ライフサイエンスコーパス: hydropathy

1 will readily compare data other than protein hydropathy.

2 ase search and pairwise alignment of protein hydropathy.

3 with residues of different charge, size and hydropathy.

4 ition and not molecular volume, polarity, or hydropathy.

5 The resulting changes of charge and hydropathy affected quantitative CQ susceptibility and a

6 Hydropathy analyses indicate that all of these transport

7 Hydropathy analyses indicate that these proteins contain

8 Sequence and hydropathy analyses of GmHSP22, GmHSP22.3, and GmHSP22.5

9 12 transmembrane helices (TMHs), confirming hydropathy analyses of the majority of (prokaryotic and

10 Hydropathy analyses suggest that all of these transporte

11 membrane domain models for G6PT predicted by hydropathy analyses.

12 8% predicted from the amino acid sequence by hydropathy analysis (12 membrane-spanning helices) for t

13 Results consistent with hydropathy analysis are obtained with loops VI/VII, VIII

14 Hydropathy analysis indicated that murine and human MRP,

15 Hydropathy analysis indicates that the protein is highly

16 Hydropathy analysis of FksAp suggests an integral membra

17 Hydropathy analysis of KCC1 indicates structural homolog

18 Hydropathy analysis of the 355-amino acid mouse SCD1 pro

19 A hydropathy analysis of the catalytic domains of differen

20 Hydropathy analysis of the deduced amino acid sequence o

21 Hydropathy analysis of the deduced amino-acid sequence d

22 of right-side-out vesicles with trypsin and hydropathy analysis of the predicted amino acid sequence

23 Hydropathy analysis of the predicted protein and alignme

24 Hydropathy analysis of this protein suggests a model in

25 In addition, hydropathy analysis predicted FRAG1 to encode an integra

26 Hydropathy analysis predicted that CbiB would be an inte

27 Hydropathy analysis predicts that the topology of the Ar

28 Hydropathy analysis predicts three cysteines (C109, C200

29 ructure prediction of NuoM using the Toppred hydropathy analysis showed that the Q-binding peptide ov

30 Hydropathy analysis shows that LHT1 is an integral membr

31 Hydropathy analysis suggests that BCRP consists of a nuc

32 Hydropathy analysis suggests that human PATCHED is an in

33 Our sequence and hydropathy analysis suggests that it can form an amphipa

34 Hydropathy analysis suggests that there are three transm

35 DTT on membranes were obtained using a novel hydropathy analysis that considers the relative free ene

36 d sixth of these are short, not predicted by hydropathy analysis, do not insert independently into mi

37 From hydropathy analysis, rOCT1A is predicted to have 10 tran

38 As defined by hydropathy analysis, the membrane-spanning segments of t

39 Based on hydropathy analysis, we hypothesized that gO could adopt

40 y structure models derived from sequence and hydropathy analysis.

41 lates remarkably well with that predicted by hydropathy analysis.

42 suppositions of structure based primarily on hydropathy analysis.

43 llular space, previously only predicted from hydropathy analysis.

44 nger region than that initially predicted by hydropathy analysis.

45 embrane segments, confirming inferences from hydropathy analysis.

46 sidue-specific interactions due to effective hydropathy and charge.

47 Analysis of hydropathy and consideration of the distribution of char

48 on a subset of key properties (aromaticity, hydropathy and isoelectric point).

49 take (-0.92), a moderate correlation between hydropathy and Pf (0.73), and a minimal correlation betw

50 Hydropathy and structural analyses of the open reading f

51 let change-point performs well for smoothing hydropathy and transmembrane profiles generated using di

52 f glucose uptake and Pf (-0.93), and between hydropathy and uptake (-0.92), a moderate correlation be

53 50 to residues of different size, charge and hydropathy, and examined the effects on adenine nucleoti

54 fields, such as electrostatic potential and hydropathy, are smoothed to further reduce visual comple

55 ane domains was previously proposed based on hydropathy, charge dispersion, and homology to other tra

56 do not change side-chain size, flexibility, hydropathy, charge, or polarizability.

57 a for predicting intrinsic disorder, such as hydropathy, combined with significant net charge, the ve

58 perimental assignments, the empirical charge/hydropathy correlation for the prediction of natively un

59 ce composition space analogous to the charge/hydropathy correlation is observed.

60 Our working hypothesis is that the hydropathy differences in Env associated with IU MTCT al

61 These methods are based on the net charge-hydropathy distribution and disorder prediction score di

62 e; replacements with larger volumes and less hydropathy exhibited higher affinities for glycine.

63 ide range of hydrophobicities (grand average hydropathy (GRAVY) scores of -0.6 to 1.9).

64 ly significant differences in Kyte-Doolittle hydropathy in the signal peptide, C2, V3, and C3 regions

65 Hydropathy index analysis indicated that substitution of

66 ts into a single plot, information about the hydropathy index, Van der Waals volume, chemical propert

67 isoelectric point, sequence length, average hydropathy, low complexity regions (SEG), and combinatio

68 different classification methods, the charge-hydropathy measure and the cumulative distribution funct

69 ne in a manner consistent with the predicted hydropathy model for Na+- and Cl--dependent transporters

70 with the homology model than an alternative hydropathy model of VAChT that likely locates E309 far f

71 S leader caused exclusion of the UL37x1 high-hydropathy mutant from mitochondrial import.

72 s with exceptionally high net charge and low hydropathy near the cytoplasmic end of the central chann

73 L containing human apos is due to the higher hydropathy of human apo A-I, particularly its C-terminus

74 esults suggest that the molecular volume and hydropathy of the amino acid at position 288 in TM3 regu

75 ns revealed a strong correlation between the hydropathy of the amino acid at this position and the GA

76 orrelation between DW dynamics and the local hydropathy of the CheY protein surface, empirically dete

77 However, increased hydropathy of the MTS leader caused exclusion of the UL3

78 Surprisingly, lowered hydropathy of the UL37x1 MTSalpha, predicted to block ER

79 We conclude that the disrupted hydropathy or charge of residues in the heptad repeat of

80 between anesthetic enhancement and polarity, hydropathy, or hydrophilicity of substituents.

81 ribes the use of the concept of inversion of hydropathy patterns to the de novo design of peptides ta

82 distribution function (CDF) analysis, charge-hydropathy plot (CH plot) analysis, and alpha-helical mo

83 Sequence-driven hydropathy plot analysis and in vitro oxidation-induced

84 nsmembrane spanning alpha-helices based upon hydropathy plot analysis of the primary sequence.

85 Hydropathy plot analysis predicts the Limulus choline co

86 However, the hydropathy plot analysis suggests that PRP does not have

87 id sequence of mdr1b P-glycoprotein, and its hydropathy plot analysis, our data indicated that the 3'

88 ere based primarily on the somewhat atypical hydropathy plot for MerF and related transport proteins.

89 The hydropathy plot generated from the deduced amino acid se

90 e for genomic analysis is the ability of the hydropathy plot method to distinguish membrane from solu

91 QPs3 is a very hydrophobic protein; the hydropathy plot of the amino acid sequence reveals three

92 ural model of SdhC, constructed based on the hydropathy plot of the deduced amino acid sequence of th

93 The hydropathy plot of the primary structure of SRII indicat

94 The hydropathy plot suggests that ACAT-1 protein contains mu

95 Using the PHDhtm hydropathy plot, the labeled peptide is located in the t

96 ifs, transmembrane regions, signal peptides, hydropathy plots and profile hits using several popular

97 Hydropathy plots are often used in place of missing phys

98 50 1A2c); these all show slightly dissimilar hydropathy plots compared to the MALLLAVFL... sequence.

99 Hydropathy plots have problems in identifying the sequen

100 e Ytp1 protein appears by computer analysis (hydropathy plots in conjunction with the combined predic

101 Since hydropathy plots indicate that these residues are at the

102 Hydropathy plots of CpsA predict an integral membrane pr

103 Hydropathy plots of HvCBT1 showed the presence of six pu

104 nty of TM helix prediction by sliding-window hydropathy plots of membrane protein (MP) amino acid seq

105 Hydropathy plots of the deduced amino acid sequence of B

106 The hydropathy plots of the deduced amino acid sequences sug

107 nsmembrane segments seen in n-block-averaged hydropathy plots while leaving the remaining hydrophobic

108 V) is considerably smaller than predicted by hydropathy plots, extending only from about Val132 to Ph

109 n to be more accurate than the use of charge hydropathy plots, which are frequently used to predict d

110 ve distribution function analysis and charge-hydropathy plots.

111 In silico analysis (homology searching, hydropathy plotting, and codon usage assessment) strongl

112 ured segments in transmembrane proteins were hydropathy, polarity, and flexibility, and used the resu

113 hat this region of the permease differs from hydropathy predictions.

114 Hydropathy profile analysis showed the Eis protein to be

115 which shares a similar transmembrane domain hydropathy profile as well as transporter-specific amino

116 A hydropathy profile indicates that HpkA possesses only on

117 In P. aeruginosa, the Snr-1 protein hydropathy profile indicates that it is a soluble protei

118 ochondrial membrane is proposed based on the hydropathy profile of the amino acid sequence, on the pr

119 A hydropathy profile of the protein suggests 10 transmembr

120 hu1 cleavability by PI-PLC and its predicted hydropathy profile strongly suggested that Shu1 is a gly

121 This 26-kDa protein has a hydropathy profile suggestive of a single membrane-spann

122 MPI7 is related in sequence, size and hydropathy profile to mammalian proteins (such as rat PR

123 emical properties, such as molecular weight, hydropathy profile, and predicted secondary structure, a

124 This cDNA encodes 354 amino acids that, by hydropathy profile, could form seven transmembrane domai

125 nt containing an H-domain which, in terms of hydropathy profile, is identical to that of a delta pH-d

126 Hydropathy profile-based computer analysis predicted tha

127 rotein and that possesses a nearly identical hydropathy profile.

128 A comparison of their hydropathy profiles (beta-pattern) with known VDAC seque

129 been proposed based on the similarity of the hydropathy profiles and the homology of sequences betwee

130 d, sharing only 43% identity, although their hydropathy profiles remain remarkably similar.

131 de datasets, including amino acid sequences, hydropathy profiles, gene expression data and known prot

132 d secondary predicted protein structures and hydropathy profiles.

133 dings are consistent with a central role for hydropathy rather than size at position 310 of this muta

134 find that an experiment-based whole-residue hydropathy scale (WW scale), which includes the backbone

135 luble proteins to be MPs, depending upon the hydropathy scale used.

136 as the commonly used surface area models or hydropathy scales for characterizing biomolecular hydrop

137 Experiment-based whole-residue free-energy (hydropathy) scales for amino acids in unfolded peptides,

138 phobic interface allowed benchmarking of the hydropathy sequence analysis, an important structural ge

139 odes a protein with significant sequence and hydropathy similarity to mammalian acyloxyacyl hydrolase

140 Here, phylogenetic trees and average hydropathy, similarity and amphipathicity plots for memb

141 Analysis of hydropathy suggests that in OxlT, the oxalate/formate an

142 that significant variations in polarity and hydropathy values among the Akt isoforms in both the ple

143 including one that differed in polarity and hydropathy, were located in the peak signatures and defi