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1 n the intestinal wall of all rats (including germ free).
2 ate-term fetal piglets or piglets maintained germ-free.
4 s present even in sterile rat embryo islets, germ-free adult rat islets, and neogenic tubular complex
5 aised (CONV-R) counterparts, and mice reared germ free and then colonized with CONV-R gut microbiota
8 mic, biochemical, and physiologic studies of germ-free and cocolonized Gpr41-/- and +/+ littermates d
9 diated diversification operate comparably in germ-free and conventional mice, indicating these unique
12 onic tip and crypt epithelial fractions from germ-free and conventionally raised mice and from mice d
14 temic infection with Listeria monocytogenes, germ-free and oral-antibiotic-treated mice display incre
15 induced inflammation in wild-type mice, and germ-free and Pseudomonas fluorescens-monoassociated int
16 ause wild-type (WT) colonic macrophages from germ-free and specific pathogen-free (SPF)-derived mice
19 ith a complete gut microbiota or were reared germ-free and then cocolonized as young adults with two
20 ective role was observed in conventional and germ-free animal facilities, indicating that it does not
24 cally, we show that gut dendritic cells from germ-free animals are reduced in the ability to stimulat
27 ystem, with for example the observation that germ-free animals harbor a poorly developed intestinal i
30 experimental models of these diseases and in germ-free animals that help us understand the mechanisms
37 ed with conventionally reared axin1 mutants, germ-free axin1 mutants exhibit decreased intestinal epi
39 rmite), and human-derived bacteria colonized germ-free bystander mice before mouse-derived organisms.
40 iota or a mouse cecal microbiota, along with germ-free "bystanders," revealed the success of particul
47 with methods for raising these animals under germ-free conditions can be used to monitor microbial mo
49 ensal bacteria, because mice re-derived into germ-free conditions expressed significantly less Nod2 i
52 Ig infusion, and analysis of mice raised in germ-free conditions reveal a negative feedback mechanis
53 Re-derivation of HDAC3(DeltaIEC) mice into germ-free conditions revealed that dysregulated IEC gene
54 bserved that under specific pathogen-free or germ-free conditions, intragastric administration of Pse
63 ata with those from other symbioses, such as germ-free/conventionalized mice and zebrafish, revealed
64 e acidic region was significantly reduced in germ-free Drosophila, indicative of a role of the gut ba
65 r PI3K p110delta, wild-type mice raised in a germ-free environment markedly up-regulated colonic PI3K
67 Based on studies using rodents raised in a germ-free environment, the gut microbiota appears to inf
70 l enterocolitis does not occur in a sterile (germ-free) environment and is prevented and treated by b
73 st variation in colonization when individual germ-free flies were fed their own natural commensals (i
78 , in contrast to mice with a gut microbiota, germ-free (GF) animals are protected against the obesity
80 tributes to tumor distribution, we generated germ-free (GF) Apc(Min/+) and Apc(Min/+) ;Il10(-/-) mice
82 report that I/R-induced intestinal injury in germ-free (GF) C57BL/6 wild-type (WT) mice is worse than
83 re housed in specific pathogen-free (SPF) or germ-free (GF) conditions and weaned onto diabetes-promo
84 ly attenuated in the K/BxN mouse model under germ-free (GF) conditions, accompanied by reductions in
85 h broad-spectrum antibiotics (Abx) or use of germ-free (GF) donors and recipients resulted in prolong
88 ntrast to specific pathogen-free (SPF) mice, germ-free (GF) mice are resistant to Concanavalin A (Con
91 host microbiota to microglia homeostasis, as germ-free (GF) mice displayed global defects in microgli
92 crobiota in specific pathogen-free (SPF) and germ-free (GF) mice given more than 40 unique diets; we
93 ensals are not required for T1D progression, germ-free (GF) mice had a very low degree of sialitis, w
94 ination with CT, both antibiotic-treated and germ-free (GF) mice had reduced amounts of antigen-speci
98 Comparisons of conventionally raised and germ-free (GF) mice revealed a similar degree of allergi
99 er maturation upon bacterial colonization of germ-free (GF) mice that have implications for studies o
100 report that colonization of sexually mature germ-free (GF) mice with conventional specific pathogen-
103 tiation factor 88-deficient (MyD88(-/-)) and germ-free (GF) mice, but not IL-1R(-/-) mice, exhibit im
107 he intestinal microbiota using mice that are germ-free (GF) or humanized (ex-GF mice colonized with h
108 gene expression, we evaluated mice that were germ-free (GF) or humanized (HM; ex-GF colonized with hu
109 PH by partial portal vein ligation (PPVL) in germ-free (GF) or mice colonized with altered Schaedler'
111 ng zebrafish and relative ease of generating germ-free (GF) zebrafish make it an attractive model org
113 ion from the disease: MyD88-negative mice in germ-free (GF), but not in specific pathogen-free condit
114 typically, and functionally compared between germ-free (GF), specific pathogen-free, and GF mice reco
116 owth promotion phenotype is transferrable to germ-free hosts by LDP-selected microbiota, showing that
117 on tissue sections from immunocompromised or germ-free hosts, chronically infected hosts where the ti
121 ree and specific pathogen-free Il10(-/-) and germ-free Il10(-/-);Rag2(-/-) mice were infected with C.
124 stages of development or mono-association of germ-free larvae with individual constituents of the mic
132 llus reuteri This species induced DP IELs in germ-free mice and conventionally-raised mice lacking th
134 duced mechanical hyperalgesia was reduced in germ-free mice and in mice pretreated with antibiotics.
137 versal-dependent and could be transferred to germ-free mice by fecal microbiota transplantation.
139 obiota from TLR5-deficient mice to wild-type germ-free mice conferred many features of metabolic synd
143 al microbiota, as antibiotic-treated mice or germ-free mice did not transmit infectious virus to thei
145 ed in interleukin (IL)-10(-/-) and wild-type germ-free mice during transition to a conventional micro
149 Despite persistence of light-dark signals, germ-free mice fed low or high-fat diets exhibit markedl
150 emale twin pairs discordant for obesity into germ-free mice fed low-fat mouse chow, as well as diets
155 This study demonstrated that EHEC colonizes germ-free mice in large numbers, adheres to the intestin
157 Transplantation of the cold microbiota to germ-free mice is sufficient to increase insulin sensiti
158 d restored the reduced transport observed in germ-free mice known to have a marked reduction in intes
162 ally contains hundreds of bacterial species, germ-free mice mono-associated with a single Bacteroides
164 R4(-/-)) or Myd88 (Myd88(-/-)), in wild-type germ-free mice or wild-type mice depleted of the microbi
165 ation by using antimicrobials or gnotobiotic germ-free mice overrides these protective benefits.
166 tration of specific microbial metabolites to germ-free mice promotes neuroinflammation and motor symp
168 Transfer of Ahr(-/-) microbiota to wild-type germ-free mice recapitulated the increase Verrucomicrobi
169 ith a favorable gut microbiome as well as in germ-free mice receiving fecal transplants from respondi
170 d functions of iNKT cells in germ-free mice, germ-free mice reconstituted with specified bacteria, an
172 er, in vivo administration of NOD1 ligand to germ-free mice restored the numbers of hematopoietic ste
173 microbiota transplants from MS patients into germ-free mice resulted in more severe symptoms of exper
174 exposure to polymer-rich luminal fluid from germ-free mice strongly compressed the mucus hydrogel, w
176 ota, activated a DUOX2 response in recipient germ-free mice that corresponded to abnormal colonizatio
177 opulation in both specific pathogen-free and germ-free mice that has not been described previously.
178 mpared through competition experiments in ex-germ-free mice that were either treated with omeprazole,
179 or undernourished Malawian donors into young germ-free mice that were fed a Malawian diet revealed th
180 RNA sequencing of luminal microbiota from ex-germ-free mice to show that inflamed Il10(-/-) mice main
183 fy their levels in the caecum of control and germ-free mice using two independent mass spectrometry m
184 ther, comparing cutaneous gene expression in germ-free mice vs. conventionally raised mice suggests t
185 s or mice (IBD, metabolic syndrome, etc.) to germ-free mice was found to be sufficient to transfer so
186 ing gut microbial community structure, adult germ-free mice were colonized with a consortium of 15 se
191 explore this association, we colonized young germ-free mice with a consortium of bacterial strains cu
192 this trait is transmissible: colonization of germ-free mice with an 'obese microbiota' results in a s
193 of Archaea to digestive health, we colonized germ-free mice with Bacteroides thetaiotaomicron, an ada
196 in a mammalian gut environment, we colonized germ-free mice with microbial communities from human, ze
199 ally, we demonstrate that supplementation of germ-free mice with short-chain fatty acids, major produ
201 hted by anatomical and functional changes in germ-free mice, affecting the gut epithelium, immune sys
202 btained through the use of gene-deficient or germ-free mice, and discuss new potential therapeutic ap
203 l studies employing dietary choline or TMAO, germ-free mice, and microbial transplantation collective
204 ells derived from specific pathogen-free and germ-free mice, and stratify cells into phenotypic subpo
205 airment of antiviral immunity was evident in germ-free mice, but neutralization of Ym1, a chitinase-l
207 DR was localized to the surface epithelia of germ-free mice, but to crypt epithelial cells in convent
209 IgA responses can be recapitulated in young germ-free mice, colonized with faecal microbiota obtaine
210 EGFP, CCR2(-/-), CD11c-EYFP, CD11c-EYFP-DTR, germ-free mice, CX3CR1(gfp/gfp), CX3CR1(gpf/wt), and CX3
212 , phenotypes, and functions of iNKT cells in germ-free mice, germ-free mice reconstituted with specif
214 diabetic mice; when transferred to recipient germ-free mice, oral microbiota from IL-17-treated donor
215 ve effects were lost in both Ifnar1(-/-) and germ-free mice, revealing essential roles for type I int
216 hese mucosal responses were also observed in germ-free mice, showing that they are independent of the
217 nase inhibitor blunted lactate production in germ-free mice, suggesting that lactate was predominantl
219 al bacterial composition and, by transfer to germ-free mice, that the oral microbiota of diabetic mic
221 +) intraepithelial lymphocytes purified from germ-free mice, their conventionally raised (CONV-R) cou
222 phenotypic markers and by their presence in germ-free mice, these preexisting memory-like CD44(hi) C
224 ensal colonization in antibiotic-treated and germ-free mice, using cultured commensals from the Actin
226 n this issue of the JCI, Li et al. show that germ-free mice, when chemically castrated, do not lose b
227 ow longitudinally the urine metabolome of ex-germ-free mice, which are colonized with two bacterial s
251 t is dependent on commensal microbes because germ-free MyD88-negative NOD mice develop robust diabete
252 bust diabetes, whereas colonization of these germ-free MyD88-negative NOD mice with a defined microbi
256 ed in specific-pathogen-free conditions into germ-free Nlrp12-deficient mice showed that NLRP12 and t
262 m cancer patients who responded to ICIs into germ-free or antibiotic-treated mice ameliorated the ant
268 ing (beta7 integrin-/-), enteric microbiota (germ-free), or active for immune colitis (G alpha i2-/-
270 ion was very low in fetal IPP and the IPP of germ-free piglets but increased 3- to 5-fold after colon
274 gnificant decrease in serum triglycerides in germ-free rats fed a high sugar diet compared to convent
276 the microbiota from Card9(-/-) to wild-type, germ-free recipients increases their susceptibility to c
279 (+) nTh17 cells are present in the thymus of germ-free RORgammat-gfp and IL-6(-/-) RORGamma: t-gfp mi
280 flora by fecal material transplantation into germ-free SAMP and the presence of the gut microbiome in
281 ignificantly increased in the ilea of 80% of germ-free SAMP1/Fc mice examined compared with specific
285 nce an altered environment compared with the germ-free system that includes reduced pH, depletion of
287 oPP to Il10(-/-) mice before transition from germ-free to SPF conditions reduced their development of
288 slocation via these two routes, we colonized germ-free transgenic mice expressing the human enterocyt
290 regulation of DUOX2 in intestinal tissues of germ-free vs conventional mice, mice given antibiotics o
296 ferences in the number of secretory cells in germ-free zebrafish and their conventional counterparts,
299 d-type, and interleukin (Il)10(-/-) mice and germ-free zebrafish embryos were colonized with specific
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