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1 scores and increased penalties for indels in hydrophobic regions).
2 HD phosphohydrolase domain and an N-terminal hydrophobic region.
3 our substitutions outside the amino-terminal hydrophobic region.
4 ins two anion binding pockets separated by a hydrophobic region.
5 nase-HPr interaction occurs mainly through a hydrophobic region.
6 localization sequence, and a single strongly hydrophobic region.
7 and, therefore, is able to dissolve the core hydrophobic region.
8 widespread aqueous access to this generally hydrophobic region.
9 proteins, revealing the presence of unfolded hydrophobic regions.
10 Inhibitors also accessed two hydrophobic regions.
11 of the protein interspersed among the larger hydrophobic regions.
12 that contains a signal sequence and several hydrophobic regions.
13 h two hydrogen bond acceptor groups and four hydrophobic regions.
14 ntermolecular interactions among the central hydrophobic regions.
15 uble nanocages (macrocations) have separated hydrophobic regions.
16 rophilic regions relative to the surrounding hydrophobic regions.
17 hat upon interaction with lipid, the central hydrophobic region (109-132) of the protein is protected
18 Khodorov's pharmacophore, which contains two hydrophobic regions, a third hydrophobic region may enha
19 oxidase, a water molecule is observed in the hydrophobic region above the top of the D path, strategi
20 hydrophobic methylthio group inserts into a hydrophobic region adjacent to the more hydrophilic 5'-h
21 This study analysed the role of the SP, the hydrophobic region after the SP (HRASP), glycosylation a
22 ctors through direct interactions with short hydrophobic regions along its structurally disordered ax
23 binds tightly to IpaB, but the IpaC central hydrophobic region also appears to participate in this b
27 c of negative curvature lipids, with a bulky hydrophobic region and a relatively small hydrophilic he
28 to 42,000 s(-1) in the tightly bound central hydrophobic region and approximately 300 s(-1) in the di
31 r sphaeroides (RsLPS) has a relatively small hydrophobic region and does not stimulate cells or anima
33 acid substitutions within an amino-terminal hydrophobic region and four substitutions outside the am
34 PyMT region containing the membrane-binding hydrophobic region and result is mislocalization of the
35 ntaneously filling the microchannels up to a hydrophobic region and splitting a liquid drop by inject
36 7 (UDPGTh2) isozyme, has a similar conserved hydrophobic region and that the positive factor for its
37 cytosol, indicating that both the C-terminal hydrophobic region and the BH3 domain are required for t
38 hat HIV-1 Tat interacts with both the acidic/hydrophobic region and the BRCT domain of FCP1, whereas
39 respectively, followed by membrane-spanning hydrophobic regions and cytoplasmic carboxyl terminal re
41 ehavior; that is, FRET decreases between the hydrophobic regions and FRET increases for the N- and C-
43 cDNA predicts a 25-kDa polypeptide with four hydrophobic regions and several potential phosphorylatio
44 for potential membrane-penetrating segments (hydrophobic regions) and for lipid-binding sites with hi
45 ) was substituted at the N terminus, central hydrophobic region, and C terminus of all alpha-Syns.
46 mino acid residues (15 kDa), with two highly hydrophobic regions, and resides in the inner membrane o
48 arity to HMG1, the location of the basic and hydrophobic regions, and the site size of the fork arms
49 ind to mitochondria through their N-terminal hydrophobic regions, and their overexpression in tissue
50 and a stromal targeting domain containing a hydrophobic region approximately 60 amino acids from the
51 region and part of the carboxy (C)-terminal hydrophobic region are in direct contact with the protof
55 and mutational analysis, we identify a small hydrophobic region as responsible for this oligomerizati
57 consistent with previous models implicating hydrophobic regions as determinants of Abeta42 aggregati
58 ervative missense mutations within a central hydrophobic region, as well as truncations and frameshif
59 9S variant of PHF8 that modifies a conserved hydrophobic region; assays with both peptides and intact
60 t Hid is localized to the mitochondria via a hydrophobic region at its C terminus and functionally in
61 enterotoxins LTI and LTIIb have a conserved hydrophobic region at the AB(5) interface postulated to
62 single potential N-glycosylation site, and a hydrophobic region at the C terminus, a finding consiste
63 ied two regions, one at the N-terminus and a hydrophobic region at the C-terminus, that jointly contr
66 tant region of interaction between conserved hydrophobic regions at the base of TMD5 and TMD6 that is
67 ical/concave shape, the cross-section of the hydrophobic region being larger than that of the hydroph
68 pontaneously and repeatedly to span the 15-A hydrophobic region between the two known H(+) transport
70 unmodified lipopolysaccharides reaching the hydrophobic region, but was prevented from this penetrat
71 Introduction of negative charges into this hydrophobic region by site-directed mutagenesis disrupte
72 nsient but frequent hydration of the central hydrophobic region by water molecules from the intracell
73 thesized that their unusually long conserved hydrophobic regions cause reticulons to assume a wedge-l
74 and hydroxylated proline enclose a localized hydrophobic region centered on the brominated tryptophan
77 nteracts solely with a portion of the acidic/hydrophobic region containing a conserved LXXLL-like mot
78 ulate that the wild-type VacA amino-terminal hydrophobic region contributes to oligomerization of the
79 On the other hand, mutants with the second hydrophobic region deleted fail to traffic to the plasma
80 90-231, T_PrP), and PrP missing its central hydrophobic region (Delta105-125, DeltaCR_PrP), were equ
83 Through a reaction-diffusion process, the hydrophobic region expands with a sharp transition at th
84 s and proteases, both of which can recognize hydrophobic regions exposed on unfolded polypeptides.
85 whose quantum yield increases when bound to hydrophobic regions exposed upon unfolding of the protei
87 DnaK's binding motif is known to comprise hydrophobic regions flanked by positively charged residu
89 the 32 N-terminal residues, which include a hydrophobic region followed by a net positive charge.
90 of the substrate binding loops, and present hydrophobic regions for potential membrane attachment.
91 transmembrane helices identify eight or nine hydrophobic regions for the SBAT sequences as membrane s
95 quantitative pharmacophores that identified hydrophobic regions, H-bond acceptor sites, and an ioniz
96 id sequence of Trp proteins identifies seven hydrophobic regions (H1-H7) with potential of forming tr
97 beta-sheet association around the C-terminal hydrophobic region; however, it shifts the relative popu
99 s indicate that these proteins contain eight hydrophobic regions (HRs) that could potentially form al
104 dies suggest that selected residues within a hydrophobic region immediately preceding the second memb
106 overall results demonstrate that a localized hydrophobic region in CTx PnIB interacts with conserved
107 alignments, we identified a conserved acidic/hydrophobic region in FCP1 adjacent to its highly conser
108 features were the same hydrophobic slope, a hydrophobic region in residues 35-45, and, in eight of 1
109 ith spastin, and this interaction required a hydrophobic region in spastin that is involved in ER loc
111 N-terminus and those that extended into the hydrophobic region in the C-terminal half of the transit
112 mechanism and discovered that CENP-C binds a hydrophobic region in the CENP-A tail and docks onto the
115 and several charged residues and a conserved hydrophobic region in the N-terminal portion of BovK sen
116 iddle section of the channel deep inside the hydrophobic region in the sodium dodecyl sulfate micelle
117 t the farnesyl group is sequestered within a hydrophobic region in the tail domain in the absence of
119 lysis by the RAOARGOS computer program, this hydrophobic region in UGT1A1 is located between residues
120 n a mixed domain network copolymer utilizing hydrophobic regions in a hydrophilic, water-swellable, p
121 both non-crystalline and crystalline ordered hydrophobic regions in all the EW membranes except the 7
122 pported by (i) the presence of two conserved hydrophobic regions in SSP (hphi1 and hphi2) and (ii) ou
123 We present a new method for the analysis of hydrophobic regions in the binding site of a protein tha
125 y showed that, likely due to the presence of hydrophobic regions in the GO basal plane, the GO membra
126 ions giving rise to the rearrangement of key hydrophobic regions in the tetramer and the formation of
127 w that cholesterol may bind to two nonanular hydrophobic regions in the transmembrane domain of Kir2.
128 A fusion protein containing a mutant VacA hydrophobic region (in which glycine 14 of VacA was repl
129 f these domains in isolation showed that the hydrophobic regions insert obliquely into the bilayer, w
134 he occurrence of two charged residues in the hydrophobic region is expected to destabilize the region
135 ecular dynamics simulations suggest that the hydrophobic region is helical and has a transmembrane or
136 ons, that a precise alignment of the central hydrophobic region is not essential, and that the antipa
138 f the sequence between the first AUG and the hydrophobic region is translated, we produced a specific
139 eates a new N terminus on F1 that contains a hydrophobic region, known as the FP, which intercalates
140 een before, namely, fibril formation both in hydrophobic regions L17-A21 and G37-A42 preceding fibril
141 propensity for beta-strand structure at two hydrophobic regions (Leu17-Ala21 and Ile31-Val36), and t
142 A, and G26A) were introduced into the unique hydrophobic region located near the amino terminus of Va
143 ch contains two hydrophobic regions, a third hydrophobic region may enhance binding to provide nanomo
144 GPs suggests that the conserved Ebola virus hydrophobic region may, in fact, serve as the fusion pep
146 recognition sequence along with an extensive hydrophobic region near the amino terminus, suggesting t
148 t a pivot point formed by a highly conserved hydrophobic region near the middle of the voltage sensor
151 yze the functional role of a unique strongly hydrophobic region near the VacA amino terminus, we cons
153 g of the charged surface patches relative to hydrophobic regions near the C terminus of the protein o
154 proliferation requires an intact N-terminal hydrophobic region necessary for the formation of anion-
155 on data indicate the presence of a collapsed hydrophobic region next to the hairpin that includes app
157 tostability, and localization in the central hydrophobic region of a bilayer all make this pair of pr
160 se results are consistent with burial of the hydrophobic region of alpha-helical LL-37 in oligomeric
161 binds distally to the active site, burying a hydrophobic region of BSSalpha, whereas BSSbeta binds to
162 cent descriptions of the architecture of the hydrophobic region of complex I have resolved one vital
163 tion is attributed to the interaction of the hydrophobic region of E(#) with the hydrophobic patches
164 itric oxide (NO) reaction with O2 within the hydrophobic region of either phospholipid or biological
165 istribution pattern, the putative N-terminal hydrophobic region of FAAH-2 was identified as a functio
167 K7-interacting protein and that the central hydrophobic region of K7 and the carboxy-terminal UBA do
168 ic side-chain of Phe209 to interact with the hydrophobic region of Rho adjacent to its GTP-binding si
169 used to measure electrostatic fields in the hydrophobic region of the active site of human aldose re
171 m new core structures that interact with the hydrophobic region of the AR ligand-binding domain.
172 pids demonstrate that LL-37 inserts into the hydrophobic region of the bilayer and alters the chain p
173 The penetration of the peptide into the hydrophobic region of the bilayer is reflected in a mark
174 e nonpolar fluorophores are localized in the hydrophobic region of the bilayer thus producing minimal
175 e requires insertion of the peptide into the hydrophobic region of the bilayer, the other is much mor
177 ne reveal insertion of DnaA protein into the hydrophobic region of the bilayer; this insertion is acc
181 10-136, a peptide encompassing the conserved hydrophobic region of the human prion protein, has been
183 ses the degree of water penetration into the hydrophobic region of the membrane) more than does (LA)(
185 These spectral changes suggest that the hydrophobic region of the micelle surrounding SWNTs swel
187 t the upstream level, baicalein bound to the hydrophobic region of the myeloid differentiation protei
188 h has a good match between the length of the hydrophobic region of the peptide and the bilayer length
192 phaII to alphaI leads to the exposure of the hydrophobic region of the protein to the aqueous medium.
201 (14)XXXG(18) motif within the amino-terminal hydrophobic region of VacA are essential for membrane ch
204 (21-30) had a high binding propensity to the hydrophobic regions of Abeta(1-42), but only CTFs were f
205 Several conserved histidine residues in hydrophobic regions of CP47 have been shown to be import
206 ar protein homeostasis by binding to exposed hydrophobic regions of incompletely folded or aggregated
207 is based on shape complementarity, matching hydrophobic regions of inhibitor and enzyme, and interac
211 (CpG motifs for TLR-9 stimulation) into the hydrophobic regions of Pluronic F127 micelles, followed
212 egment, indicating that both hydrophilic and hydrophobic regions of RyR1 are necessary for 4-CmC bind
213 iments that support the view that two of the hydrophobic regions of SEL-12 function as the seventh an
214 interactions between the peptide and deeper hydrophobic regions of the membrane provide energy to pe
216 ipid mixture is the packing mismatch between hydrophobic regions of the monopolar lipid hydrocarbon c
218 s in protein solubilization by shielding the hydrophobic regions of the newly extracted protein from
219 cetyloxy and benzyl ring of TAB probes large hydrophobic regions of the p-aminobenzoyl folate binding
220 one initially interacts nonspecifically with hydrophobic regions of the partially denatured HBD and s
222 on effector, we find that the N terminal and hydrophobic regions of the signal sequence affect integr
223 g of longer chain alkyl sulfates by specific hydrophobic regions of these otherwise similar proteins.
226 further FRET increases occur between the two hydrophobic regions of VHL, accompanied by FRET decrease
227 no-8-naphthalenesulfonate demonstrate that a hydrophobic region on L5 becomes exposed upon removal of
229 s alone, organic liquids are confined to the hydrophobic region only if the aqueous liquid first occu
230 ort vesicles by the stromal targeting domain hydrophobic region oriented with the presequence N termi
232 entaacetic acid indicated that the conserved hydrophobic region peptide is not inserted symmetrically
233 ults in burying the 2(')-hydroxyl group in a hydrophobic region (Phe62) of POT1 in addition to elimin
234 a large hydrophobic residue), which is in a hydrophobic region predicted to be a membrane reentrant
235 These studies reveal that changes in the hydrophobic region predicted to be nearest to FeA can in
237 that "bridges" of several water molecules in hydrophobic regions present a problem (rather than a sol
238 SDS is able to prevent the exposure of large hydrophobic regions present in membrane proteins which o
242 The computed PMF indicates that the central hydrophobic region provides the major hindrance for ion
244 conclude that peptides with both charged and hydrophobic regions require combined strategies to preve
245 ansgenic mice identified an eight-amino-acid hydrophobic region required for secretion and incorporat
247 mational change that lead to the exposure of hydrophobic regions responsible for target protein recog
249 to interact with the 1-hydroxyl as well as a hydrophobic region(s) to interact with chemical groups a
251 residue SSP comprises two membrane-spanning hydrophobic regions separated by a short ectodomain loop
252 nd maturation, while the extended C-terminal hydrophobic region serves as a stable membrane anchor fo
255 unit (Met1 to Lys100) and suggested that the hydrophobic region spanning Lys100 to Pro141 defines a d
258 ed in a transformant deleted for part of the hydrophobic region, suggesting that this protein is defe
259 e for a smaller nonpolar residue in the pore hydrophobic region suggests an important role for the la
261 t point mutations outside the amino-terminal hydrophobic region that are known to abrogate vacuolatin
262 a series of site-specific mutations in this hydrophobic region that disrupt transmembrane propensity
263 ted to form an oligomeric interaction with a hydrophobic region that includes the site of a previousl
266 , containing an integrin binding motif and a hydrophobic region that permeabilizes membranes and is h
267 ve residues within the amino terminus of the hydrophobic region that play a critical role in invasion
268 in their catalytic center and in an internal hydrophobic region that shows strong transmembrane prope
269 ay be due to the lack in beta-synuclein of a hydrophobic region that spans residues 73-83 of alpha-sy
270 om temperature, suggesting that there are no hydrophobic regions that are protected from the aqueous
272 a contain spatially distinct hydrophilic and hydrophobic regions that impose a high degree of structu
273 smembrane domains, with two highly conserved hydrophobic regions that might associate with or penetra
274 ture is very similar within the loops of the hydrophobic region, the presence of two unique residues
275 ain, a large C-terminal segment, and several hydrophobic regions thought to multiply span the subrhab
276 nt mutants showed that borrelidin binds to a hydrophobic region (Thr-307, His-309, Cys-334, Pro-335,
277 te that, rather than being merely additional hydrophobic regions to promote insertion, the signal pep
278 how that during activation the extracellular hydrophobic region undergoes major changes involving an
281 molecular docking to identify the additional hydrophobic region uniquely conserved in flavivirus MTas
282 drophobic perturbations in the middle of the hydrophobic region, we have individually replaced the al
283 de chain chemistry and length of the helical hydrophobic region, we synthesized, purified, and perfor
284 sensitivity is primarily due to the exposed hydrophobic regions, we mutated residue beta Gly86 at th
285 reas short fragments with only a cationic or hydrophobic region were cell-permeant without the attend
287 c islands, as small as 500 nm, surrounded by hydrophobic regions were prepared using lithography and
288 In BenM, benzoate also bound in an adjacent hydrophobic region where it alters the effect of muconat
289 known to interact with phospholipids and has hydrophobic regions which could bind to the hydrophobic
290 indicated conservation of N- and C-terminal hydrophobic regions which have the hallmarks of secretor
292 he shape of the molecules, especially in the hydrophobic region, which induces dramatic transformatio
293 hat formed van der Waals interactions with a hydrophobic region within the AMP binding site and by re
294 t NY-1V G1 tail degradation are present in a hydrophobic region within the C-terminal 30 residues of
295 of the interaction of these agents with the hydrophobic region within the C1 domains was investigate
298 tromal targeting domain, indicating that the hydrophobic region within this domain functions as a sto
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