ライフサイエンスコーパス: genome analysis

1 ral DNA repair pathways by transcriptome and genome analysis.

2 Five potential chitinases were identified by genome analysis.

3 enome is an important challenge for personal genome analysis.

4 on the basis of ancestry derived from whole-genome analysis.

5 eat genome have been substantial barriers to genome analysis.

6 logenies congruent with those based on whole genome analysis.

7 ium (LD) blocks, genes, or pathways in whole-genome analysis.

8 r binding sites is an important challenge in genome analysis.

9 their identification remains a challenge for genome analysis.

10 nity resource for comparative and functional genome analysis.

11 n would complement other approaches to human-genome analysis.

12 r both pre-computed and user-supplied custom genome analysis.

13 iation studies and applicable to comparative genome analysis.

14 re routine clinical application of CLL whole-genome analysis.

15 escape detection with current approaches to genome analysis.

16 aleable molecular confinement approaches for genome analysis.

17 rmatics platform, with tools and viewers for genome analysis.

18 es in two closely related species in a whole-genome analysis.

19 cine max (soybean) present challenges during genome analysis.

20 es and their performance in several tasks of genome analysis.

21 me shotgun sequencing approach for microbial genome analysis.

22 ary to enable the pipeline to scale to whole-genome analysis.

23 standards that are essential for comparative genome analysis.

24 d within clade 3, based on phylogenetic core genome analysis.

25 standards that are essential for comparative genome analysis.

26 ge amounts of repetitive DNA that complicate genome analysis.

27 s represents a central focus of contemporary genome analysis.

28 quences from related species for comparative genome analysis.

29 ted by the sequence read length during whole-genome analysis.

30 ecome a very useful high throughput tool for genome analysis.

31 y high potential to become a useful tool for genome analysis.

32 allow for wide-ranging application of whole-genome analysis.

33 nd is useful both in gene-specific and whole-genome analysis.

34 ure curation, computational text mining, and genome analysis.

35 re different analytical strategies from bulk genome analysis.

36 llelization required for concurrent multiple genome analysis.

37 aching and training in the area of microbial genome analysis.

38 S) is very important for conducting in-depth genome analysis.

39 those available for multispecies comparative genome analysis, 40,224 cattle BAC clones were end-seque

40 80%) are lower than those obtained by whole-genome analysis (68 to 87%).

41 ity and reduced costs of sequencing has made genome analysis accessible to more and more researchers.

42 Advances in genome analysis, accompanied by the assembly of large pa

43 Since previous whole genome analysis also revealed TATA elements upstream of

44 Genome analysis also reveals that P. gingivalis can meta

45 ought together substantial advances in human genome analysis and a maturation of understanding of tum

46 Here, we present a new comparative genome analysis and a thorough genetic analysis of SSV1

47 , teaching courses and training in microbial genome analysis and analysis of genomes related to the H

48 We have addressed this disparity between genome analysis and biological evidence through a struct

49 ecovery was evaluated by quantitative vector genome analysis and cellular transduction assays.

50 By using genome analysis and deletion experiments, the biosynthet

51 Finally, we perform a full human genome analysis and discover that 35.5% of human promote

52 The ERGO genome analysis and discovery suite is an integration of

53 e insertion and deletions (<10 Kb) for whole genome analysis and DNA mixtures.

54 el fish species should facilitate structural genome analysis and evolutionary studies, but more impor

55 in a sequenced genome is essential both for genome analysis and for realization of the goals of syst

56 provide a natural framework for comparative genome analysis and functional annotation.

57 user interface to access a number of common genome analysis and gene structure tools, preconfigured

58 On the basis of genome analysis and homeodomain identity, we propose tha

59 genomes becomes an important goal of cancer genome analysis and investigations into mechanisms respo

60 Whole-genome analysis and laboratory experiments revealed a hi

61 used for a variety of applications including genome analysis and metabolic engineering.

62 functional variants, we employed comparative genome analysis and obtained evidence for the existence

63 Here we show by comparative genome analysis and phylogenetic reconstruction of 229 i

64 By comparative genome analysis and subsequent polymerase chain reaction

65 gene transfer (HGT) revealed by comparative genome analysis and their theoretical implications.

66 highlight its adaptive strategies, based on genome analysis and transcriptome profiling.

67 Multidimensional cancer genome analysis and validation has defined Quaking (QKI)

68 focusing on developing automatic comparative genome analysis and visualisation.

69 ap for map-based gene isolation, comparative genome analysis, and as a source of sequence-ready clone

70 h microsatellite genotyping, a mitochondrial genome analysis, and deep sequencing of the DFTD transcr

71 ion of gene-expression profiles, comparative genome analysis, and gene-disruption assays should permi

72 l genes and presages future studies by whole-genome analysis; and (3) a functional genomics approach

73 t on several public databases and a suite of genome analysis applications are provided as exemplary g

74 In this study, a whole-genome analysis approach was used to identify three diff

75 Whole-genome analysis approaches are identifying recurrent can

76 dentified and many substances predicted from genome analysis are inaccessible due to their life stage

77 Based on genome analysis as well as the results from previous gen

78 gned to automate the main steps in microbial genome analysis-assembly, gene prediction, functional an

79 resource on microbial and plant pathways for genome analysis, basic research, education, metabolic en

80 resource on microbial and plant pathways for genome analysis, basic research, education, metabolic en

81 As whole-genome sequencing for cancer genome analysis becomes a clinical tool, a full understa

82 Genome analysis becomes a two-step process: using a prio

83 We performed comparative genome analysis between zebrafish and medaka, common car

84 The draft genome analysis broadly expands our knowledge on the bio

85 Whole-genome analysis by 62-strain microarray showed variation

86 f Plasmodium falciparum and subsequent whole-genome analysis can be used to find the targets of some

87 As comparative genome analysis can provide novel insights into gene evo

88 This demonstrates that whole-genome analysis can track in fine detail the behavior of

89 sed only through conjecture, including whole genome analysis, can now be studied directly.

90 e already only feasibly stored at specialist genome analysis centers.

91 Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and fa

92 Thus, prediction based on genome analysis combined with isolation and structural c

93 Comparative genome analysis confirmed that a new EV-D68 strain belon

94 Whole genome analysis, confirmed at the protein level, reveale

95 The Mouse Genome Analysis Consortium aligned the human and mouse g

96 poB, sodA, and recN genes; comparative whole-genome analysis; conventional biochemical and Rapid ID 3

97 n outbreak isolates from the E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium website, and a

98 Successful genome analysis depends on the quality of gene predictio

99 The genome analysis described here provides new insights int

100 HGVA serves as a proof-of-concept of the genome analysis developments being carried out by the Un

101 psychiatric disorders are resistant to whole-genome analysis due to genetic and etiological heterogen

102 stimulation were investigated by using whole-genome analysis, ELISA, and flow cytometry.

103 Family-based genome analysis enabled us to narrow the candidate genes

104 Genome analysis facilitated the further classification o

105 his study we performed an integrative, whole-genome analysis for discovery of epigenetically activate

106 t advances in genome sequencing, comparative genome analysis, functional genome exploration, and the

107 The genome analysis further identified a putative ion-transl

108 Large-scale phenotyping and genome analysis further show strong industry-specific se

109 roduce isoprenoids from mevalonate; however, genome analysis has failed to identify several genes in

110 Within plants, this is controversial, as genome analysis has identified 56 putative GPCRs, includ

111 lution; however, the full potential of whole-genome analysis has not been realized because of inadequ

112 However, additional genome analysis has provided a more conservative suggest

113 Comparative genome analysis has revealed a new family of B. burgdorf

114 Firstly, genome analysis has revealed the great diversity of CPs,

115 phenotype annotation followed by individual genome analysis has the potential to identify genetic mo

116 thods successfully exploited for prokaryotic genome analysis have proved difficult to apply to eukary

117 Results of genome analysis have revealed differences between animal

118 C region was highly congruent with the whole-genome analysis; hence, sequencing of just this one regi

119 Pan-genome analysis identified 10,110 homologous gene cluste

120 Genome analysis identified a number of novel sequence ty

121 Genome analysis identified a number of putative virulenc

122 The data derived from the global genome analysis identified phospholipase C-delta1 as an

123 The genome analysis identified the chromosomal locations of

124 Whole-genome analysis identified the presence of a homozygous

125 Kyoto Encyclopedia of Genes and Genomes analysis identified six enriched pathways.

126 Genome analysis identifies extremely streamlined metabol

127 pidly advance to become platforms capable of genome analysis if elements of a nascent system can be i

128 Computation may become the bottleneck of genome analysis if growing alignment costs are not mitig

129 aching and training in the area of microbial genome analysis (IMG/EDU).

130 Here, we use whole-genome analysis in 37 fly species belonging to 22 differ

131 ed at Argonne National Laboratory, for whole genome analysis in a platform designed to better match c

132 ying a framework for large-scale comparative genome analysis in catfish.

133 An unbiased genome-to-genome analysis in chronic hepatitis C virus (HCV) infec

134 This has provided a powerful tool for genome analysis in large-genome unsequenced agricultural

135 approaches to accelerate gene discovery and genome analysis in maize: methylation filtration and hig

136 Similarly, our whole-genome analysis in rodents indicates an approximately tw

137 Genome analysis in two other related species, Noccaea ja

138 Modern whole-organism genome analysis, in combination with biomass estimates,

139 Genome analysis indicated that the new species Brucella

140 Genome analysis indicates that this organism relies upon

141 Genome analysis indicates that this organism shares more

142 Viral genome analysis indicates unusually low CpG dinucleotide

143 Comparative genome analysis is a powerful tool that can facilitate t

144 Information derived from pathogen genome analysis is providing tools for use in diagnosis

145 However, most genome analysis is typically confined to the nuclear gen

146 ic predictions on the scale needed for whole-genome analysis is, however, extremely computationally d

147 Genome analysis, knockout studies and structural compari

148 Large-insert genome analysis (LIGAN) is a broadly applicable, high-th

149 ntative prokaryotes and eukaryotes and a new genome analysis method that makes it possible to reconst

150 Here, we developed a single-cell genome analysis method that reconstructs genome-wide hap

151 developments in sequencing technologies and genome analysis methods for application in personalized

152 We review and compare three whole-genome analysis methods that use mixed linear models (ML

153 hway knowledge to support genome annotation, genome analysis, modeling, systems biology, basic resear

154 pathway knowledge to support basic research, genome analysis, modelling, systems biology and educatio

155 Advances in genome analysis, network biology, and computational chem

156 Using proteonomic genome analysis, new candidate tumor markers have been i

157 Whole-genome analysis of 11 sexual and 11 asexual genotypes of

158 olates and conduct the largest bacterial pan-genome analysis of 249 genomes.

159 Through whole genome analysis of 257 individuals, we demonstrated arti

160 Here, we report the comparative genome analysis of 29 taxonomically and biotechnological

161 Furthermore, the whole-genome analysis of 30 individuals (42-fold deep coverage

162 Here, we report a whole-genome analysis of 331 Sd1 isolates from around the worl

163 nt fC-CET, a bisulfite-free method for whole-genome analysis of 5fC based on selective chemical label

164 Here we present the first such whole genome analysis of 60 globally distributed strains, from

165 Here we report the whole-genome analysis of a cartilaginous fish, the elephant sh

166 However, using whole-genome analysis of a global collection of clinical isola

167 This study presents whole-genome analysis of a homogenous isolate population with

168 A recent comprehensive whole genome analysis of a large breast cancer cohort was used

169 Whole-genome analysis of a methicillin-resistant S. aureus (MR

170 Genome analysis of a sex locus and other gene clusters h

171 Our study is a whole-genome analysis of all protein-coding genes in 12 Drosop

172 irst report of transcriptome and chloroplast genome analysis of any Anacardiaceae family member.

173 We present the genome analysis of barley powdery mildew, Blumeria grami

174 ctive ligninolysis, we conducted comparative genome analysis of C. subvermispora and P. chrysosporium

175 tion sequencing techniques which allow whole genome analysis of chromatin structure and sequence-spec

176 The results have implications for genome analysis of diverse organisms, including the huma

177 Here we report a whole-genome analysis of DNA methylation profiles in fresh-fro

178 Using a systematic, whole-genome analysis of enhancer activity of human-specific e

179 However, a comparative genome analysis of Francisella tularensis allowed us to

180 A comprehensive whole-genome analysis of gene function by transposon mutagenes

181 By the whole genome analysis of genes and polymorphisms, we found tha

182 croarray analysis to provide the first whole-genome analysis of genes regulated by ATF4 in cancer cel

183 Whole-genome analysis of H3N2 viruses isolated from pigs from

184 in this study) was used for systematic whole-genome analysis of Halobacterium sp. NRC-1 and several o

185 e explained by markers was 0.06 in the whole genome analysis of IBK incidence classified as two, thre

186 genomic islands (RDIs), using a comparative genome analysis of meningitis-causing E. coli K1 strain

187 Thus, genome analysis of Msa. thermophila presents new researc

188 Complete genome analysis of Mycoplasma pneumoniae revealed the pr

189 We report here a detailed, whole-genome analysis of one such infection, that of a cystic

190 Genome analysis of other epidemic ST313 isolates from Ma

191 SOILoCo provides a powerful tool for de novo genome analysis of outcrossing species.

192 Whole-genome analysis of PM1 revealed an approximately 4-Mb ci

193 genome (~8 Gb) and its regional importance, genome analysis of rye has lagged behind other cereals.

194 Finally, we apply the device to genome analysis of single cells and microbial consortia

195 Genome analysis of strain W83 reveals a range of pathway

196 ding was mirrored by data obtained from full-genome analysis of strains sequentially cultured from no

197 In this review, we present a genome analysis of the Arabidopsis two-component element

198 to presenting results of the first complete-genome analysis of the breakthrough infections in the RV

199 ned molecular analyses and comparative whole genome analysis of the most diverse of the bullfrog stra

200 We show here that whole-genome analysis of the parasite can be achieved directly

201 Here, the full-genome analysis of the prototype HAdV-C6 and a recently

202 Whole genome analysis of this bacterial strain revealed the pr

203 Our Dendrix algorithms scale to whole-genome analysis of thousands of patients and thus will p

204 a few loci in many strains or low-resolution genome analysis of three clonal lineages.

205 Whole-genome analysis of three viral isolates (11SB17, 11SB19

206 Here we report a whole-genome analysis of two animals originating from extreme

207 nd is well suited for whole-transcriptome or genome analysis of uncharacterized plants.

208 We performed a 121-marker, total genome-analysis of an F2[Dahl RxS]-intercross selected f

209 on of enzymatic sequences in newly sequenced genomes, analysis of organism-specific metabolic network

210 enables estimation of the divergence between genomes, analysis of their evolution and detection of pa

211 g bacterial infection, we performed complete genome analysis on three newly isolated multidrug-resist

212 ntified polymorphisms is too small for whole genome analysis or studies of quantitative trait loci.

213 able) set of standard database-searching and genome-analysis packages.

214 mining pipeline, Integrative Next-generation Genome Analysis Pipeline (inGAP), guided by a Bayesian p

215 gement system capable of executing automated genome analysis pipelines at a massive scale.

216 such as VCF, for compatibility with existing genome analysis pipelines.

217 cing (NGS) data, and for constructing custom genome analysis pipelines.

218 SpeedSeq is an open-source genome analysis platform that accomplishes alignment, va

219 SC Genome Browser and the Galaxy large-scale genome analysis platform.

220 Consistently with physiology, the genome analysis points to F. acidiphilum Y(T) having an

221 , as genomic technologies move towards whole-genome analysis, policy arguments for patent protection

222 New genome analysis presented here reveals further features

223 Compared with present single cell genome analysis, probing the protein content of single c

224 e of the major findings of ENCODE, and other genome analysis projects, is that the human transcriptom

225 oduct was achieved by using a combination of genome analysis, promoter exchange, isotopic labeling ex

226 reesei in its competitive soil habitat, but genome analysis provided little mechanistic insight into

227 In conclusion, mt genome analysis provided new insights into the phylogeny

228 nch of chordopoxvirus so far discovered, the genome analysis provided substantial insight into the ev

229 Genome analysis provides insights into the organism's co

230 didate genes made available by comprehensive genome analysis requires that relatively rapid technique

231 Whole genome analysis requires the alignment and comparison of

232 Genome analysis revealed 27 genes possibly linked to the

233 Genome analysis revealed 39 c-type cytochromes, includin

234 Genome analysis revealed a link between its endophytic l

235 Genome analysis revealed an open reading frame predicted

236 Genome analysis revealed genes that likely encode the id

237 Comparative whole genome analysis revealed high sequence homogeneity among

238 Genome analysis revealed many genes with potential roles

239 Whole-genome analysis revealed substantial diversity within ST

240 Comparative genome analysis revealed that maize depends on a single

241 Genome analysis revealed the existence of 29 putative gl

242 uences already existing in public databases, genome analysis reveals a significantly higher degree of

243 Comparative genome analysis reveals the absence of all three approxi

244 ult to characterize, but this is changing as genome analysis reveals their genes, and methylome analy

245 Southern blots and genome analysis show that Sp-SPCA is a single copy gene.

246 Genome analysis showed that Leishmania species, unlike T

247 Kyoto Encyclopedia of Genes and Genomes analysis showed that the ribosome pathway was si

248 We conclude that large-scale genome analysis shows that miRNAs have many more unique

249 TimeZone, a genome analysis software package, is designed to detect

250 lt to identify by other approaches to cancer genome analysis, such as downstream targets of commonly

251 Intriguingly, the genome analysis suggests a closer phylogenetic relations

252 Genome analysis suggests that RIP has had a profound imp

253 Comparative genome analysis suggests that TICAM1 and TICAM2 evolved

254 of optical mapping, a single-molecule, whole-genome analysis system, to discover new structural varia

255 Here we develop a computational approach to genome analysis that searches for widely separated genes

256 high-throughput method for single-cell whole-genome analysis that was used to measure the genomic div

257 From genome analysis this mechanism is both ancient and wides

258 detailed view of the current state of human genome analysis through a focus on one large gene family

259 is study demonstrates the necessity of whole-genome analysis to complement population/gene-based stud

260 Here, we used whole genome analysis to establish clusters of genes expressed

261 To fill this void, we utilize comparative genome analysis to identify candidate enhancer elements

262 We have used comparative genome analysis to identify genes that are specific to M

263 y, we combined a public health approach with genome analysis to provide insight into the correlation

264 We performed a comparative genome analysis to systematically estimate recent lineag

265 The Prokaryotic-genome Analysis Tool (PGAT) is a web-based database appl

266 variant quality score recalibration from the Genome Analysis Tool Kit and the RNA-seq variant-calling

267 e2, and Novoalign--and four variant callers--Genome Analysis Tool Kit HaplotypeCaller (GATK-HC), Samt

268 resulting data processed and annotated with Genome analysis Tool.

269 rform as well or better than the widely used Genome Analysis Toolkit (GATK) in all key measures of pe

270 Here, we discuss our Genome Analysis Toolkit (GATK), a structured programming

271 ive different variant detection programs-The Genome Analysis Toolkit (GATK), CRISP, LoFreq, VarScan,

272 processed by standard read aligners and the Genome Analysis Toolkit (GATK), longer indels have still

273 es by synthesizing variant features from the Genome Analysis Toolkit and allele dosage information.

274 pair using the Burrows-Wheeler Aligner, the Genome Analysis Toolkit, and MuTect packages.

275 uding the UnifiedGenotyper included with the Genome Analysis Toolkit, samtools and FreeBayes.

276 lication of these tools, instantiated in the Genome Analysis Toolkit, to deep whole-genome, whole-exo

277 eal when compared with those produced by the Genome Analysis Toolkit.

278 equences provide templates for the design of genome analysis tools in orphan species lacking sequence

279 Its design allows the development of novel genome analysis tools, such as the Resistance Gene Ident

280 everal well-established and freely available genome-analysis tools, and outputs the most likely causa

281 stent with those obtained from computational genome analysis, two-dimensional gel electrophoresis, an

282 Whole-genome analysis using any categorisation of (two, three

283 Median time to genome analysis was 5 days (range 3-153) and median time

284 Whole genome analysis was performed using the Ilumina Human HT

285 eration approach for noninvasive fetal whole-genome analysis was validated in a pregnancy diagnosed w

286 Employing whole-genome analysis we have characterized a large family of

287 By genome analysis we identified the genes for seven compon

288 t overcoming the existing limitations in CLL genome analysis, we have analyzed high-purity DNA isolat

289 y combining this approach with computational genome analysis, we identified hts (heme transport syste

290 Using comparative genome analysis, we identified multiple genomic regions

291 Using complete genome analysis, we sequenced five bladder tumors accrue

292 The pan-genome analysis, whereby the size of the gene repertoire

293 s been designed as a powerful tool for whole genome analysis which offers multiple advantages: one ca

294 nonmodel species such as catfish, functional genome analysis will have to rely heavily on the establi

295 Whole-genome analysis with ChIP and DNA microarray analysis (C

296 th "paired-end" methods, has enabled a whole-genome analysis with essentially unlimited resolution.

297 echococcus sp. WH8102, through a comparative genome analysis with two other cyanobacterial genomes, P

298 y of RCA-RCA make it a powerful new tool for genome analysis with unique advantages over previous amp

299 this problem by a combination of comparative genome analysis with verification experiments in the mod

300 trics have recently been used in comparative genome analysis, yet challenges remain in finding an app