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1 se) and DNA repair enzymes (e.g., uracil-DNA glycosylase).
2 pair pathway initiated by human alkyladenine glycosylase.
3 lational modification of the human MutYH DNA glycosylase.
4 o inactivation of MUTYH, which encodes a DNA glycosylase.
5 e (MnSOD) and mitochondrial 8-oxoguanine DNA glycosylase.
6 instead depends, in part, on the thymine DNA glycosylase.
7 se interrogation during lesion search by DNA glycosylases.
8 ar DNA translocation by two human DNA repair glycosylases.
9 The first step in BER is catalyzed by DNA N-glycosylases.
10 d breaks by lesion-specific endonucleases or glycosylases.
11 promiscuity, such as these two unrelated DNA glycosylases.
12 (G) are substrates for repair by various DNA glycosylases.
13 are repair intermediates of bifunctional DNA glycosylases.
14 l inhibition of other DNA repair enzymes and glycosylases.
15 DNA sliding is human 8-oxoguanine ((o)G) DNA glycosylase 1 (hOGG1), which repairs mutagenic (o)G lesi
16 recently shown to stimulate 8-oxoguanine DNA glycosylase 1 (OGG1), an enzyme that removes oxidized pu
17 mes, the DNA glycosylases TDG and 8-oxoG DNA glycosylase 1 (OGG1), apurinic/apyrimidinic (AP) endonuc
21 DNA damage repair molecules 8-oxoguanine-DNA-glycosylase-1, nei-endonuclease-VIII-like, X-ray-repair-
26 e 3alpha (TOP3alpha) and NEIL3 (Nei-like DNA glycosylase 3), as well as transcription and RNA regulat
28 We examined the role of the viral uracil DNA glycosylase, a protein conserved among all herpesviruses
29 leobase shape on damage recognition by these glycosylases, a series of four substituted indole nucleo
30 ibosyl moiety of DNA, human alkyladenine DNA glycosylase (AAG) and Escherichia coli 3-methyladenine D
34 ONS-induced DNA damage; the alkyladenine DNA glycosylase (Aag/Mpg) excises several DNA base lesions i
35 NA demethylation mediated by the DEMETER DNA glycosylase accounts for all of the demethylation in the
36 monstrate that Pms2/Mlh1 and multiple uracil glycosylases act jointly, each one with a distinct stran
37 , T/I, and A/I base pairs and a xanthine DNA glycosylase acting on all double-stranded and single-str
38 A/U base pairs, but also a hypoxanthine DNA glycosylase acting on G/I, T/I, and A/I base pairs and a
41 mes compare favorably with their known DNA-N-glycosylase activities: AAG removes both methanol and 1,
43 ugh the female lineage due to widespread DNA glycosylase activity in the male germline, and extensive
47 08) Nevertheless, G.T substrate affinity and glycosylase activity of TDG(82-308) greatly exceeds that
48 dition, NEIL1 but not mNeil3 showed enhanced glycosylase activity on Gh in the telomeric sequence con
49 G) from Escherichia coli is known to exhibit glycosylase activity on three mismatched base pairs, T/U
50 glycosylases for oxidized bases carry both a glycosylase activity that removes the faulty base and an
51 al sensing of 8-oxoguanine and uracil repair glycosylase activity within DNA monolayers on gold by mu
52 IL1 are catalytically inactive for their DNA glycosylase activity, these deficiencies may increase su
55 uantitative measurements of 8-oxoguanine DNA glycosylase, alkyl-adenine DNA glycosylase, MutY DNA gly
56 we observed that Nrf2, p53 and 8-oxoguanine glycosylase alpha dependent antitumor mechanisms were la
57 of intercalation for human alkyladenine DNA glycosylase, an enzyme that initiates repair of alkylati
58 ranslocations in plasmacytomas from uracil N-glycosylase and activation-induced cytidine deaminase-de
59 II) and demonstrated their DNA cleavage, DNA glycosylase and AP lyase activities in vitro at 37 degre
60 anine-containing DNA and stimulated both the glycosylase and apurinic/apyrimidinic lyase activities o
61 es Schiff base formation, and stimulates its glycosylase and apyrimidinic/apurinic lyase enzymatic ac
62 VACV D4 protein serves both as a uracil-DNA glycosylase and as an essential component required for p
63 duct of 5hmC could be excised by thymine DNA glycosylase and MBD4 glycosylases regardless of context.
66 es in opposing DNA strands with selected DNA glycosylases and human apurinic/apyrimidinic endonucleas
67 se excision repair (BER) is initiated by DNA glycosylases and is crucial in repairing RONS-induced DN
68 be operative in related base excision repair glycosylases and provides a critical framework for analy
69 related with active DNA demethylation by DNA glycosylases and repressive targeting by the Polycomb gr
70 of several enzymes [four BER-initiating DNA glycosylases and the downstream processing apurinic/apyr
71 paralleled by a compromised TDG (thymine DNA glycosylase) and TET1 (ten-eleven translocation protein
73 HmdU, may be cleaved from DNA by thymine DNA glycosylase, and subsequent action of base-excision repa
74 tarate-dependent dioxygenases, base excision glycosylases, and sequence-specific transcription factor
80 HD model R6/2 mice indicates that these DNA glycosylases are present in brain areas affected by neur
81 DEMETER family of 5-methylcytosine (5mC) DNA glycosylases are the first genetically characterized DNA
82 thyltransferase) and APNG (alkylpurine-DNA-N-glycosylase) are key enzymes capable of repairing temozo
84 ized bases, initiated by NEIL1 and other DNA glycosylases at the chromatin level remains unexplored.
91 described both vertebrate and microbial DNA glycosylases capable of unhooking highly toxic interstra
95 lts suggest that Fpg, and possibly other DNA glycosylases, convert part of the binding energy into ac
98 Why mammalian cells possess multiple DNA glycosylases (DGs) with overlapping substrate ranges for
99 an N-terminal MBD (MBD4MBD) and a C-terminal glycosylase domain (MBD4GD) separated by a long linker.
100 the enzyme harbors a helix-hairpin-helix DNA glycosylase domain followed by a unique C-terminal domai
102 Here, we report a crystal structure of the glycosylase domain of human MBD4 (residues 427-580) boun
103 s that would be expected to provide the MBD4 glycosylase domain with specificity for acting at CpG si
105 study the [Fe4S4] clusters in the DNA repair glycosylases EndoIII and MutY to evaluate the effects of
106 nds, but one restriction enzyme (restriction glycosylase) excises unmethylated bases from its recogni
107 ctivity on Tg in quadruplex DNA and that the glycosylase exhibited a strong preference for Tg in the
109 cation sites was developed that utilizes DNA glycosylases found in the base excision repair pathway t
112 aled introduction of formamidopyrimidine-DNA glycosylase (Fpg)-sensitive oxidative DNA lesions suppre
113 ned the consequences of compromising the DNA glycosylases (Fpg and MutY) and endonucleases (Smx and S
118 tative PCRs (qPCRs) targeting the uracil DNA glycosylase gene (udg) or the 23S rRNA gene are describe
119 y circuit centered on a 5-methylcytosine DNA glycosylase gene is required for long-term epigenetic fi
120 targeted inactivation of the mouse Smug1 DNA glycosylase gene is sufficient to ablate nearly all hmU-
121 ined with inactivation of the Ung uracil-DNA glycosylase gene leads to a loss of nearly all detectabl
122 Their processing by the OGG1 and MUTYH DNA glycosylases generates closely spaced incisions on oppos
123 substrates for mNeil3 and NEIL1, none of the glycosylases had activity on quadruplex DNA containing 8
130 nce, all three analogs can be cleaved by DNA glycosylases; however, glycosylase activity is blocked i
131 be substrates for base excision repair (BER) glycosylases; however, large Sp-amine adducts would be e
132 ase excision activities of human thymine DNA glycosylase (hTDG) toward duplex DNA substrates harborin
133 to study damage search by human thymine DNA glycosylase (hTDG), which initiates BER of mutagenic and
134 DNA repair enzymes such as human uracil-DNA glycosylase (hUNG) perform the initial step in the base
136 e in sliding and hopping by human uracil DNA glycosylase (hUNG), which is an exemplar that efficientl
137 line that had no detectable human uracil DNA glycosylase (hUNG2) activity, establishing that hUNG2 is
138 he probability that nuclear human uracil DNA glycosylase (hUNG2) excised two uracil lesions spaced 10
139 sic site recognition, the rate of uracil-DNA glycosylase hydrolysis of the N-glycosidic bond, convert
140 ndo III possesses two types of activities: N-glycosylase (hydrolysis of the N-glycosidic bond) and AP
141 ponses, whereas a lack of other Nei-like DNA glycosylases (i.e., NEIL1 and NEIL2) had no significant
142 AG) and Escherichia coli 3-methyladenine DNA glycosylase II (AlkA) bind tightly to their abasic DNA p
144 in (MBD) family, MBD4 serves as a potent DNA glycosylase in DNA mismatch repair specifically targetin
146 acil creation by AID and its removal by UNG2 glycosylase in splenocytes undergoing maturation and in
147 from the DNA backbone by human alkyladenine glycosylase in vitro is similarly affected by nearest-ne
149 ks caused by base excision from ssDNA by DNA glycosylases, including Nei-like (NEIL) 1, would generat
150 can remove hydantoin lesions but none of the glycosylases, including OGG1, are able to remove 8-oxoG
152 ird-generation base editors that fuse uracil glycosylase inhibitor, and that use a Cas9 nickase targe
155 methyltransferases and 5-methylcytosine DNA glycosylases interact to maintain epigenetic homeostasis
156 uclease VIII-like protein 1 (NEIL1) is a DNA glycosylase involved in initiating the base excision rep
157 bacterial MutY (MUTYH in humans) adenine DNA glycosylase is able to initiate the repair of A:oxoG by
159 nced by either UNG1/2, SMUG1, or thymine-DNA glycosylase knockdown, strongly suggesting that there ar
162 fications, and thus, the mechanisms by which glycosylases locate DNA damage are of particular interes
164 1 (ROS1) is a multi-domain bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5mC)
166 eukaryotic and prokaryotic bifunctional DNA glycosylases/lyases (NEIL1, Nei, Fpg, Nth, and NTH1) and
168 ng with the base excision repair pathway DNA glycosylase MAG1 renders the tpa1Deltamag1Delta double m
169 By fusing the yeast 3-methyladenine DNA glycosylase MAG1 to a tetR DNA-binding domain, we are ab
172 we present the first, to our knowledge, DNA glycosylase mechanism that does not require base flippin
174 o inefficient turnover of N-methylpurine-DNA glycosylase (MPG), which initiates BER of epsilonA.
175 Mitochondria-targeted human 8-oxoguanine DNA glycosylase (mt-hOgg1) and aconitase-2 (Aco-2) each redu
178 FCL) motif in the structurally unrelated BER glycosylases MutY and Endonuclease III and therefore ref
179 xoguanine DNA glycosylase, alkyl-adenine DNA glycosylase, MutY DNA glycosylase, uracil DNA glycosylas
180 emonstrated that the bacterial and human DNA glycosylases Nei and NEIL1 excise unhooked psoralen-deri
183 e DNA base excision repair (BER) enzyme, DNA glycosylase NEIL1, efficiently recognizes and excises th
184 se excision activities of five mammalian DNA glycosylases (NEIL1, NEIL2, mNeil3, NTH1, and OGG1) on t
185 observed that the endonuclease VIII-like DNA glycosylase, NEIL1, accumulates at sites of oxidative DN
187 nstrate that the bi-functional meningococcal glycosylases Nth and MutM can perform strand incisions a
188 esions in the human genome, initiated by DNA glycosylases, occurs via the base excision repair pathwa
191 ating the DNA repair enzyme 8-oxoguanine DNA glycosylase (OGG1) in the PyMT transgenic mouse model of
194 The major DNA glycosylase, 8-oxoguanine glycosylase (OGG1), is responsible for removing the most
199 gar-phosphate backbone and the action of DNA glycosylases on deaminated, oxidized, and alkylated base
206 SMUG1 or thymine-DNA glycosylase uracil-DNA glycosylases, proving that it is base excision by UNG1/2
207 ntribute to removal of uracils by uracil DNA glycosylase regardless of the translational or rotationa
212 n flowering or DNA repair, including the DNA glycosylase ROS1, which facilitates DNA demethylation.
213 tures have captured for the first time a DNA glycosylase scanning the genome for a damaged base in th
215 n repair, a pathway that is catalyzed by DNA glycosylases such as 8-oxoguanine DNA glycosylase (OGG1)
217 5fC and 5caC are excised by mammalian DNA glycosylase TDG, implicating 5mC oxidation in DNA demeth
218 nucleotide and purified BER enzymes, the DNA glycosylases TDG and 8-oxoG DNA glycosylase 1 (OGG1), ap
219 generate unmodified cytosines by thymine-DNA glycosylase (TDG) and base excision repair (BER) pathway
223 C and 5caC subject to removal by thymine DNA glycosylase (TDG) in conjunction with base excision repa
224 ir, and this step is followed by thymine DNA glycosylase (TDG) initiated base excision repair (BER).
230 ET) enzymes (TET1/TET2/TET3) and thymine DNA glycosylase (TDG) play crucial roles in early embryonic
233 (caC), excision of fC or caC by thymine DNA glycosylase (TDG), and restoration of cytosine via follo
235 recognized by the monofunctional thymine DNA glycosylase (Tdg), which cleaves the glycosidic bond of
242 as a function of (i) the lesion type and DNA glycosylase tested, (ii) local sequence context and the
245 iroi AlkZ (previously Orf1), a bacterial DNA glycosylase that protects its host by excising ICLs deri
246 Endonuclease VIII-like 1 (NEIL1) is a DNA glycosylase that recognizes a broad range of oxidative l
249 ke protein 1], one of the five mammalian DNA glycosylases that excise oxidized DNA base lesions in th
251 nophosphate, or that lack MutM and MutY, DNA glycosylases that process base pairs involving 8-oxo-dGT
252 ion repair (BER), a process initiated by DNA glycosylases that recognize and remove damaged DNA bases
253 otion of single molecules of three bacterial glycosylases that recognize oxidized bases, Fpg, Nei, an
255 s of this or any type are not excised by DNA glycosylases that use a traditional base-flipping mechan
257 ivo-targeted mutagenesis in yeast, targeting glycosylases to embedded arrays for mutagenesis (TaGTEAM
259 CING 1 (ROS1) family of 5-methylcytosine DNA glycosylases to protect these genes from silencing.
261 potentially general concept of sculpting of glycosylases to their targets, allowing them to exploit
262 e interest surrounds the question of how DNA glycosylases translocate efficiently along DNA while mai
263 ion in plants is mediated by a family of DNA glycosylases typified by Arabidopsis ROS1 (repressor of
269 iosensor is able to detect both uracil DNA N-glycosylase (UNG) and AP-endonuclease 1 (APE1) within fe
270 tidine deaminase are processed by uracil-DNA glycosylase (UNG) and mismatch repair (MMR) pathways to
271 zygotes (AID+/-), and patients with uracil N-glycosylase (UNG) deficiency, which impairs CSR but not
273 repair (BER), either initiated by uracil-DNA glycosylase (UNG) or by single-strand selective monofunc
274 entary pathways, initiated by the uracil-DNA glycosylase (UNG) or the mismatch repair factor MSH2/MSH
279 anine mismatches are processed by uracil DNA glycosylase (UNG)-mediated base-excision repair and MSH2
283 with base excision repair enzyme uracil DNA glycosylase (UNG2) and crossover junction endonuclease M
288 but not by knockdown of SMUG1 or thymine-DNA glycosylase uracil-DNA glycosylases, proving that it is
289 ase, alkyl-adenine DNA glycosylase, MutY DNA glycosylase, uracil DNA glycosylase, and APE1 activity.
290 ndings support a general mechanism where DNA glycosylases use highly dynamic multidimensional diffusi
291 tructures of Endo III, we conclude that this glycosylase uses a multistep mechanism of damage recogni
295 Repair of A:oxoG is initiated by adenine DNA glycosylase, which catalyzes hydrolytic cleavage of the
296 at cells defective in the N-methylpurine DNA glycosylase, which fail to remove N-methylpurines from D
297 ent DNA repair pathways, including NEIL1 DNA glycosylase, which initiates base excision repair (BER)
298 arising from DNA damage are mitigated by DNA glycosylases, which initiate the base excision repair pa
299 endonuclease III (Endo III or Nth) is a DNA glycosylase with a broad substrate specificity for oxidi
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