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1 pin domain, a helical hairpin, and bipartite helix-turn-helix motif.
2 suspected to be a DNA-binding protein, has a helix-turn-helix motif.
3 lysozyme (residues T115-K135), located in a helix-turn-helix motif.
4 ganized into a nascent helix-turn-helix-turn-helix-turn-helix motif.
5 yb proteins centering on the possession of a helix-turn-helix motif.
6 o known proteins but does contain a putative helix-turn-helix motif.
7 n which is responsible for DNA binding via a helix-turn-helix motif.
8 esence of a conserved C-terminal DNA-binding helix-turn-helix motif.
9 pecific contacts to the major groove via its helix-turn-helix motif.
10 a three-helix bundle containing a canonical helix-turn-helix motif.
11 d antiparallel beta-barrel and an N-terminal helix-turn-helix motif.
12 the DNA in the classical fashion of a winged helix-turn-helix motif.
13 invariant cysteine residues and a conserved helix-turn-helix motif.
14 ing, form the second helix of an unpredicted helix-turn-helix motif.
15 the major groove contact site as a modified helix-turn-helix motif.
16 confirming that DNA binding is mediated by a helix-turn-helix motif.
17 boxyl-terminal domain binds DNA via a winged helix-turn-helix motif.
18 s found previously for a naturally occurring helix-turn-helix motif.
19 ly with a beta-barrel body capped by a small helix-turn-helix motif.
20 hosphate repressor which are not part of the helix-turn-helix motif.
21 meodomain protein, which binds DNA through a helix-turn-helix motif.
22 beta-sandwich and a potentially DNA-binding helix- turn-helix motif.
23 er structure in current databases, including helix-turn-helix motifs.
24 Lrp, including complete conservation of the helix-turn-helix motifs.
25 N-terminal DNA-binding domain containing two helix-turn-helix motifs.
26 rientation of the two DNA-interacting winged helix-turn-helix motifs.
27 by a complement of DNA contacts made by two helix-turn-helix motifs.
28 tructural features; embedded zinc ribbon and helix-turn-helix motifs.
29 fies an N-terminal cytoplasmic domain with a helix-turn-helix motif, a transmembrane sequence, and a
31 putative recognition helix of the predicted helix-turn-helix motif and a basic region near the C ter
33 f the dtxR gene that encodes the DNA-binding helix-turn-helix motif and metal-binding site 1 within d
36 ra are at residues 78-81, at the turn of the helix-turn-helix motif and the tip of the recognition he
38 ers of this family, including the C-terminal helix-turn-helix motif and the well-conserved RpoN box.
39 A might use a slightly different part of the helix-turn-helix motif and there appears to be some asso
40 sults for p16; (b) two residues at the first helix-turn-helix motif and two at the third are importan
42 ed conservation of basic residues within the helix-turn-helix motif and within the beta hairpin loop,
44 strongly to DNA through the zinc finger and helix-turn-helix motifs and that DNA binding and catalys
45 minal DNA-binding domain contains the winged helix-turn-helix motif, and the C-terminal presumed regu
46 that connects the helices of a non-canonical helix-turn-helix motif, and through a concomitant struct
47 groove binding wings, an inward movement of helix-turn-helix motifs, and a downward relocation of pl
48 in of AdpA (AdpA-DBD), which consists of two helix-turn-helix motifs, and a target duplex DNA contain
50 B contains at least three DNA binding winged-helix-turn-helix motifs, and mutations within any of the
51 the DNA free state the backbone atoms of the helix-turn-helix motif are generally immobilized whereas
52 the helical N- and C-termini of hCRF form a helix-turn-helix motif around a turn centered at residue
53 recently, we suggested the possibility of a helix-turn-helix motif around a turn encompassing residu
54 e three-helix bundle protein form the native helix-turn-helix motif as an on-pathway intermediate wit
55 FP and the (13)C chemical shifts supported a helix-turn-helix motif at both pH 5.0 and 7.4 with an al
56 ed amino acid sequence of SusR protein had a helix-turn-helix motif at its carboxy-terminal end, and
57 The ARID (A-T Rich Interaction Domain) is a helix-turn-helix motif-based DNA-binding domain, conserv
59 e DNA-binding domain of SimR has a classical helix-turn-helix motif, but it also carries an arginine-
62 alpha helices, of which the middle 2 form a helix-turn-helix motif closely related to that of Drosop
63 al region, the protein sequence contains the helix-turn-helix motif common to many DNA binding protei
64 bundle containing a pseudo 2-fold axis and a helix-turn-helix motif commonly found in DNA-binding pro
67 NrpR contained a putative N-terminal winged helix-turn-helix motif followed by two mutually homologo
70 irF, it may use both of its carboxy-terminal helix-turn-helix motifs for DNA interaction, and may als
71 logs with 98% identity overall and identical helix-turn-helix motifs, for which a previous study neve
73 r exchangeable apolipoproteins comprises the helix-turn-helix motif formed of four 11-mer sequence re
74 for the interaction and that Asp(18) of the helix-turn-helix motif forms a component of the interact
76 ratricopeptide repeat (TPR), a 34 amino acid helix-turn-helix motif found in tandem arrays in many na
78 four-helix bundles formed by the pairing of helix-turn-helix motifs from two subunits; by means of a
79 ognition: anti-parallel beta strands (MetR), helix-turn-helix motif + hinge helices (PurR), and zinc
81 tilt) from central helix C, positioning the helix-turn-helix motif in an unfavorable position for th
82 okaryotic DNA-binding proteins with a single helix-turn-helix motif in its ability to bind DNA monome
83 The -35 promoter region is recognized by a helix-turn-helix motif in region 4, while the -10 region
84 dues throughout the recognition helix of the helix-turn-helix motif in region 4.2, in contrast to DNA
85 ed a common orientation of the proposed ECL2 helix-turn-helix motif in the binding cavity of cCPE: re
86 ospecific interactions between the BRE and a helix-turn-helix motif in the C-terminal cyclin repeat o
88 es 28-35, which form the second helix of the helix-turn-helix motif in the crystal structure, do not
89 This peptide corresponds to the end of a helix-turn-helix motif in the IN(1-55) NMR structure and
90 g method, we found that ATR interacts with a helix-turn-helix motif in the minimal DNA-binding domain
91 es a 137-amino acid protein with a potential helix-turn-helix motif in the N-terminal domain, charact
93 s of mthCdc6-1 mutants demonstrates that the helix-turn-helix motif in the winged-helix domain mediat
94 w minor grooves using the separation between helix-turn-helix motifs in the Fis dimer as a ruler.
95 in the spatial relationship between the two helix-turn-helix motifs in the Fis dimer upon DNA bindin
96 and characterization generated a 24-residue helix-turn-helix motif, including a 13-residue insertion
97 The BtgA protein was predicted to contain a helix-turn-helix motif, indicating possible DNA binding
98 he complex, the alpha/beta-type SASP adopt a helix-turn-helix motif, interact with DNA through minor
99 d PerA protein that contains the DNA-binding helix-turn-helix motif is 100% conserved in all strains
104 activator at a domain within or close to the helix-turn-helix motif located at the C terminus of the
106 we obtained direct evidence that the central helix-turn-helix motif of EsxA inserted into the membran
108 tein interaction; the protruding hydrophobic helix-turn-helix motif of one subunit fits into a groove
109 al half-site sequence for recognition by one helix-turn-helix motif of one TrpR dimer is 3'CNTGA5'5'G
110 ns with the invariant Arg383 in the putative helix-turn-helix motif of the DNA-binding domain substit
111 g domains has verified the assignment of the helix-turn-helix motif of the transcriptional regulators
113 that the ATR-XPA interaction mediated by the helix-turn-helix motif of XPA plays an important role in
115 of alpha-helices in a series of right-handed helix-turn-helix motifs organized into a long rod of len
116 ternary structural change that moves the two helix-turn-helix motifs out of register with successive
117 hat for DNA binding, ComA uses the conserved helix-turn-helix motif present in other NarL family memb
118 and the unprecedented close spacing between helix-turn-helix motifs present in the apodimer is accom
119 domain containing two functionally separable helix-turn-helix motifs, resembling the paired domain of
120 ve examined the nature of the highly charged helix-turn-helix motif (S3b and S4) to address how a hig
121 s a unique fold in which three tandem winged helix-turn-helix motifs scaffold a positively charged co
123 whose amino acid sequence contains a winged helix-turn-helix motif similar to the DNA-binding domain
129 ignificant helical secondary structure via a helix-turn-helix motif that inserts the central hydropho
131 r of the growing IRF family, revealing a new helix-turn-helix motif that latches onto DNA through thr
132 tratricopeptide repeat (TPR) is a 34-residue helix-turn-helix motif that occurs as three or more tand
133 o acid region which potentially folds into a helix-turn-helix motif that specifically binds to the Ca
134 otein is composed of four ankyrin repeats (a helix-turn-helix motif) that stack linearly as two four-
135 o the binding cavity, which is formed by the helix-turn-helix motif, the betaC-betaD turn and the bet
136 conformational fluctuations that adjust the helix-turn-helix motif to open or close the top of the b
137 e phage excisionases may use variations of a helix-turn-helix motif to recognize specific DNA sequenc
138 anges needed to allow the DNA-binding winged helix-turn-helix motifs to interact with the consecutive
139 gions of the two subunits organized with two helix-turn-helix motifs; two globular flaps extending in
140 gntR product is 331 amino acids long, with a helix-turn-helix motif typical of a regulatory protein.
141 n and around the PobR region that contains a helix-turn-helix motif, whereas mutations causing defect
142 a dinucleotide folds but includes an unusual helix-turn-helix motif which extends from the central be
143 ins two regions resembling the characterized helix-turn-helix motif which is involved in DNA recognit
144 and another lysine, from the 'turn' of the 'helix-turn-helix' motif, which binds downstream and on t
147 main caused by a 6-9 degrees rotation of the helix-turn-helix motif with respect to the rest of the m
148 R, encodes a 22-kDa protein which contains a helix-turn-helix motif with sequence identity to DNA bin
149 phaalphabeta subunits are characterized by a helix-turn-helix motif with sequence signature GxxG at t
150 he long, flexible loop between them form the helix-turn-helix motif, with the third helix being the r
152 y binding to voltage-sensor paddles, crucial helix-turn-helix motifs within the voltage-sensing domai
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