underlying our method, Coalescenator, is
freely available.
16 The datasets created in this paper will be
freely available after publication.
17 We find that, depending upon the amount of
freely available amino acid in the environment, this pai
18 Annotations from GOA are
freely available and are accessible through a powerful w
19 The database is
freely available and can be easily scaled and updated to
20 pong is
freely available and can be installed using the Python p
21 spite the widespread use of the standard, no
freely available and comprehensive programming libraries
22 It is
freely available and encompasses stand-alone scripts for
23 Towards this goal, we developed a
freely available and open-source package, called PseKNC-
24 present the R package Fragman to serve as a
freely available and platform independent resource for a
25 COCONUT is
freely available and provides a graphical user interface
26 The software is open source,
freely available,
and easily integrated into UIMA or GAT
27 er for Biotechnology Information (NCBI) is a
freely available archive for interpretations of clinical
28 ClinVar provides a
freely available archive of reports of relationships amo
29 IgRepertoireConstructor is open source and
freely available as a C++ and Python program running on
30 IgSimulator is open source and
freely available as a C++ and Python program running on
31 The HaploPOP software is
freely available as a command-line software at www.ieg.u
32 An implementation is
freely available as a Cytoscape app.
33 Our framework, named METRADE, is
freely available as a MATLAB toolbox.
34 ing K in complex biological datasets, and is
freely available as a package for R.
35 bitor and activity cliff information is made
freely available as a part of our study.
36 It is
freely available as a precompiled binary package for eve
37 ey compounds, and activity profiles are made
freely available as a resource for medicinal chemistry a
38 3 license and is
freely available as a standalone program or as a tool fo
39 epTools continue to be open to all users and
freely available as a web service at deeptools.ie-freibu
40 DynaMet is
freely available as an extension package for Python base
41 The tool is
freely available as an R package (CorrectOverloadedPeaks
42 DMRMark is
freely available as an R package at the CRAN R package r
43 The software is a command line perl script
freely available as open source.
44 phenoVein is
freely available as open-source software.
45 BEAT is
freely available as part of Bioconductor at www.biocondu
46 The updated version of TurboFold II is
freely available as part of the RNAstructure software pa
47 gorithm and a wealth of related features are
freely available as R-package enviPat and as a user-frie
48 a part of SPAdes genome assembler, which is
freely available at bioinf.spbau.ru/en/spades.
49 The package is
freely available at CRAN for easy installation, and also
50 The software is
freely available at github.com/BioContainers/.
51 accessed at www.foldatlas.com Source code is
freely available at github.com/mnori/foldatlas under the
52 The software and computed UHSs are
freely available at github.com/Shamir-Lab/DOCKS/ and acg
53 SaRa package is implemented in R program and
freely available at http://c2s2.yale.edu/software/modSaR
54 ChEpiMod is
freely available at http://chepimod.org.
55 CompMap is implemented in C and
freely available at http://csse.szu.edu.cn/staff/zhuzx/C
56 ented in PHP, Java, MySQL and Apache, and is
freely available at http://evpedia.info.
57 The package is
freely available at http://mnmccall.com/software and as
58 part of UCSF Chimera release 1.10, which is
freely available at http://rbvi.ucsf.edu/chimera/downloa
59 models for human and many other species are
freely available at http://repeatmasker.org/garlic/.
60 mented in C++ with source codes and binaries
freely available at http://sigma.omicsbio.org.
61 Freely available at http://sourceforge.net/p/bless-ec.
62 ndent Matlab implementation of the method is
freely available at http://www.ee.kth.se/ctsoftware; sou
63 The source code is
freely available at http://www.healthcare.uiowa.edu/labs
64 The source code of the program is
freely available at http://www.stats.ox.ac.uk/research/p
65 The package and additional documentation are
freely available at https://bitbucket.org/benhamlab/sist
66 d implementation: A Python implementation is
freely available at https://bitbucket.org/wanding/duprec
67 Hydra-Multi is written in C++ and is
freely available at https://github.com/arq5x/Hydra.
68 All tools and data are
freely available at PATRIC.
69 The rMATS source code is
freely available at rnaseq-mats.sourceforge.net/.
70 ToxDock is
freely available at rosie.rosettacommons.org/tox_dock.
71 Java-based ProteinVolume executable is also
freely available at this web site.
72 The AlloRep database (
freely available at www.AlloRep.org) is a key resource f
73 ck is distributed together with segemehl and
freely available at www.bioinf.uni-leipzig.de/Software/s
74 CLIC is
freely available at www.gene-clic.org.
75 mented in Python, Perl and Javascript and is
freely available at www.genomegeek.com and www.sanger.ac
76 Clonify is
freely available at www.github.com/briney/clonify-python
77 Implementation in R
freely available at www.iki.fi/mpirinen .
78 DeepSite is
freely available at www.playmolecule.org.
79 PLUMED-ISDB is
freely available at www.plumed.org.
80 PMD is now
freely available at www.proteinmicroarray.cn.
81 ies and associated educational materials are
freely available at www.rcsb.org.
82 The WGE database is
freely available at www.sanger.ac.uk/htgt/wge
83 CPAG is
freely available at www.sourceforge.net/projects/CPAG/.
84 Our method is implemented in MACAU,
freely available at www.xzlab.org/software.html.
85 The package is
freely available at: http://lin.uestc.edu.cn/server/psek
86 Our source code is
freely available at: https://github.com/kuleshov/ProbHap
87 The software is
freely available at: tanto.bioe.uic.edu/m-DiSGro.
88 ide an implementation in the open source and
freely available BioNetGen framework, but the underlying
89 All HPC-7 data sets are
freely available both through standard repositories and
90 QwikMD is
freely available by download on group and personal compu
91 seizure detection algorithms, achieved using
freely available code and data, sets a new reproducible
92 In GNPS, crowdsourced curation of
freely available community-wide reference MS libraries w
93 the application of simple (and in many cases
freely available)
computational tools can be used to dev
94 Using
freely available computer science tools (Google Books Ng
95 plicable in resource limited settings, using
freely available curriculum materials, existing programm
96 a coli by WGS is supported by user-friendly,
freely available data analysis Web tools.
97 reaks in bird populations based on existing,
freely available data.
98 InterPro is a
freely available database used to classify protein seque
99 and WikiPathways are two of the most popular
freely available databases for biological pathways.
100 The algorithm was implemented in new
freely available Dr Fit software (sourceforge.net/projec
101 c community has been hampered by the lack of
freely available,
efficient algorithms and an accompanyi
102 Here we show that
freely available environmental and geographic distance v
103 We have extended the
freely available EUROCarbDB framework to allow the submi
104 Freely available extension to ImageJ2.
105 The software is
freely available for academic laboratories.
106 The Pathway Tools software is
freely available for academic research and is available
107 sgnesR is
freely available for academic use.
108 00 Genomes Project and other projects and is
freely available for academic use.
109 pRESTO is
freely available for academic use.
110 a highly sensitive and accurate tool that is
freely available for academic use.
111 ts like MATLAB, and all its dependencies are
freely available for academic users.
112 TCGA SpliceSeq is
freely available for academic, government or commercial
113 systemPipeR is
freely available for all common operating systems from B
114 ailable web services, the code for ePlant is
freely available for any other biological species resear
115 GPMDB data and database tables are
freely available for commercial and non-commercial use.
116 These data are
freely available for download and visualization online.
117 The DECIPHER R package and source code are
freely available for download at DECIPHER.cee.wisc.edu a
118 Software is
freely available for download at genetics.cs.ucla.edu/ca
119 The software is
freely available for download at github.com/sanger-patho
120 Source code and compiled package are
freely available for download at http://apps.cytoscape.o
121 The tools are
freely available for download at http://bioinformatics.r
122 The software is
freely available for download at http://genetics.cs.ucla
123 PhyloSNP is
freely available for download at http://hive.biochemistr
124 R-code
freely available for download at http://users.ics.aalto.
125 The package TREAT is
freely available for download at http://www.hanzhang.nam
126 is open source under the MIT license and is
freely available for download at https://github.com/clcg
127 ed in a combination of Java and C/C++ and is
freely available for download at https://github.com/moza
128 in Perl, C/C++ and Java, the source code is
freely available for download at the VISTA Web site: htt
129 Source code and binaries
freely available for download at www.smoldyn.org, implem
130 The software is
freely available for download.
131 ATHENA is
freely available for download.
132 Eagle2 is open source and
freely available for HRC-based phasing via the Sanger Im
133 GEO2Enrichr is an open source tool,
freely available for installation as browser extensions
134 Executable versions of the program are
freely available for Mac OSX and Windows operating syste
135 The implementations are
freely available for non-commercial purposes.
136 The implementations are
freely available for non-commercial purposes.
137 downloads and installation instructions are
freely available for non-commercial use at https://genom
138 The SinCHet software is
freely available for non-profit academic use.
139 IsoMS for Windows running R is
freely available for noncommercial use from www.mycompou
140 SBOL Visual is a community standard,
freely available for personal, academic, and commercial
141 The gCMAP and gCMAPWeb R packages are
freely available for UNIX, Windows and Mac OS X operatin
142 While XCMS-based software is
freely available for untargeted analysis of mass spectro
143 The TargetRNA2 web server is
freely available for use at http://cs.wellesley.edu/ app
144 Availability: Phandango is a web application
freely available for use at www.phandango.net and includ
145 WebProtege is
freely available for use on the Web at http://webprotege
146 Both tools are open source (MIT license) and
freely available for use online through CoGe.
147 ed the method into R package ENmix, which is
freely available from Bioconductor website.
148 of the electromagnetic spectrum and is made
freely available from biosignatures.astro.cornell.edu.
149 into existing metabolomics pipelines and is
freely available from CRAN.
150 part of R package InfiniumPurify , which is
freely available from CRAN.
151 under the Lesser GPL, and the source code is
freely available from GitHub.
152 A zero-fill program,
freely available from MyCompoundID.org , is developed to
153 with a graphical user interface, GENFIRE is
freely available from our website and is expected to fin
154 RCSB PDB Mobile is
freely available from the Apple App Store and Google Pla
155 he method into the R package ENmix, which is
freely available from the Bioconductor website.
156 The cit open-source R package is
freely available from the CRAN website with embedded C +
157 code and documentation of the framework are
freely available from the project web site.
158 EBglmnet package is
freely available from the R archive CRAN.
159 KODAMA is
freely available from the R archive CRAN.
160 ow within the user-friendly, transparent and
freely available Galaxy platform (galaxyproject.org).
161 input, calls on several well-established and
freely available genome-analysis tools, and outputs the
162 tions to nonprofit academic users, affording
freely available high-quality, low-cost molecular weight
163 eneral English and biomedical literature are
freely available;
however, their validity as a substitut
164 EBI metagenomics is a
freely available hub for the analysis and archiving of m
165 As a
freely available ImageJ plugin that requires no highly s
166 Here, we present FiloQuant, a
freely available ImageJ plugin, to detect filopodia-like
167 It is
freely available in 20 countries (iOS and Android platfo
168 The data are
freely available in a public resource to foster diagnost
169 date collection of trait-associated SNPs are
freely available in Bioconductor
170 PINBPA app is
freely available in Cytoscape app store.
171 Source code is
freely available in Github at https://www.github.com/arq
172 ble to a broad range of study questions, and
freely available in open source software.
173 Tools to perform MultiBLUP are
freely available in our software LDAK.
174 for implementing lossless data reduction is
freely available in the Appendix.
175 dual lab to the vast amount of relevant data
freely available in the public domain might be limited d
176 The software is now
freely available in the web server of Qprob.
177 Currently >2500 foods in 22 food groups are
freely available in various NZFCDB output products on th
178 We use the
freely available LipidBlast development software to gene
179 Here, we present a new,
freely available modelling framework that includes a bio
180 Here we present PLUMED-ISDB, an open-source,
freely-available module of the popular PLUMED library, w
181 am at North Dakota State University develops
freely available multimedia materials to support molecul
182 Finally, we constructed a
freely available NPdenovo database, which provides a com
183 FlowClus is
freely available on GitHub (jsh58/FlowClus); it is writt
184 Source code is
freely available on GitHub under a GNU General Public Li
185 PIXiE is an open-source tool,
freely available on Github.
186 KCMBT is
freely available on GitHub:.
187 Software is
freely available on request.
188 l source code and a detailed usage guide are
freely available on Sourceforge.
189 tcpl is
freely available on the Comprehensive R Archive Network
190 It is
freely available on the Ensembl browser, from the Ensemb
191 Here we present FluxFix, an application
freely available on the internet that quickly and reliab
192 Freely available on the web at http://cdvist.utk.edu
193 PEASE is
freely available on the web at www.ofranlab.org/PEASE.
194 alignment applications, both commercial and
freely available ones, use the Tanimoto coefficient or s
195 The entire Database Issue is
freely available online on the Nucleic Acids Research we
196 The entire Database Issue is
freely available online on the Nucleic Acids Research we
197 The Candida Genome Database is a
freely available online resource that provides gene, pro
198 re which, together with the course materials
freely available online under a Creative Commons License
199 The density maps,
freely available online, are the first for these regions
200 CRISPulator is
freely available online.
201 cal, psychological and pathological) that is
freely available online.
202 prediction tools have been designed and made
freely available online.
203 This software is
freely available only for noncommercial users.
204 Goldilocks is
freely available open-source software distributed under
205 Transcription Fit (Tfit) is a
freely available,
open source software package written i
206 Pgltools is a
freely available,
open source tool suite for manipulatin
207 e Format Input and Output) is presented as a
freely available,
open-source library unifying the mecha
208 Implemented as a
freely available,
open-source tool in the platform indep
209 The
freely available parcellation and classifier will enable
210 It expands on an existing,
freely available pathology image viewer, Sedeen.
211 ules have been implemented in N otung 2.9, a
freely available phylogenetic reconciliation software pa
212 In addition to the
freely available Primerize-2D server, the primer design
213 e to generate linkage map graphics, none are
freely available,
produce publication quality figures, a
214 we developed Lab Retriever, an open-source,
freely available program that forensic scientists can us
215 This
freely-available program can be broadly used by biologis
216 It requires Python 2.7 and several
freely available Python packages.
217 The method has been incorporated into the
freely available R package BhGLM, providing a useful too
218 The methods have been implemented in a
freely available R package BhGLM.
219 The
freely available R package HiCRep implements our approac
220 The
freely available R package scDD implements the approach.
221 This tool is released as a
freely available R package, called RAMClustR, and is suf
222 The proposed method is implemented in a
freely available R software package PROPER.
223 inder has been implemented into a web-based,
freely available resource associated with novel, easy to
224 The ChemNetDB is a
freely available resource for systems analysis of motor,
225 lications into the Sedeen viewer to create a
freely available resource for the digital pathology and
226 The InterPro database is a
freely available resource that can be used to classify s
227 ata within the CTD to provide a centralized,
freely available resource that facilitates identificatio
228 he Adult Changes in Thought (ACT) study as a
freely-available resource.
229 Currently, there are no
freely available software applications that allow simula
230 LIQUID was compared to other
freely available software commonly used to identify lipi
231 the best of our knowledge this is the first
freely available software developed to analyze variant d
232 SCIFIO is a
freely available software library developed to standardi
233 Here, we present a
freely available software package to automatically contr
234 We describe key quality metrics, provide a
freely available software package to compute them, and d
235 ers on cine images in end systole by using a
freely available software package.
236 There are many commercial and
freely available software packages for SEM.
237 A handful of commercial and
freely available software programs exist for fragment an
238 DISSECT is a new and
freely available software that is able to exploit the di
239 An interactive and
freely available software tool was developed to allow co
240 tensive in silico fragmentation libraries of
freely available software.
241 Our network biology platform includes
freely available source code for researchers to explore
242 Two
freely available stand-alone software tools, R and AltAn
243 R source code
freely available through BioConductor.
244 Census is
freely available through our updated single-cell analysi
245 Our algorithm is
freely available through our web server and solves most
246 gkmSVM package is
freely available through the Comprehensive R Archive Net
247 Software is
freely available through the Evol component of ProDy API
248 have collected and the phenotypes scored are
freely available through the project website.
249 SIFT software, including the source code, is
freely available to academic users at http://cssb.biolog
250 The data are
freely available to accessors either as single files or
251 v2.0 has an intuitive user interface and is
freely available to all users without any login requirem
252 The server is
freely available to all users without restriction.
253 STITCHER 2.0 is
freely available to all users without signup or login re
254 r for the global PDB archive, makes PDB data
freely available to all users, from structural biologist
255 We have made VTEA
freely available to interested investigators via electro
256 The GDI server, data, and software are
freely available to noncommercial users from lab.rockefe
257 NMRbox is
freely available to not-for-profit users.
258 The AGRP is
freely available to researchers through an imputation se
259 biology of HGSC, and the ID8 cell lines are
freely available to researchers.
260 We have made these experimental resources
freely available to the academic community worldwide.
261 Zmine 2 followed by a homemade Python script
freely available to the community that clears the major
262 The toolbox is
freely available to the community under an open-source l
263 ely, our results and approach, which we make
freely available to the community, provide a framework f
264 This tool is
freely available to the research community and can be us
265 BubbleTree is R-based and
freely available to the research community.
266 tible software package, MendelScan, which is
freely available to the research community.
267 MGD resources are
freely available to the scientific community.
268 For millennia, seeds have been
freely available to use for farming and plant breeding w
269 The result, PWHATSHAP, is a
freely available toolkit that improves the efficiency of
270 However, current
freely available tools for analyzing this data are geare
271 Here, we combined 11
freely available tools into a meta-predictor (meieringla
272 ponse to this criticism, we have developed a
freely available tutorial to bridge the gap between grap
273 Its implementation is
freely available under a 2-clause BSD license, with bind
274 The code is
freely available under Apache 2.0 license at www.github.
275 mbly tools except CLC Genomics Workbench are
freely available under GNU General Public License.
276 ProDy and Evol are open-source and
freely available under MIT License from http://prody.csb
277 The source code for ICMA is
freely available under MPL 1.1 or GPL 2.0 or LGPL 2.1 li
278 with detailed instructions and examples, is
freely available under the GPL (> = 2) license from the
279 The package is also
freely available under the LGPL license from the Biocond
280 11 and only requires the Sparsehash Package,
freely available under the New BSD License.
281 All software is also
freely available,
under the Artistic License.
282 tion is available online, and source code is
freely available via GitHub.
283 The code is
freely available via http://gtfold.sourceforge.net/profi
284 endencies as a pre-configured system, and is
freely available via the installation instructions provi
285 BISQUE is
freely available via the web using any major web browser
286 The benchmark data and software are
freely available via two R/Bioconductor packages, miRcom
287 Here, we present ProteoSign, a
freely available web application, dedicated in allowing
288 ADME SARfari is a
freely available web resource that enables comparative a
289 o acid composition algorithm, we developed a
freely available web server, called PseKRAAC (the pseudo
290 We implement our method in a
freely available Web server, ExomeWalker, that displays
291 (SImple Manager for Bacterial Assemblies), a
freely available web tool that integrates several compon
292 Our
freely available web-based calculator, FluxFix, quickly
293 We have developed a
freely available Web-based ligation calculator, NP-Stick
294 The Aspergillus Genome Database is a
freely available web-based resource that was designed fo
295 and MS/MS matches have been implemented in a
freely available Website, www.mycompoundid.org .
296 ive kinase inhibitors that was recently made
freely available with the aim of expanding research in t
297 fication, provided example submission and is
freely available without any registration requirement.
298 LASAGNA-Search 2.0 is
freely available without registration at http://biogrid.
299 PrimerMapper is hosted at GitHub and
freely available without restriction.
300 SweepFinder2 is a
freely-available (
www.personal.psu.edu/mxd60/sf2.html) s