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1 nomes are now completed and available in the Genome database'.
2 each input Yeast protein (SGD (Saccharomyces Genome Database).
3 ilable in the NCBI nucleotide and MIPS Wheat Genome Databases).
4 ent by blast analysis of the Ustilago maydis genome database.
5 s of interest for the collage from a Pathway/Genome Database.
6 genome sequence into a community-accessible genome database.
7 largest secreted protein identifiable in any genome database.
8 quency of 5252 dinucleotide repeats from the Genome Database.
9 ng a DHHC-CRD motif was found in the Giardia genome database.
10 dentified an additional 67 loci in the human genome database.
11 annotations supplied with the Saccharomyces genome database.
12 gy annotations produced by the Saccharomyces Genome Database.
13 nce regions from records of the RefSeq human genome database.
14 erase chain reaction and searching the mouse genome database.
15 he corresponding sequence in the Arabidopsis genome database.
16 ction for cDNA sequence not available in the genome database.
17 ction Junction provided by the Saccharomyces Genome Database.
18 y completed Plasmodium falciparum strain 3D7 genome database.
19 match randomly one or several proteins in a genome database.
20 logs are found in the Caenorhabditis elegans genome database.
21 teolytic peptide masses of the proteins in a genome database.
22 ast open reading frames in the Saccharomyces Genome Database.
23 are absent from N. meningitidis strain Z2491 genome database.
24 random tryptic peptide maps generated from a genome database.
25 chitinase gene, PfCHT1, in the P. falciparum genome database.
26 versity of Oklahoma A. actinomycetemcomitans genome database.
27 ces obtained from the Caenorhabditis elegans genome database.
28 gnificant homology to any known genes in the genome database.
29 the sequence databases, OMIM, and the Mouse Genome Database.
30 ssible electronically from the Saccharomyces Genome Database.
31 cerol acyltransferases (PDATs) from the flax genome database.
32 quencing for comparison against a B. hermsii genome database.
33 isplayed through CottonDB, the public cotton genome database.
34 DNA, are examined here using the Tetrahymena genome database.
35 ardiovascular disease and obesity at the Rat Genome Database.
36 erent transcripts that were not annotated in genome databases.
37 ently annotate eukaryotic genomes and create genome databases.
38 insertion for polymorphism within the human genome databases.
39 thm for searching sequences of SNPs in large genome databases.
40 n with the Celera and public (Ensembl) mouse genome databases.
41 s of its inactivation by mining human cancer genome databases.
42 es that cause disease by investigating whole-genome databases.
43 educed for these from sequences in the human genome databases.
44 tion of different protein families in public genome databases.
45 d generates FBA models directly from Pathway/Genome Databases.
46 ed Chado schema for compatibility with other genome databases.
47 and classification of new SLRP sequences in genome databases.
48 ng data from GenBank and the human and mouse genome-databases.
49 hways in the Kyoto Encyclopedia of Genes and Genomes database.
50 orresponding regions retrieved from the 1000 Genomes database.
51 ntology and Kyoto Encyclopaedia of Genes and Genomes databases.
52 logy and the Kyoto Encyclopedia of Genes and Genomes databases.
53 ent in 100 control subjects or in dbSNP/1000 Genomes databases.
54 ikely homology links are missing between the genome-databases; 10-20% of entries classified as 'genes
56 We recently identified from the Drosophila genome database a large family of G protein-coupled rece
57 dase was used to identify in the P. furiosus genome database a putative prolidase-encoding gene with
58 yme was used to identify, in the P. furiosus genome database, a gene (PF1861) that encodes a product
59 ase was used to identify, in the P. furiosus genome database, a gene that encodes 383 amino acids.
62 ng the sequence available at the Pseudomonas genome database, an open reading frame (ORF), flanked by
66 onary time of capture, we searched the plant genome database and discovered other closely related CYP
67 rresponding entries within the Saccharomyces Genome Database and International Nucleic Acid Sequence
68 aged software developed by the Saccharomyces Genome Database and the Generic Model Organism Database
69 racterize all RT-like sequences in the human genome database and to annotate the gene complement of t
72 AT-like transposase sequences extracted from genome databases and found that the hAT superfamily is d
73 is a collaborative effort among model plant genome databases and plant researchers that aims to crea
74 longer sequence reads and the development of genome databases and user-friendly pipelines for data an
75 e variants observed at most once in the 1000 Genomes database and having a minor allele frequency bel
76 ologs of E. coli mutM nei genes in the human genome database, and characterize one of their products.
77 tM/Nei were recently identified in the human genome database, and one of these, NEH1, was characteriz
78 cDNA ends with PCR, sequences from the Human Genome databases, and in vitro transcription/translation
79 fication of L1s that are absent from current genome databases, and we show that some of these L1s can
80 recently the next-generation platforms, the genome databases are growing at an astronomical rate.
83 me-databases; links between the sequence and genome-databases are missing for another 5-10% of the ca
86 aeruginosa is documented in the Pseudomonas genome database as encoding a 172 amino acid hypothetica
89 the homolog of p40 identified from the yeast genome database, associates with the yeast Arp2/3 comple
93 oves tools for identifying gene functions in genome databases by defining the essential sequence-stru
94 tomatically analyzes LTR retrotransposons in genome databases by searching for structural features ch
101 2215Y and R2505P, identified in human cancer genome database confer constitutive activation of mTOR s
102 variant complexes according to the available genome databases, consistent with the previous finding o
103 Both tools have access to the extensive CoGe genome database (containing over 30 000 genomes) as well
107 types of data that are now available in the Genome Database, demonstrates how the database is interc
108 found when zfIFN was used to search the fugu genome database, demonstrating that zfIFN can be used to
114 a client/server relationship with the Fungal Genome Database (FGDB), and as a web-browsing tool for t
115 alysis of quality scores across major public genome databases find that around 68% of the genomes are
116 The Arabidopsis Information Resource is a genome database for Arabidopsis thaliana, an important r
117 ce, we surveyed the Jackson Laboratory Mouse Genome Database for knockout mouse strains and their phe
122 signaling pathway, we searched the bacterial genome database for proteins with homology to the Toll/i
127 and FANCL), and identified orthologs in the genome database for the pufferfish Tetraodon nigroviridi
132 -directional links between HGMD and both the Genome Database (GDB) and Online Mendelian Inheritance i
134 localized to a 0.2 cM interval of the Mouse Genome Database genetic map, identifying tightly linked
137 recently completed C. trachomatis serovar D genome database has revealed C. trachomatis ORFs encodin
142 A search of the Saccharomyces cerevisiae genome database identified FAB1, a gene encoding a PIP k
147 controls and from all public exome and whole genome databases, including the 1000 Genomes database (w
148 Examination of the developing L. pneumophila genome database indicated that the organism has two othe
165 presented in Kyoto Encyclopedia of Genes and Genomes database (KEGG) pathways than in Gene Ontology d
166 LTR retrotransposon family (Ta-1), the human genome database likely provides only a partial picture o
167 15% of genes are apparently missing from the genome-databases; links between the sequence and genome-
168 rces currently integrated include: the Mouse Genome Database (MGD) and Gene Expression Database (GXD)
169 he Mouse Oncochip Design Tool uses the Mouse Genome Database (MGD) developed and maintained by the Ja
184 ional database and integrated with the Mouse Genome Database (MGD) to enable global analysis of genot
191 rization of novel homing endonucleases using genome database mining to identify putative target sites
195 e glands, the same number as is found in the genome database of the fly, Drosophila melanogaster, vs.
197 he corresponding gene (CHIA) can be found in genome databases of a variety of mammals, but the enzyme
198 Hidden Markov models were used to search the genome databases of A. fumigatus, A. flavus, A. terreus,
199 The latter finding was unexpected since genome databases of trypanosomatid parasites appeared to
200 omously replicating bacteria in their hosts' genome databases or from the reagent contamination.
201 tide Polymorphism database (dbSNP), the 1000 Genomes database, or the Centre d'Etude du Polymorphisme
205 stitute employed this tool to create pathway/genome databases (PGDBs) for 165 organisms, available at
206 database collection is a set of 160 pathway/genome databases (PGDBs) for most eukaryotic and prokary
207 collection of 5700 organism-specific Pathway/Genome Databases (PGDBs), each containing the full genom
208 ollection of >3000 organism-specific Pathway/Genome Databases (PGDBs), each containing the full genom
212 of mouse genomic organization with the Human Genome Database predicted the exon/intron boundaries of
221 Examination of the Integrated Microbial Genomes database revealed that orthologs of the dga gene
224 predicted genes were integrated into the Rat Genome Database (RGD) and can serve as an important reso
238 , using the annotations in the Saccharomyces Genome Database (SGD) and in FlyBase as training data.
239 unctional annotations from the Saccharomyces Genome Database (SGD) and other phenotypic annotations f
240 ernal resources, including the Saccharomyces Genome Database (SGD) and relevant publications at PubMe
243 lable on an ongoing basis, the Saccharomyces Genome Database (SGD) has created the Genome Snapshot.
244 antage of these projects, the SACCHAROMYCES: Genome Database (SGD) has created two new tools, Functio
245 GO) annotations curated by the Saccharomyces Genome Database (SGD) have facilitated the development o
251 and complexes derived from the Saccharomyces Genome Database (SGD) than the results of seven popular
252 formation and has prompted the Saccharomyces Genome Database (SGD) to enhance the depth and accessibi
253 in pathways retrieved from the saccharomyces genome database (SGD), and the outcomes of clustering th
256 ches of the recently released M. brevicollis genome database showed that this species has three uniqu
259 At http://soybeangenome.siu.edu the Soybean Genome Database (SoyGD) genome browser has, since 2002,
261 DPR cyclases have been reported in any plant genome database, suggesting either that there is a uniqu
262 in yeast, plant, worm, insect, and mammalian genome databases, suggesting that Erf2 plays a role in R
264 ated with new data obtained by searching the genome databases, suggests that the area code hypothesis
265 ccharomyces Genome Database, the Tetrahymena Genome Database (TGD) integrates the wealth of knowledge
268 agreement with in silico search of the mouse genome database that mapped the PAP7 cDNA sequence to th
269 ogic software, we created VchoCyc, a pathway-genome database that predicted 171 likely metabolic path
270 syltransferase (GT) sequences from the grape genome database that show similarity to Arabidopsis (Ara
271 pathway prediction program to create Pathway/Genome Databases that can be augmented with curation fro
273 ructure and programming of the Saccharomyces Genome Database, the Tetrahymena Genome Database (TGD) i
274 n be retrieved directly from the Ae. aegypti Genome Database through the World Wide Web: http://klab.
275 features not readily available through other genome databases to bioscientists looking for gene relat
276 ression patterns, with data available in the genome databases to produce a fine-detailed transcript m
282 Arabidopsis thaliana and Medicago truncatula genome databases using SPADA, most of which have RNA-Seq
283 w members of an ncRNA gene family in a large genome database, using both sequence and, importantly, R
285 addition to the annotations provided in the genome database, we add 956 additional annotations to pr
286 MDBK clone with sequence data from the human genome database, we have determined that this cDNA repre
288 y updated integration of genomic data with a genome database, web front end, API and server scripts.
289 nt in the unpublished Pseudomonas aeruginosa genome database, where the complete Pseudomonas supraope
290 d whole genome databases, including the 1000 Genomes database (which includes data from Africa).
291 e insertional history of Ta-1 than the human genome database, which lacked approximately 40% of our c
292 set of 4879 proteins from the Saccharomyces Genome Database whose interactions were also recorded in
293 proteins was identified from the Drosophila genome database with a computer algorithm that identifie
296 alpha and beta subunits were located in the genome database within a putative 14-gene operon (termed
297 action data available from the Saccharomyces Genome Database (www.yeastgenome.org) and the database o
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