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   3 eloped an in vivo single DSB system for both heterochromatic and euchromatic loci in Drosophila melan
  
     5  contrast to theories that Y chromosomes are heterochromatic and gene poor, the mouse MSY is 99.9% eu
  
     7 euchromatic and intronic regions compared to heterochromatic and intergenic regions, respectively, an
     8 ound near centromeres, which are known to be heterochromatic and methylated, or the remaining majorit
     9  D. melanogaster revealed previously unknown heterochromatic and telomeric transition sequences, and 
    10 somes are gene-poor, repeat-rich and largely heterochromatic and therefore represent a difficult targ
  
  
    13 Conversely, repair in regions classified as "heterochromatic" and "repressed" was relatively low at e
    14 egions of the genome (genic, intergenic, and heterochromatic) and at different distances ( approximat
    15  the Drosophila Y chromosome is degenerated, heterochromatic, and contains few genes, increasing evid
    16 find that these retrotransposon arrays, both heterochromatic, are maintained quite differently, resul
  
  
  
    20 ans, including the formation of subtelomeric heterochromatic caps, the hyperexpansion of segmental du
  
    22  are characterized by a lack or reduction of heterochromatic CHH methylation and enrichment of CHH me
    23  (ORs) genes requires the formation of large heterochromatic chromatin domains that sequester the OR 
    24 ditionally, PELP1 positively correlates with heterochromatic chromatin marks and negatively correlate
    25 n the euchromatic chromosome arms exhibits a heterochromatic chromatin signature, which differs in si
  
    27 he Drosophila Y chromosome is a degenerated, heterochromatic chromosome with few functional genes.   
  
  
  
    31 We show that Rhino binds specifically to the heterochromatic clusters that produce piRNA precursors, 
    32 v) increase in the number of pericentromeric heterochromatic clusters; and (v) increase in the freque
    33 ns that switched from the euchromatic to the heterochromatic compartment during neutrophil differenti
    34 tion involved genomic regions located in the heterochromatic compartment in both progenitors and neut
    35  for the concept that induced changes to the heterochromatic component of the genome are coincident w
    36 tem, identifying certain endogenous genes in heterochromatic contexts as privileged while foreign DNA
    37  double strand breaks (DSBs), which arise in heterochromatic DNA (HC-DSBs) following exposure to ioni
  
    39 , and show an abundance of genetically inert heterochromatic DNA but contain few functional genes.   
  
  
  
    43 orylation of S824 is necessary for repair of heterochromatic DNA lesions and similar to cells express
    44 show that lack of histone H1, which elevates heterochromatic DNA methylation in somatic tissues, does
    45 X RELATED PROTEIN 5 and 6 (ATXR5/6) regulate heterochromatic DNA replication and genome stability.   
    46 affold for the anchoring of highly condensed heterochromatic DNA to the nuclear envelope, thereby est
  
  
  
  
  
  
  
    54     Two recent papers in Nature propose that heterochromatic domains are organized into phase-separat
  
    56 n efficiency of origins in late-replicating, heterochromatic domains is only 25% lower than in early-
    57 itioning of chromosomes into euchromatic and heterochromatic domains requires mechanisms that specify
  
    59 in firing time, including that of origins in heterochromatic domains, was established in late G1 phas
    60 ns between both constitutive and facultative heterochromatic domains, with the strongest interactions
  
  
  
  
  
  
    67 A enzymatic activity is required to relocate heterochromatic double-strand breaks outside the domain,
  
  
    70 hful homologous recombination (HR) repair of heterochromatic DSBs relies on the relocalization of DSB
    71 hought to be the main pathway used to repair heterochromatic DSBs, direct tests of this hypothesis ar
  
    73 orylation (pKAP-1) and CHD3.1 dispersal from heterochromatic DSBs; however, how heterochromatin compa
  
  
    76 are strongly correlated with euchromatic and heterochromatic epigenetic histone modifications, respec
  
  
  
  
    81 e performed whole-genome analyses of several heterochromatic features: dimethylation of lysine 9 and 
  
    83  at specific loci around the fovea using the heterochromatic flicker photometry (HFP) and the two-wav
    84 -wavelength fundus autofluorescence [AF] and heterochromatic flicker photometry [HFP]), and serum con
    85 POD) measured noninvasively using customized heterochromatic flicker photometry and blood samples gen
  
  
  
  
  
  
    92 l layers characterizes senescence-associated heterochromatic foci (SAHF) formation in human fibroblas
  
    94 nce of Msc1, the in vivo mobility of Swi6 at heterochromatic foci is compromised, and centromere hete
    95 ne H2A, is a marker of senescence-associated heterochromatic foci that synergizes with DNA methylatio
    96 s, the repaired MeCP2 protein is enriched in heterochromatic foci, reflecting restoration of normal M
  
  
  
  
  
  
  
  
   105 ntly different roles, ranging from canonical heterochromatic function at pericentric and telomeric re
   106 nd its binding partner E2FA are recruited to heterochromatic gammaH2AX-labelled DNA damage foci in an
  
  
   109 e delete this trigger, dramatically altering heterochromatic gene silencing and chromatin architectur
   110 ine a minimal set of components that mediate heterochromatic gene silencing and demonstrate distinct 
   111 ons outside of DNA replication, including in heterochromatic gene silencing and telomere maintenance.
   112 he repetitive rDNA arrays are thought to use heterochromatic gene silencing as a mechanism for metabo
   113 is required for RITS spreading and efficient heterochromatic gene silencing at centromeric repeat reg
  
  
  
   117 y partially dependent on known components of heterochromatic gene silencing, implying that a distinct
  
   119 entric heterochromatin and the activation of heterochromatic genes that depend on their pericentric l
  
   121  neutrophil genomes were highly enriched for heterochromatic genomic interactions across vast genomic
   122 Ms by analyzing histone H3 purified from the heterochromatic germline micronucleus of the model organ
  
  
  
  
   127 ectopic alphoid DNA integration site removed heterochromatic H3K9me3 modification and was sufficient 
  
   129  cocaine dramatically and dynamically alters heterochromatic histone H3 lysine 9 trimethylation (H3K9
   130 of histone H3 lysine 9 (H3K9) methylation, a heterochromatic histone mark, from immediate early and l
  
  
   133 ation H3K9ac and a corresponding increase in heterochromatic histone modification H3K9me3 at the LMP2
  
  
   136  and mitosis, the contribution and extent of heterochromatic histone posttranslational modifications 
  
   138  E-cadherin gene becomes hypermethylated and heterochromatic, kinase inhibitors can restore E-cadheri
   139 drive system that transforms typically inert heterochromatic knobs into centromere-like domains (neoc
   140 lncRNA transcription in both euchromatic and heterochromatic lncRNA-based gene silencing processes.  
  
   142 is recruited by the ATF/CREB homolog Atf1 to heterochromatic loci and promoters of stress-response ge
   143 e that Spt6 is required for silencing of all heterochromatic loci and that an spt6 mutant has an unus
   144 We also show that several well-characterized heterochromatic loci are de-repressed in Mediator mutant
  
  
   147 osons for silencing, but not the specialized heterochromatic loci that produce piRNA precursors.     
   148 that Fft3 suppresses turnover of histones at heterochromatic loci to facilitate epigenetic transmissi
   149 s Pol IV and Pol V to different locations at heterochromatic loci to promote siRNA biogenesis and siR
   150 sed copies of mating-type information at the heterochromatic loci, HMLalpha and HMRa, which are locat
  
  
  
  
   155 ple model for the mitotic inheritance of the heterochromatic mark H3K27me1 and the protection of H3.3
  
  
   158 ions and gene bodies marked by a facultative heterochromatic mark, which could explain the observed b
  
   160 ought to follow loss of Xist RNA coating and heterochromatic markers of inactivation, such as methyla
   161 es in primary CD4(+) T cells are enriched in heterochromatic markers, including high levels of CBF-1,
   162 omatin specifically and acts in synergy with heterochromatic marks H3K9me2 and DNA methylation to mai
   163 ) genomes are associated with the repressive heterochromatic marks H3K9me2/me3 and H3K27me3 during la
  
  
  
  
   168  mutant derepressed for recombination in the heterochromatic mating-type region during meiosis and se
   169 own as Clr7 and Raf2), Rik1 and Lid2-promote heterochromatic methylation of histone H3 at lysine 9 (H
   170 creased repressive chromatin marks, and this heterochromatic milieu is lost in SIRT6-deficient cells.
   171 ent inactive X chromosome (Xi) enriched with heterochromatic modifications and XIST/Xist RNA, which e
  
   173 vation led to the unrestrained expression of heterochromatic noncoding RNAs (ncRNAs) that in turn tri
   174 tion complex on the neo-X and those becoming heterochromatic on the neo-Y show little overlap, possib
   175 mark may be important for maintaining proper heterochromatic organization and, possibly, chromosome f
   176  the number of crossovers between markers in heterochromatic pericentric regions that underwent demet
   177 an spt6 mutant has an unusual combination of heterochromatic phenotypes compared to previously studie
   178 matic portion of the genome and 21 Mb in the heterochromatic portion, using a whole-genome shotgun as
   179 usual in that it exhibits an amalgamation of heterochromatic properties (e.g., dense packaging, late 
  
   181 re, we gained novel functional insight about heterochromatic PTMs by analyzing histone H3 purified fr
  
   183 ce-specifically in vitro, and localizes to a heterochromatic region in the COOLAIR promoter in vivo. 
   184  (gpt), differentially near, and far from, a heterochromatic region of the genome, in two cell lines,
  
  
   187 fluorescent staining pattern, with unstained heterochromatic regions and a banded distribution along 
   188 brid incompatibilities in Drosophila involve heterochromatic regions and factors that interact with t
   189 und that transcripts of many genes native to heterochromatic regions and TEs increased with age in fl
  
  
   192 and SHREC facilitate nucleosome occupancy at heterochromatic regions but TFIIIC transcription factor 
  
   194 genome assembly correspond to multi-megabase heterochromatic regions composed primarily of two relate
   195 range interactions such as those among small heterochromatic regions embedded in euchromatic arms.   
   196 ed chromosome arms while it was inhibited in heterochromatic regions encompassing pericentromeric DNA
   197 aled that sequences located within different heterochromatic regions have distinct properties, such a
   198 enomic landscape of histone modifications in heterochromatic regions have revealed histone H3 lysine 
   199 lex incorporates the histone variant H3.3 at heterochromatic regions in a replication-independent man
  
  
  
  
  
  
   206 High-resolution nucleosome occupancy maps of heterochromatic regions of wild-type and silencing-defec
   207 slow kinetics, including those localizing to heterochromatic regions or harboring additional lesions 
   208 ion is lost and is only restored in specific heterochromatic regions that have maintained competence 
   209 pectedly finding the later-replicating, more heterochromatic regions to be less methylated than early
  
   211 f chromatin accessibility in euchromatic and heterochromatic regions under extended darkness in Arabi
   212 he transcriptionally inert, late-replicating heterochromatic regions, including the constitutive hete
   213 tromeric regions, even including some of the heterochromatic regions, which are not present in gold s
  
  
  
  
  
  
  
  
  
  
   224 rain region, suggesting a potential role for heterochromatic regulation in the long-term actions of c
  
  
   227  concert with a Clr6 HDAC complex to silence heterochromatic repeats, and it suppresses antisense tra
  
   229  significant differences in the stability of heterochromatic repression between various environmental
   230 pression in human myeloid progenitors causes heterochromatic repression of NFI-A gene and channels gr
  
   232 netic assay reveals that transient losses of heterochromatic repression, a heritable form of gene sil
   233 show sporadic waves of silencing loss in the heterochromatic ribosomal DNA during the early phases of
   234 and Keller et al. show distinct outcomes for heterochromatic RNAs that bind different chromodomain pr
   235 tion in differentiated cells, where it binds heterochromatic satellite repeats and chromocenters.    
   236 lication-where replication of constitutively heterochromatic satellite sequences is delayed-extends S
   237 evance, including the preferred locations of heterochromatic satellites of different chromosomes, and
  
   239  adults, suggesting that desilencing of many heterochromatic segments of the genome contributes to st
  
   241 to position unmapped Drosophila melanogaster heterochromatic sequence to specific chromosomal regions
  
  
  
   245 ork confirms that this important but elusive heterochromatic sex chromosome is evolving extremely rap
  
  
   248 ained both by transposons to evade long-term heterochromatic silencing and by their hosts for genome 
   249 mutant demonstrates that Mcm10 has a role in heterochromatic silencing and chromosome condensation, w
   250 , intergenic transcriptional enhancers evade heterochromatic silencing and converge into interchromos
   251 TRX, are required for H3.3 incorporation and heterochromatic silencing at telomeres, pericentromeres,
  
   253 not required for chromosome condensation and heterochromatic silencing but is important for DNA repli
   254  that Spt6 is required for multiple steps in heterochromatic silencing by controlling chromatin, tran
   255 iquitinase (DUB) Ubp10 is thought to promote heterochromatic silencing by maintaining low H2B-Ub at s
  
   257  a challenge to SIR complex-mediated de novo heterochromatic silencing due to the presence of antagon
   258  its binding partner, Iws1, are required for heterochromatic silencing in Schizosaccharomyces pombe. 
  
  
  
   262 of Dos1 identifies key residues required for heterochromatic silencing, consistent with Dos1's role a
   263  Surprisingly, even though qrf is needed for heterochromatic silencing, induction of qrf initially pr
  
  
  
  
  
  
  
  
  
  
   274  However, non-templated nucleotides in plant heterochromatic siRNAs have not been deeply studied, esp
  
  
   277 LH1, leading to recruitment of the latter to heterochromatic sites that are coincident with DNMT1 loc
   278 leaching measurements, which showed that, at heterochromatic sites, wild-type HELLS is very dynamic, 
   279 , RDR2 and Pol IV, components of the typical heterochromatic small interfering RNA (hc-siRNA) pathway
   280 tional silencing (RITS) complex, composed of heterochromatic small interfering RNAs (siRNAs), the siR
   281 ream of Su(var)3-9 and H3K9 dimethylation in heterochromatic spreading and gene silencing that is nor
   282  that the majority of the genome exists in a heterochromatic state defined by inaccessible chromatin 
  
  
   285 NA pathway components are abundant, with the heterochromatic state subsequently propagated by chromat
   286 ng latency may act to promote an appropriate heterochromatic state that represses lytic genes but is 
   287  virus genomes are to some degree found in a heterochromatic state, and this contributes to reduced g
   288 gh level of DNA polymorphisms and from their heterochromatic state, notably their dense DNA methylati
   289 er of repeat copies can nucleate a transient heterochromatic state, which, on longer repeat arrays, m
  
   291 t function of H3.3 is to support chromosomal heterochromatic structures, thus maintaining genome inte
  
  
  
  
  
  
   298 a sterilizing factor by associating with the heterochromatic Y chromosome of D. simulans, whereas D. 
   299 and females, which serves to accommodate the heterochromatic Y chromosome present in the male nucleus
  
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