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1 pes that apparently regulate the entire rRNA gene cluster.
2 y region of the Escherichia coli kps capsule gene cluster.
3 n A2 by tailoring enzymes encoded in the btm gene cluster.
4 function due to defects in the OPN1LW/OPN1MW gene cluster.
5 tide sequence for each operationally defined gene cluster.
6 ransporter Gpy2 is encoded by the gibepyrone gene cluster.
7 genes regulated by members of the human RHOX gene cluster.
8 mX is a transcriptional activator of the adm gene cluster.
9 rin, confirming the identity of the putative gene cluster.
10 tance gene was identified in the cladosporin gene cluster.
11 m a mutant of S Montevideo, each lacking the gene cluster.
12 Gfi1b, which in turn downregulates the HOXA gene cluster.
13 fied this signal in the CHRNA5-CHRNA3-CHRNB4 gene cluster.
14 ukemogenicity including Meis1, Mn1, and Hoxa gene cluster.
15 ed by a reductive, iterative polyketide-like gene cluster.
16 ChRs) formed by the subunits encoded by this gene cluster.
17 the expression of the PKS PfmaE and the Pfma gene cluster.
18 ed transcripts identified many p53-regulated gene clusters.
19 putative specialized metabolite biosynthetic gene clusters.
20 om the primary sequences of the biosynthetic gene clusters.
21 ility to heterologously express biosynthetic gene clusters.
22 vation, conserved gene order or monophyletic gene clusters.
23 b repression such as the Hox and NK homeobox gene clusters.
24 tion defects and transcription into adjacent gene clusters.
25 rstanding of the evolution of the underlying gene clusters.
26 cording to their genomic position within Hox gene clusters.
27 fferentiated and aberrantly express homeobox gene clusters.
28 atic chromatin domains that sequester the OR gene clusters.
29 ylated regions on chromosome 6 harboring MHC gene clusters.
30 ing, which consequently created co-regulated gene clusters.
31 ll molecule elicitors of silent biosynthetic gene clusters.
32 s reveal that mcrA regulates at least ten SM gene clusters.
33 ed roles in the evolution of plant metabolic gene clusters.
34 es to identify thousands of plant-associated gene clusters.
35 e nuclear pore complex are prerequisites for gene clustering.
36 collinearity might contribute to keeping Hox genes clustered.
37 m Rhodobacter sphaeroides that comprises 120 gene clusters, 1211 genes (including 93 TFs), 1858 predi
38 rgeted identification of custom biosynthetic gene clusters across 40 000 isolate microbial genomes, a
39 ted products; a distinct aniline dioxygenase gene cluster adoQTA1A2BR, which has a broad substrate ra
41 t mutations in either the znuABC or zrgABCDE gene cluster affect bacterial growth, with znuABC mutant
43 The gene encoding HELLP is part of a three-gene cluster also encoding a lipase (SBP) and a Nod-like
44 beta-diketone biosynthesis, demonstrating a gene cluster also in the beta-diketone biosynthesis Cer-
45 he analytical tool relies on a bioinformatic gene cluster analysis and utilizes a predictive enoylred
46 into the widely used antiSMASH biosynthetic gene cluster analysis pipeline and is also available as
48 k provides detailed characterization of a TF gene cluster and advances our understanding of the trans
49 natural products that are encoded by the clb gene cluster and are produced by certain commensal, extr
51 scherichia coli expressing a heterologous GV gene cluster and purified using buoyancy-assisted techni
53 s with coding variation in 4 genes and PCDHG gene cluster and several candidate recessive alleles.
54 ssociations between the CHRNA5-CHRNA3-CHRNB4 gene cluster and smoking heaviness and nicotine dependen
55 the matrices (species) to identify the same gene cluster and the row vector specifies for each speci
56 ecific nitrogenase encoded by the large nif1 gene cluster and the similar nif2 gene cluster that func
57 entification of the seven-gene pleuromutilin gene cluster and verify that using various targeted appr
59 ing a computational approach that integrates gene clustering and network reconstruction with genetic
60 sulted in transcriptional changes in several gene clusters and a significant deregulation of 10 micro
61 ce an algorithm to catalog RiPP biosynthetic gene clusters and chart genetically encoded RiPP chemica
62 r previously characterized terpene metabolic gene clusters and demonstrate new functional pairing of
63 mechanisms that underlie the organization of gene clusters and networks, despite much effort made to
64 nome-wide synteny conservation (e.g., mobile gene clusters and nonhomologous cluster alleles), our ap
65 bases, which encompasses the sizes of genes, gene clusters and regulatory domains, the three-dimensio
66 disassembly of CBs disrupts the CB-targeting gene clusters and suppresses the expression of U sn/snoR
67 idulans for negative regulators of fungal SM gene clusters and we have used this screen to isolate mu
68 tion polymorphism in the cytidine deaminases gene cluster APOBEC3 resulting in increased expression o
69 knowledge of the features of plant metabolic gene clusters - architecture, regulation and assembly -
73 ilamentous fungal species have shown that SM gene clusters are often either highly divergent or uniqu
76 ate that signaling results in the control of genes clustered around prosurvival and proapoptotic func
77 omes of several photoarsenotrophs revealed a gene cluster, arxB2AB1CD, where arxA is predicted to enc
80 here may be from 10(5) to 10(6) biosynthetic gene clusters as yet uncharacterized for potential new t
81 s (SNPs) on chromosome 17 within a chemokine gene cluster associated with delayed onset of mild-cogni
82 or sets from all three species and comprised gene clusters associated with cell cycle and mitosis and
84 e significance, the clade B serpin (SERPINB) gene cluster at 18q21.3, the cytokine gene cluster at 5q
86 RPINB) gene cluster at 18q21.3, the cytokine gene cluster at 5q31.1, the filaggrin gene, the C11orf30
88 in durum wheat is controlled by a metabolic gene cluster at the WAX1 (W1) locus and a dominant suppr
90 nes often found within the same biosynthetic gene cluster (BGC) responsible for manufacturing the ant
91 ity in the form of 176 distinct biosynthetic gene clusters (BGCs) of which only 24 have been linked t
92 es are synthesized by dedicated biosynthetic gene clusters (BGCs), which assemble architecturally com
97 eral novel features, including prediction of gene cluster boundaries using the ClusterFinder method o
99 scription of genes in the ddhD-wzz O-antigen gene cluster, but not core oligosaccharide genes, was re
100 entify the secondary metabolite biosynthetic gene clusters by genome mining, to clone them, and to ex
101 uggested that micro-deletion of the Snord116 gene cluster can lead to PWS, however, the extent of the
102 re detailed resolution on the copy number of gene clusters can be obtained from read coverage depth u
103 bitaceae, indicates, on the other hand, that gene clustering cannot account for this novel secondary
106 , which grouped into biologically meaningful gene clusters consistent with known functional annotatio
108 treptococcus parasanguinis, is mediated by a gene cluster consisting of six genes, gtf1, gtf2, gly, g
109 treptococcus parasanguinis, is mediated by a gene cluster consisting of six genes: gtf1, gtf2, gly, g
111 econcilibacillus cellulovorans', possessed a gene cluster containing multidomain glycoside hydrolases
113 ght differences in the transfer of favorable gene clusters controlling key traits during selection br
116 previously hypothesized to contribute to SM gene cluster diversity across entire fungal classes and
117 ranscription into the opposing polycistronic gene cluster does not lead to downregulation of sense mR
119 Several Peptostreptococcus species contain a gene cluster enabling production of the tryptophan metab
121 The X-linked reproductive homeobox (RHOX) gene cluster encodes transcription factors preferentiall
124 accharide Utilization Loci (PULs) consist of gene clusters encoding different proteins with a vast ar
126 dates common microbiome-derived biosynthetic gene clusters encoding peptide aldehydes that inhibit hu
127 o identify and characterize the biosynthetic gene clusters encoding the production of such compounds.
128 rmatics, synthetic biology, and heterologous gene cluster expression can rapidly expand our knowledge
133 Here we report cloning of the biosynthetic gene cluster for the beta-lactone antibiotic obafluorin
134 iles revealed temporally distinct functional gene clusters for apoptosis, chemotaxis, and morphogenes
135 little help in prioritizing and identifying gene clusters for compounds active against specific and
138 s analysis of genome databases suggests that gene clusters for Pel biosynthesis are present in >125 b
139 le or multiple mutations in the biosynthetic gene clusters for seven natural products and two exoenzy
141 ht to be synthesized in this way via the mft gene cluster found in many strains of mycobacteria.
145 have previously cloned and sequenced the lnm gene cluster from Streptomyces atroolivaceus S-140.
146 For example, expression of a 17-kb O-PS gene cluster from the highly virulent Francisella tulare
150 logenetic analysis based on 2148 orthologous gene clusters from all isolates is consistent with patie
151 evolutionary relationships among alginolytic gene clusters from Bacteroidetes and Proteobacteria.
156 rs174448 in the fatty acid desaturase (FADS) gene cluster have opposite effects on erythrocyte LCPUFA
157 ription initiation of specialized metabolite gene clusters have been identified, those affecting tran
158 o the sequential nature of the approach, the gene clusters identified in the first step may have litt
159 fied two polymorphisms belonging to the IL-1 gene cluster (IL-1beta and IL-1ra) in strong association
162 Sequencing of the dynemicin biosynthetic gene cluster in Micromonospora chersina previously ident
163 ory receptors in vivo, we deleted the entire gene cluster in mouse germline through homologous recomb
164 -like-pteridine synthase hybrid biosynthetic gene cluster in Photorhabdus luminescens using genome sy
166 of the mouse protocadherin alpha (Pcdhalpha) gene cluster in serotonergic neurons disrupts local axon
169 ue, aprD4 and aprD3 genes from the apramycin gene cluster in Streptomyces tenebrarius were expressed
172 3 and to exemplify our method, we search for gene clusters in a dataset of 678 bacterial genomes usin
176 we show that the majority of the putative SM gene clusters in F. fujikuroi are located within faculta
177 ays that produce SMs are found in contiguous gene clusters in fungal genomes, an atypical arrangement
179 Gecko 3, an open-source software for finding gene clusters in hundreds of bacterial genomes, that com
181 ase J at specific sites within polycistronic gene clusters in L. major leads to read through transcri
182 pulation-level patterns of variation in IGHV gene clusters in larger diverse datasets and for quantit
183 covered a widespread occurrence of metabolic gene clusters in plants: 11,969 clusters from 18 species
189 in ADHD converge on biologically meaningful gene clusters, including ones now established as conferr
190 d by a halogenase encoded in the pyoluteorin gene cluster into mono- and di-chlorinated phloroglucino
191 recombineered the S. sonnei form I O-antigen gene cluster into the Ty21a chromosome to create Ty21a-S
194 l analysis of the module genes revealed four gene clusters involved in innate and adaptive immunity,
198 thetase and polyketide synthase biosynthetic gene cluster is encoded in the genomes of three anabaeno
199 in eukaryotic cells, but paradoxically, this gene cluster is found in the probiotic Nissle 1917.
201 ed gladiolin production, confirming that the gene cluster is responsible for biosynthesis of the anti
203 ing syntenic relationships among orthologous gene clusters is a frequent undertaking of biologists st
204 st propensity for heterologous expression of gene clusters, led to the identification of the novel na
206 alysis, we demonstrate how the X-linked RHOX gene cluster may function in normal human spermatogenesi
208 genomic contexts illustrate the biosynthetic gene cluster mobility that underlies the diversity and d
210 e most highly expressed secondary metabolite gene clusters (more than 244,000 base pairs deleted in t
213 revealed 5 general types of variation in SM gene clusters: nonfunctional gene polymorphisms; gene ga
215 produced by the fungus Cladosporium fulvum A gene cluster of 10 genes controls cladofulvin biosynthes
216 Cupriavidus pinatubonensis JMP134 contains a gene cluster of sqr and pdo, and their functions were an
217 tion coded for in the jadomycin biosynthetic gene cluster of Streptomyces venezuelae ISP5230, affects
222 dentified and characterized the biosynthetic gene cluster (oka) of 1 and 2, then elucidated the pathw
223 ns in the complement factor H-related (CFHR) gene cluster on chromosome 1q32 and CFHR5 mutant protein
224 protocadherin (PCDH)-alpha, -beta and -gamma gene cluster on chromosome 5 that were associated with n
226 eins encoded in experimentally characterized gene clusters on a per-protein basis and a domain-level
228 es with ROHs >3 Mb vs 19% of controls) and a gene-cluster on Chr3p21.31 (empirical P value 2 = .006-.
231 rmed from compounds produced by two separate gene clusters, one of which makes the well-known product
232 levels, all located within the CHRNA5-A3-B4 gene cluster or adjacent genes, consistent with previous
233 6 families with either a structurally intact gene cluster or at least one intact single (hybrid) gene
234 Further we tested, whether paralogs of Hox gene clusters originated from this paddlefish specific g
235 of five genes found in the ptm, but not ptn, gene cluster, partitions the biosynthesis of the PTM and
236 proteins are encoded by three closely linked gene clusters (Pcdhalpha, Pcdhbeta, and Pcdhgamma).
237 increased abundance of the diol dehydratase gene cluster (pduCDE) in Firmicutes metagenomes predicte
238 cdh) adhesion molecules encoded by the Pcdhg gene cluster play critical roles in nervous system devel
239 gene family expansions, including resistance gene clusters, predate the split of the Mesoamerican and
240 t directed genome mining methods, antibiotic gene cluster predictions and 'essential gene screening'
241 genome analysis identified 10,110 homologous gene clusters present only in a subset of strains, inclu
242 lling the expression of secondary metabolite gene clusters, ranging from epigenetic control and signa
244 ZIC2 localized at immediate early and early gene cluster regions of the KSHV genome and contributed
245 e conclude that PCDH-alpha, -beta and -gamma gene cluster regulatory variation influences the severit
247 sual cyclization steps, the phn biosynthetic gene cluster responsible for herqueinone biosynthesis wa
248 Streptomyces chromofuscus ATCC49982, and the gene cluster responsible for its biosynthesis was identi
249 cing revealed the putative type I polyketide gene cluster responsible for selvamicin's biosynthesis i
253 th rice, while the phytoalexin momilactone A gene cluster specifically to infection by pathogenic Pyr
254 e function of representative A. fumigatus SM gene clusters, such as those involved in the production
255 t locations or were exchanged with unrelated gene clusters suggesting a plug and play type model of e
259 scherichia coli contain the clb biosynthetic gene cluster that codes for small molecule prodrugs know
260 inked to a plasmid-borne Bacillus megaterium gene cluster that contains four genes: oxsA, oxsB, oxrA
261 large nif1 gene cluster and the similar nif2 gene cluster that functions under anaerobic conditions i
262 I contains the toxin-coregulated pilus (TCP) gene cluster that is necessary for colonization of the h
263 etoplastids are organized into polycistronic gene clusters that are flanked by the modified DNA base
264 production is the abundance of biosynthetic gene clusters that are not expressed under typical labor
265 xpression analysis indicated the presence of gene clusters that co-vary over different genetic backgr
267 ptome analyses identified markedly different gene clusters that reflected the tumorigenic and angioge
268 s the infarcted heart enabled us to identify gene clusters that share a comparable expression profile
269 natural products are organized as metabolic gene clusters, thereby unveiling a highly unusual form o
271 lation of expression of secondary metabolite gene clusters to increase the diversity of metabolites t
272 for rapidly recombining polyketide synthase gene clusters to replace, add or remove modules that, wi
273 variation in terms of codon-usage within the gene cluster, together with the dislocated domain organi
275 of CTL responses revealed uniquely expressed gene clusters upon encountering hepatoma target cells pr
276 s sequenced and the responsible biosynthetic gene cluster was identified by bioinformatic analysis an
278 the cloned Salmonella Choleraesuis O-antigen gene cluster was introduced into three constructed Salmo
279 that a defective repression of the miR-17-92 gene cluster was responsible for evolution of a selectio
280 far cryptic and otherwise silent putative SM gene clusters was induced in the KMT6(kd) strain, in whi
281 only a 400-kb deletion, including the whole-gene cluster, was eventually able to merge the neighbori
282 sms and copy number variation of the FCGR2/3 gene cluster were studied in a FCGR-specific multiplex l
285 is exemplified in the rapamycin biosynthetic gene cluster where, in a single experiment, multiple str
286 ignaling pathways and formation of embryonic gene clusters, whereas the NS5A TCR activation induced e
287 mensal Escherichia coli harbor the 54-kb clb gene cluster which codes for small molecules named preco
288 common functional polymorphisms in the IL-1 gene cluster, which are associated with the inflammatory
289 mentation mutants, a new fungal pigmentation gene cluster, which contains Mr-Pks1, Mr-EthD and Mlac1
291 ired to form BMCs are typically organized in gene clusters, which promoted their distribution across
293 de polymorphisms (SNPs) in the CHRNB3-CHRNA6 gene cluster with ND in a Chinese Han population (N = 5,
294 s to exchange all native promoters in silent gene clusters with constitutively active promoters.
295 d to encode vast collections of biosynthetic gene clusters with diverse chemical potential, almost no
300 s and Relevance: In this analysis, candidate genes clustered within gene networks that were associate
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