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1 ancient organisms that lack large amounts of genomic DNA.
2 p dsDNA analytes, including both plasmid and genomic DNA.
3 ive cell birth dating measuring carbon-14 in genomic DNA.
4 that mediate the conversion of A*T to G*C in genomic DNA.
5 reventing the hyper-negative supercoiling of genomic DNA.
6 of protein-DNA interactions on synthetic and genomic DNA.
7 en the expanded repeat RNA and complementary genomic DNA.
8 n assessing global modification abundance in genomic DNA.
9 ng IGS sequencing data with RFLP analysis of genomic DNA.
10 and reduced the levels of oxidized bases in genomic DNA.
11 ization, providing a mechanism for accessing genomic DNA.
12 intaining the placement of nucleosomes along genomic DNA.
13 3 KIR genes and HLA-A, HLA-B, and HLA-C from genomic DNA.
14 s can be processed to extract high yields of genomic DNA.
15 patients by means of targeted sequencing of genomic DNA.
16 data, which is related to the copy number of genomic DNA.
17 judged from binding competition against bulk genomic DNA.
18 catalyzes cytosine methylation of mammalian genomic DNA.
19 3 hypervariable region from Escherichia coli genomic DNA.
20 result in accumulation of ribonucleotides in genomic DNA.
21 om whole-genome amplification of single-cell genomic DNA.
22 centrations of variant alleles (1%) in human genomic DNA.
23 is required for TLR9 activation by bacterial genomic DNA.
24 ften involve amplifications and deletions of genomic DNA.
25 iptional consequences from ribose-containing genomic DNA.
26 s an initial quality assessment of amplified genomic DNA.
27 FIP registry for whole-exome sequencing from genomic DNA.
28 profiling of ribonucleotide incorporation in genomic DNA.
29 to identify the sequence of cut sites within genomic DNA.
30 on of approximately 30 copies of the CaMV35S genomic DNA.
31 ure of target DNA from a pool of interfering genomic DNA.
32 stranded breaks (DSBs) in murine macrophage genomic DNA.
33 moval of UV-induced direct photolesions from genomic DNA.
34 ctivity by controlling its ability to access genomic DNA.
35 nely evaluated with a PCR-based method using genomic DNA.
36 reposition and reorganize nucleosomes along genomic DNA.
37 etion and reduced the L1-mediated nicking of genomic DNA.
38 pecific amplification by directly sequencing genomic DNA.
39 es and sequences the 4.8-Mbp MHC region from genomic DNA.
40 med Cas9 locates the target site by scanning genomic DNA.
41 ed DNAs, including circular plasmid DNAs and genomic DNAs.
42 l factories localized with replicating viral genomic DNAs.
44 ct human genomic DNA down to a mass of human genomic DNA (5.5 picograms) that is roughly equal to the
45 -kb fragment from different sources of human genomic DNA, a 1.9-kb fragment was sometimes coamplified
51 The limits of detection were 0.5ng/ml of genomic DNA and 10 colony-forming units (CFU)/ml of bact
52 xes in eukaryotes that provide compaction of genomic DNA and are implicated in regulation of transcri
53 ) and 5 x 10(4) cells/ml were obtained using genomic DNA and bacterial culture from M. capricolum sub
54 S patients, which indeed accumulate rNMPs in genomic DNA and exhibit markers of constitutive PRR and
55 od for separation and parallel sequencing of genomic DNA and full-length polyA(+) mRNA from single ce
58 important cytosolic sensor of P. falciparum genomic DNA and reveal the role of the cGAS/STING pathwa
61 st abundant non-canonical component of yeast genomic DNA and their persistence is associated with a d
62 cleotides that have a specific target on the genomic DNA and their signals are derived from specific
63 e of the MinION nanopore sequencer using M13 genomic DNA and used expectation maximization to obtain
64 ease in OGG1-sensitive oxidized bases within genomic DNA, and a decrease in 8-oxoG cleavage activity
66 PCR analysis revealed presence of bacterial genomic DNA, and infection elicited significant immunogl
67 druplex structures may act as 'knots' within genomic DNA, and it has been hypothesized that proteins
68 -reporter mice, polymerase chain reaction of genomic DNA, and quantitation of Bmp6 messenger RNA expr
69 rich sequences that are excised from damaged genomic DNA are proposed to enter the cytoplasm where th
70 ymerase chain reaction (qPCR) to detect HAdV genomic DNA as a means to quantify attachment and genome
71 and hydroxyl radicals in vivo, and protected genomic DNA as well as sensitive enzymes from intracellu
72 e ribonucleoside monophosphates (rNMPs) into genomic DNA at a low level and such rNMPs are efficientl
74 method for the electrochemical detection of genomic DNA, based on the employment of two sub-micron o
75 d with various concentrations of Aspergillus genomic DNA before extraction following international re
76 T or LGT) is the transmission of portions of genomic DNA between organisms through a process decouple
78 in complementation version of DamID, to mark genomic DNA bound in vivo by interacting or juxtapositio
79 re anucleate cytoplasmic fragments that lack genomic DNA, but continue to synthesize protein using a
80 geal specimens were tested for HBoV mRNA and genomic DNA by quantitative polymerase chain reaction.
85 le blood proves that the large mass of human genomic DNA captured from the lysed cells does not inhib
86 ated gold-nanoparticles interacting with the genomic DNA captured in the fiber channels (0%, 0.1%, 1%
90 eral layers of regulation prevent collateral genomic DNA damage by restricting RAG activity to the G1
92 plasma DNA sequencing data with the parental genomic DNA data and using a series of bioinformatics fi
93 e, we demonstrate that Plasmodium falciparum genomic DNA delivered to the cytosol of human monocytes
94 ple invasion-suppressor miRNAs by inhibiting genomic DNA demethylation by direct targeting of TET1, t
95 s for the selective and ultrasensitive human genomic DNA detection, directly extracted from lymphocyt
97 ws the RDM-based pinwheel assay detect human genomic DNA down to a mass of human genomic DNA (5.5 pic
98 cumented using plasmid, viral, or fragmented genomic DNA; dPCR performance with more complex material
101 The ability to rewrite large stretches of genomic DNA enables the creation of new organisms with c
103 mosome (BAC) reporters using human and mouse genomic DNAs encompassing the TERT genes and neighboring
106 red to those of the other three assays using genomic DNA extracted from 40 adultDermacentor variabili
107 ratio method to determine telomere length in genomic DNA extracted from buccal smears from 63 patient
108 It can detect <10 copies of the gene in genomic DNA extracted from E. coli or K. pneumoniae clin
109 hole-exome sequencing (WES) was performed on genomic DNA extracted from fresh-frozen whole blood and
112 The technique involves fragmentation of genomic DNA followed by adapter ligation, bisulfite conv
113 for this purpose, which utilizes shearing of genomic DNA followed by specific PCR amplification of tr
114 d with various concentrations of Aspergillus genomic DNA for extraction, following international reco
115 ocking of MGE transmission through releasing genomic DNA for homologous recombination while simultane
116 100 cross-linked cells for ChIP or 500 pg of genomic DNA for MeDIP (compared to 10(6)-10(7) cells for
119 s observation, we combined CRISPR/Cas9-based genomic-DNA-fragment editing with chromosome-conformatio
120 pproaches, microfluidic partitioning of long genomic DNA fragments and barcoding of shorter fragments
121 Enrichment for Sequence Analysis), isolates genomic DNA fragments in microfluidic droplets and perfo
122 newly designed primers were evaluated using genomic DNA from 11Rickettsiaspecies belonging to the sp
124 we performed mate pair sequencing (MPseq) on genomic DNA from 24 PDAC tumors, including 15 laser-capt
128 DNA libraries are constructed using native genomic DNA from any source of interest, preserving cell
132 lective amplification of Wolbachia pipientis genomic DNA from infected Drosophila melanogaster and My
135 non-pregnant and pregnant female donors and genomic DNA from maternal buffy coat and placenta sample
136 oned from the patient as well as in cDNA and genomic DNA from other individuals, suggesting that gene
138 The concept was proved on analysis of the genomic DNA from PC-3 cells and DNA isolated from melano
143 t AID is transiently in spatial contact with genomic DNA from the time the nuclear membrane breaks do
146 frequency of insertions was compared between genomic DNA (gDNA) collected from cells in the biofilm a
147 rmore, the technique can successfully target genomic DNA (gDNA) fragments of length >500 bp, and it c
148 uNPs), we have developed a novel unamplified genomic DNA (gDNA) nanosensor, exploiting dispersion and
150 owever, inclusion of noncoding components of genomic DNA (gDNA) such as introns may help promote more
152 NA) of specific pathogen species relative to genomic-DNA (gDNA) of the same species (P:G ratios) are
153 nt amplification and, together with maternal genomic DNA, genotyped for approximately 300,000 single-
155 rchitecture using purified components: yeast genomic DNA, histones, sequence-specific Abf1/Reb1, and
156 Papa-B exon 2 and 3 were determined from the genomic DNA in 255 fecal samples, minimally representing
158 ction methods to unspecifically process long genomic DNA in a short time frame, e.g. for pathogen det
159 lian CD59 genes to identify the only span of genomic DNA in C. porcellus that is homologous to a port
165 lective isolation of a gene of interest from genomic DNA in yeast followed by its direct transfer to
168 The assay requires just picogram levels of genomic DNA input, is sensitive and specific enough to d
171 We confirmed that RAG1/2 also mobilizes genomic DNA into independent physiological breaks by ide
176 virus terminase complex cleaves concatemeric genomic DNA into unit lengths during genome packaging an
182 ient (Mili(-/-)) mice demonstrate that brain genomic DNA is preferentially hypomethylated within inte
185 rough a vast excess of competing, unmodified genomic DNA, is a mechanistic challenge that may limit t
186 We performed bisulfite sequencing PCR of genomic DNA isolated from HBV-related HCCs and HBV repli
188 is protocol has been successfully applied to genomic DNA isolated from primary cell culture, sorted c
189 They conducted quantitative real-time PCR on genomic DNA isolated from tumor and matched normal biops
190 alable single-step approach performed at the genomic DNA level in solution that combines with most do
191 over, lambda-exo digestion of nonreplicating genomic DNA (LexoG0) enriches GC-rich DNA and G4 motifs
193 els of gene expression by carrying the whole genomic DNA locus of a gene including its regulatory ele
194 Our results suggest coincidence of massive genomic DNA losses and increased power of genetic drift,
196 ous generation of interstrand cross-links in genomic DNA may contribute to aging, neurodegeneration,
198 ent discovery on how double-strand breaks of genomic DNA mediate the rapid induction of activity-depe
199 H2 mutant expression caused both histone and genomic DNA methylation changes that can be reversed whe
200 del is sensitive enough to detect changes in genomic DNA methylation levels as a function of growth p
202 The epigenetic information encoded in the genomic DNA methylation pattern is translated by methylc
207 emonstrate in this study that IL-26 binds to genomic DNA, mitochondrial DNA, and neutrophil extracell
210 ral modified bases have been observed in the genomic DNA of bacteriophages, prokaryotes, and eukaryot
211 formation of O(4)-POBdT in naked DNA and in genomic DNA of cultured mammalian cells exposed with NNK
213 ymethylcytosine, and 5-formylcytosine in the genomic DNA of human CMSCs isolated from diabetic donors
216 provirus gene-editing were confirmed by cell genomic DNA PCR and fluorescent marker expression analys
219 hermore, high-throughput sequencing of human genomic DNA pulled down by the biotin-labeled tandem tet
220 DNA sequences, linear or circular DNA, bulk genomic DNA, recombinant or native Drosophila core histo
222 s ribonucleoside monophosphates (rNMPs) from genomic DNA, replacing the error with the appropriate de
226 Transfection of human PBMC's with TTSuV1 genomic DNA resulted in productive viral infection which
227 alysis of mutated target sequences and human genomic DNA reveal that Cascade recognizes an extended p
230 d wnt7b, estimated from direct sequencing of genomic DNA samples of injected lamprey larvae, were 68/
234 inder model without fitting parameters, with genomic DNA sequence being the only input, we further va
238 PCR method in diagnostics, we amplify human genomic DNA sequences from a approximately 1 muL droplet
246 iments using this method to sequence E. coli genomic DNA showed that the TGIRT enzyme has surprisingl
247 ant nucleoid-associated proteins at numerous genomic DNA sites and stabilization of distinct long-ran
248 t electrophoretic processing of unfragmented genomic DNA strands is time-consuming, because of the le
249 controlled generation of long single-strand genomic DNA substrates, we show that the mutation signat
250 scriptional factories with replicating viral genomic DNA suggests that KSHV assembles an "all-in-one"
251 Large-scale sequencing of prokaryotic (meta)genomic DNA suggests that most bacterial natural product
253 otype information using up to 100 times less genomic DNA than some methods and enables the accurate d
254 ic marker is randomly transposed in vitro in genomic DNA that is then used for natural transformation
255 Abasic (Ap) sites are common lesions in genomic DNA that readily undergo spontaneous and amine-c
256 Genedrive PCR amplification was tested with genomic DNA; the performance of the complete (sample pro
257 ine dimers (the major UV-induced lesions) in genomic DNA; the quantum yield of these dimers in TEL21/
259 stranded DNA molecules to invade and replace genomic DNA through two joint illegitimate recombination
260 SMASH utilizes random fragmentation of input genomic DNA to create chimeric sequence reads, from whic
262 and single molecule real-time sequencing on genomic DNA to determine these target sequences and thei
264 will enable the mapping of 5-fU and 5-hmU in genomic DNA, to provide insights into their functional r
266 ents from multiple PCR assays, on four human genomic DNAs treated with four endonuclease restriction
267 hly mutagenic DNA adduct that forms in human genomic DNA upon reaction with methylating agents of die
269 We verified the presence of the mutations in genomic DNA using a combination of molecular inversion p
270 he physical separation of polyA(+) mRNA from genomic DNA using a modified oligo-dT bead capture and t
271 on gene expression by parallel processing of genomic DNA using bisulfite and oxidative bisulfite conv
272 junctions are cloned directly from isolated genomic DNA using LAM-PCR and unidirectionally ligated t
273 te whole-genome amplification of single-cell genomic DNA using linear nucleic acid amplification.
275 ed information is available on the amount of genomic DNA variation between HSV-2 strains because only
276 horylation state in complete (containing the genomic DNA) versus empty (genome-free) HBV virions.
277 AP) sites are generated at high frequency in genomic DNA via spontaneous hydrolytic, damage-induced o
278 ues were collected 14 months after delivery; genomic DNA was analyzed by PCR to detect the Dnajb1-Prk
290 be a consequence of Brownian movement of the genomic DNA, which would be rectified and harnessed by t
291 isolating and lysing single cells, digesting genomic DNA with a methylation-sensitive restriction end
293 Here, we demonstrate that pre-treatment of genomic DNA with CRISPR-Cas9 nucleases to generate doubl
295 m for efficient, programmable replacement of genomic DNA with long (>100-kb) synthetic DNA, through t
297 triphosphates (rNTPs) are incorporated into genomic DNA with relatively high frequency during normal
298 ing DNA methylation involve the treatment of genomic DNA with sodium bisulfite; however, this method
299 allows stable labeling and monitoring of HIV genomic DNA within infected cells during cytoplasmic tra
300 GA from 10(6) cells or approximately 1 ng of genomic DNA yielded high-quality coverage detecting near
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