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1 of the complementary strand, producing a new heteroduplex.
2 ve site is expanded to accommodate a growing heteroduplex.
3 st chromosome to form a physical and genetic heteroduplex.
4 sion to the discontinuous strand of a nicked heteroduplex.
5 nerating increasing or decreasing lengths of heteroduplex.
6 cal geometry into the DNA/RNA portion of the heteroduplex.
7 ge of complementary base pairs to form a new heteroduplex.
8 ch with its own rules for mismatch repair of heteroduplexes.
9 RNA duplexes but not DNA duplexes or RNA-DNA heteroduplexes.
10 rna22 identifies most of the currently known heteroduplexes.
11 croRNA binding sites and their corresponding heteroduplexes.
12 ha, which efficiently corrects both types of heteroduplexes.
13 epleted HeLa extract in repair of mismatched heteroduplexes.
14 ctly on the surface concentration of DNA-RNA heteroduplexes.
15 mediate mutants that carry (CA)(13).(GT)(12) heteroduplexes.
16 , intramolecular stem-loops into more stable heteroduplexes.
17 tions happen and the specifics of the formed heteroduplexes.
18 omplementary cytosine-rich sequences to form heteroduplexes.
19 from Ago2 peaks and prediction of miRNA::RNA heteroduplexes.
20 g activity when interacting with nucleosomal heteroduplexes.
21 tion of loaded beta clamp on either 3' or 5' heteroduplexes.
22 he mismatch and a d(GATC) site in a circular heteroduplex abolishes MutH activation, whereas a double
23 sed, the mismatch insensitive binding in the heteroduplex allows short mismatched regions to be incor
25 by single-strand conformational polymorphism-heteroduplex analysis (SSCP-HA) and by direct sequencing
27 ded to each unknown before PCR, quantitative heteroduplex analysis can differentiate heterozygous, ho
29 mperature-gradient capillary electrophoresis heteroduplex analysis of PCR amplicons of genes and ESTs
31 givalis strain diversity, we previously used heteroduplex analysis of the ribosomal operon intergenic
32 formed on 7 by PCR of each exon, followed by heteroduplex analysis using denaturing high-performance
33 this study was to apply temperature-mediated heteroduplex analysis using denaturing high-performance
35 onto the RNA array to form a surface RNA-DNA heteroduplex and (ii) the hydrolysis of the RNA microarr
36 yribonucleotide at the catalytic site of the heteroduplex and consisted of southern, northern, and ea
40 effect not only on the melting point of the heteroduplex and the homoduplex but also on the hybridiz
41 e show that a more detailed model, involving heteroduplex and transient-duplex formation, leads to si
42 h RNase H required the presence of a surface heteroduplex and, upon completion, regenerated the origi
45 ly in cleaving non-specifically at bulges in heteroduplexes, and single-base mismatches are the least
46 EDC and imidazole, of the hybridized PNA/DNA heteroduplexes, and then they were exploited as the elec
47 fic RNA-DNA antibodies recognizing miRNA-DNA heteroduplexes, antipoly(A)-poly(dT) and anti-S9.6, were
49 or human and mouse miRNAs revealed that many heteroduplexes are "non-canonical" i.e. their seed regio
51 In the presence of target miRNA, DNA-RNA heteroduplexes are formed and become substrate for the e
55 in the genital tract and blood, we performed heteroduplex assays on amplified env products from cell-
56 he native strand in a native:phosphoramidate heteroduplex at a rate comparable to that observed with
58 ctly purifies the single-stranded regions of heteroduplexes between alternative splices formed in the
61 nd at saturating protein concentrations, the heteroduplex-bound mass observed with MutS800 is only ha
64 required for genome packaging, disrupts the heteroduplex by binding tightly to U5 (K(d) = 122 +/- 10
65 Incision of a nicked mismatch-containing DNA heteroduplex by this four-protein system is strongly bia
66 es were introduced to the hybridized PNA/DNA heteroduplexes by employing phosphate-zirconium-carboxyl
67 preferential processing of base-base and ID heteroduplexes by MutSalpha and MutSbeta is determined b
68 duplexes and support ribonuclease H mediated heteroduplex cleavage, all with negligible non-specific
69 ltered enzymatic activity toward immobilized heteroduplexes compared to substrates free in solution.
70 drolysis of nucleotide cofactors by the MutS-heteroduplex complex are required for downstream MMR act
73 for a C3'-endo conformation, and stabilizes heteroduplexes composed of modified DNA and complementar
74 from D344R, the sequence of which revealed a heteroduplex consistent with Int(Tn916)-mediated excisio
75 ence intensity of cells transfected with the heteroduplex construct divided by that of cells transfec
77 Here, we showed that MutS bound to a 30-bp heteroduplex containing an unpaired T with a binding aff
78 ocess DNA loop structures, a set of circular heteroduplexes containing a 30-nucleotide loop were cons
81 ased and artifacts are reduced by generating heteroduplexes containing only one of the two possible m
82 pecific recognition and binding of MutS to a heteroduplex, containing either a mismatch or an inserti
83 melting curve separation is proportional to heteroduplex content difference and that the addition of
85 tion using a fluorescein-tagged 20-base pair heteroduplex demonstrated that native MutS forms a tetra
86 ection system to assay cleavage of amplified heteroduplexes derived from a variety of induced mutatio
87 of MutH endonuclease on a 6.4-kilobase pair heteroduplex, displaying only 1 to 2% of the activity of
88 the mechanism of gene targeting, we examined heteroduplex DNA (hDNA) formation during targeting of tw
90 These models differ in the arrangement of heteroduplex DNA (hDNA) in recombination intermediates.
92 e function of Rad54 is removal of Rad51 from heteroduplex DNA (hDNA) to allow HR-associated DNA synth
93 tiating DSB, with a short (<300 bp) tract of heteroduplex DNA (hDNA) to one side and hDNA on the othe
97 rkers spanning the DSB should be included in heteroduplex DNA and be detectable as non-Mendelian segr
98 e 3' invading strand to be incorporated into heteroduplex DNA and to be extended by DNA polymerases.
100 ous conversion tracts, as well as persistent heteroduplex DNA at crossover sites in mature spermatozo
102 ion between divergent sequences by rejecting heteroduplex DNA containing excessive nucleotide mismatc
103 hought to promote dissociation of RAD51 from heteroduplex DNA following strand exchange during homolo
104 e tract length and directionality, including heteroduplex DNA formation, transcription, replication a
108 (OsPERT) was primarily developed to prepare heteroduplex DNA from alkali-denatured high molecular we
109 the repair of 1-nucleotide loop mispairs in heteroduplex DNA generated during meiotic recombination.
110 ed in the rad51Delta mutant, indicating that heteroduplex DNA has an altered structure, or is process
112 We have analyzed repair of nicked circular heteroduplex DNA in extracts of Exo1-deficient mouse emb
113 port of this, analysis of the arrangement of heteroduplex DNA in the postmeiotic segregation products
114 ation in the yeast Saccharomyces cerevisiae, heteroduplex DNA is formed when single-stranded DNAs fro
115 l repeats can be used for repair showed that heteroduplex DNA is likely to be unwound rather than deg
118 g the process of homologous recombination, a heteroduplex DNA structure, or a 'Holliday junction' (HJ
119 actions between polymerase II (Pol II) and a heteroduplex DNA template do not depend on general trans
120 ces to cleave single base pair mismatches in heteroduplex DNA templates used for mutation and single-
121 phosphorylated RPA initially binds to nicked heteroduplex DNA to facilitate assembly of the MMR initi
123 Bs) but does not progress beyond this stage; heteroduplex DNA, joint molecules, and crossovers are no
130 ous dsDNA undergoes strand exchange yielding heteroduplex dsDNA in site I and the leftover outgoing s
131 d of a double-stranded DNA (dsDNA) and forms heteroduplex dsDNA in site I if homology is encountered.
133 leading end of a RecA/ssDNA filament, while heteroduplex dsDNA unbinds from the lagging end via ATP
134 airing events but, rather, it stimulates DNA heteroduplex extension in the 3' --> 5' direction relati
136 of DNA strand reinvasion or a defect in DNA heteroduplex extension is responsible for the impaired r
137 e stabilizes nascent joint molecules via DNA heteroduplex extension to permit capture of the second p
140 CVR2 exon 3 and 10 microsatellites underwent heteroduplex formation (A(7)/T(8)) in hMLH1(-/-) cells,
141 een homeologous repeats yielded evidence for heteroduplex formation and preferential migration of the
142 ing that mismatches encountered early during heteroduplex formation induce rapid rejection of off-tar
143 dence that DNA strand separation and RNA-DNA heteroduplex formation initiate at the PAM and proceed d
144 racts primarily through base pairing, making heteroduplex formation strictly dependent on complementa
147 elting studies of Watson-Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA ol
149 phoretic analysis of splicing variants where heteroduplexes formed from different variants can produc
150 se H (RNase H) surface hydrolysis of RNA-DNA heteroduplexes formed on DNA microarrays was studied usi
154 omplexes were assembled by using a series of heteroduplex HIS4 promoters, TATA binding protein (TBP),
156 nuclease lobes, accommodating the sgRNA:DNA heteroduplex in a positively charged groove at their int
158 The causes of anomalous migration of Ppd-A1 heteroduplexes in gels were found to be the localization
159 acterized the preference of Pif1 for RNA:DNA heteroduplexes in vitro by investigating several kinetic
160 early step for HR pathways is formation of a heteroduplex, in which a single-strand from the broken D
161 ydrolyzable ATP analogue modulates MutSalpha.heteroduplex interaction in a manner that is distinct fr
164 hat one-sided events reflect events in which heteroduplex is formed predominantly on only one side of
168 Interestingly, binding of MutSbeta to ID heteroduplexes is greatly stimulated when the MutSalpha:
171 te could not be attributed solely to altered heteroduplex melting, strongly suggesting that specific
172 e phosphate groups of the hybridized PNA/DNA heteroduplexes merely through one-step conjugation in th
175 nfected, using clonal frequency analysis via heteroduplex mobility analysis of the second envelope ge
178 assay compared to either the sequence or the heteroduplex mobility assay (HMA)-determined subtypes.
180 this novel long-amplicon method followed by heteroduplex mobility assay combined with single-strande
181 Polymerase chain reaction combined with a heteroduplex mobility assay was subsequently used to eff
183 assessed 64 patients for dual infection with heteroduplex mobility assay, viral sequencing, and phylo
187 and that the tetramer can bind only a single heteroduplex molecule, implying nonequivalence of the tw
189 moduplexes of DNA, aeg-PNA, gamma-PNA, and a heteroduplex of DNA/aeg-PNA with identical nucleobase se
191 striction endonucleases to hydrolyze RNA-DNA heteroduplex oligonucleotide substrates was assessed.
195 vely and repeatedly destroy RNA from RNA-DNA heteroduplexes on gold surfaces; when used in conjunctio
196 o the formation of a high density of PNA/DNA heteroduplexes on the electrode surface for the subseque
197 not be used in analytical methods to resolve heteroduplexes; only with the simplex system can proper
198 some with much lower efficiency than a naked heteroduplex or a heterology free of histone proteins bu
199 most cases, dimorphisms were detected using heteroduplex or single-strand conformational polymorphis
202 mismatch to G-C or T-A, respectively, in the heteroduplex plasmid generates a functional EGFP gene ex
204 and is associated with translocation of the heteroduplex product as well as strand separation of the
205 ors, the MMR system can remove mismatches in heteroduplex recombination intermediates to generate gen
214 Deleting PMS1, MLH2,or MLH3 had no effect on heteroduplex rejection, but a pms1 Delta mlh2 Delta mlh3
219 ided events are the norm but are "hidden" as heteroduplex repair frequently restores the parental con
222 arison of the PNA homoduplex and the PNA-RNA heteroduplexes reveals PNA's intrinsic structural proper
224 ion: it not only determines the guide-target heteroduplex's nucleation and propagation, but also regu
225 resence of sequence heterogeneity in a given heteroduplex sample by introducing a thermal denaturing
228 However, correction of the mismatches within heteroduplex SSA intermediates required PMS1 and MLH1 to
229 and theoretical results suggesting that the heteroduplex stability is insensitive to mismatches.
230 pting a pre-existing stem loop and forming a heteroduplex stabilized by 11 Watson-Crick base pairs (K
231 depends on MutL alpha incision of the nicked heteroduplex strand and dNTP-dependent synthesis-driven
232 ndent instability in the base pairing in the heteroduplex strand exchange product could provide strin
233 ovoked by MeG-T is restricted to the incised heteroduplex strand, leading to removal of the MeG when
234 und that Artemis is capable of nicking small heteroduplex structures and is even able to nick single-
235 RNA-functionalized AuNPs which form DNA-RNA heteroduplex structures through specific hybridization w
236 Here, we identify the substituents on the heteroduplex substrate and the amino acid residues withi
237 e interaction between human RNase H1 and the heteroduplex substrate as well as approaches to enhance
238 gar conformation and helical geometry of the heteroduplex substrate at the catalytic site of human RN
239 rminants in the selective recognition of the heteroduplex substrate by human RNase H1 and offer immed
243 NA elements, and RNA length to slipping on a heteroduplex template using a highly purified human pol
244 active on duplex DNA, were suppressed by the heteroduplex templates, showing that a major function of
246 r trans-T(p) by sequestering trans-T(p) in a heteroduplex that is more stable than homoduplex [T(p).T
247 ence of any mutation on the target DNA forms heteroduplexes that are subsequently denatured from the
248 e (MeG), we have constructed nicked circular heteroduplexes that contain a single MeG-T mispair, and
250 fically recognizes both types of nucleosomal heteroduplexes, the protein bound the mismatch within a
252 genes are denatured and re-annealed to form heteroduplexes; they are then incubated with either comp
253 isense oligodeoxyribonucleotide (ASO) of the heteroduplex to alter the helical geometry of the substr
255 ons of the env gene were examined by using a heteroduplex tracking assay (HTA) capable of resolving t
259 RT followed by 8 weeks on HAART by using the heteroduplex tracking assay and novel statistical tools.
261 erse transcriptase inhibitor therapy using a heteroduplex tracking assay designed to detect common re
263 peripheral blood were determined by use of a heteroduplex tracking assay specific for the EBV gene en
264 od plasma and CSF were characterized using a heteroduplex tracking assay targeted to the V1/V2 hyperv
265 ild-type genotype ratio was measured using a heteroduplex tracking assay targeting tenofovir-selected
266 with matching blood were analyzed by using a heteroduplex tracking assay to distinguish LMP1 variants
268 ax merozoite surface protein 1 gene (Pvmsp1) heteroduplex tracking assay, we genotyped 107 P. vivax i
272 chronic phase of disease, and we analyzed by heteroduplex tracking assays and sequence analysis the d
277 rehensively examine the variability of major heteroduplex type strains by using the entire genome.
278 of the genomes of seven clinically prevalent heteroduplex type strains identified 133 genes from stra
279 fied 6 predominant geographically widespread heteroduplex types (prevalence, > or = 5%) and 14 rare h
280 ex types (prevalence, > or = 5%) and 14 rare heteroduplex types (prevalence, <2%) which are found in
282 cess called large loop repair (LLR) corrects heteroduplexes up to several hundred nucleotides in bact
283 has been employed that combines cleavage of heteroduplexes using the Cel nuclease (Cel I), post-clea
284 Cleavage of a fluorescein-labeled RNA-DNA heteroduplex was monitored by capillary electrophoresis.
285 that the difference in MutS K(d) for various heteroduplexes was attributable to the difference in int
286 kinetic association event of MutS binding to heteroduplexes was marked by positive cooperativity.
288 MSH3, together with MSH2, forms the MutSbeta heteroduplex, which interacts with interstrand cross-lin
289 th temperatures that destabilize or melt the heteroduplex while maintaining the stability of the homo
290 (DSBR) model of recombination predicts that heteroduplexes will be formed in regions that flank the
291 s from a single strand of targeting DNA into heteroduplex with the targeted locus creates a mismatch
292 on, orientation-specific mismatch removal of heteroduplexes with a pre-existing nick was monitored in
293 ing of protease variants isolated as RNA/DNA heteroduplexes with different electrophoretic mobilities
295 nstead, Pif1 is capable of unwinding RNA:DNA heteroduplexes with moderately greater processivity comp
296 vaccine strain resulted in the formation of heteroduplexes with reduced mobility in polyacrylamide g
297 In a sample solution, strands of DV RNA form heteroduplexes with the QD-CPs on the magnetic beads.
298 uman RNase H1 cleavage patterns observed for heteroduplexes with various 3'-DNA/5'-RNA and 5'-DNA/3'-
299 purely based on thermal denaturation of DNA heteroduplexes without the need for enzymatic reactions.
300 tisense oligonucleotides that generated high heteroduplex yield with IGF1R but not insulin receptor t
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