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1 N-terminal methionine if it is followed by a hydrophobic residue.
2 found at a position typically occupied by a hydrophobic residue.
3 related with the decrease in the size of the hydrophobic residue.
4 D access tunnel and are exposed to multiple hydrophobic residues.
5 endent on an ordered sequence of charged and hydrophobic residues.
6 tact the phospholipid bilayer with basic and hydrophobic residues.
7 by binding sites characterized by acidic and hydrophobic residues.
8 Pro-392, and Thr-396, were mutated to small hydrophobic residues.
9 kelihood, medium/long-range contacts between hydrophobic residues.
10 and the subsequent re-packing of the N-lobe hydrophobic residues.
11 e barrel core is fastened by three layers of hydrophobic residues.
12 ction between multiple aligned ion pairs and hydrophobic residues.
13 re both the N-terminal and the 48 C-terminal hydrophobic residues.
14 bordered a drug-binding cavity dominated by hydrophobic residues.
15 phobicity equivalent to that of 5 contiguous hydrophobic residues.
16 cious binding locus lined with predominantly hydrophobic residues.
17 .3 that is based on two consecutive pairs of hydrophobic residues.
18 he protein collapse, mainly by burying their hydrophobic residues.
19 spanning channel to minimize the exposure of hydrophobic residues.
20 noncomplementary or uniform distribution of hydrophobic residues.
21 restores membrane binding after mutating the hydrophobic residues.
22 ments are necessary to achieve the burial of hydrophobic residues.
23 eractions with the RGD motif plus downstream hydrophobic residues.
24 activity and substrate cleavage upstream of hydrophobic residues.
25 -cage's interior and the hydration of buried hydrophobic residues.
26 vesicle surface through its regularly spaced hydrophobic residues.
27 ed in glutamines/asparagines and depleted in hydrophobic residues.
28 us amino acid sequences containing basic and hydrophobic residues.
29 e region of Eis (residues 28-37) bearing key hydrophobic residues.
30 ly of AT1R homomers with a specific focus on hydrophobic residues.
31 a central cavity containing highly conserved hydrophobic residues.
32 n is the result of the membrane insertion of hydrophobic residues adjacent to the PI(3)P binding site
33 ng from the active site consisting mostly of hydrophobic residues, an environment well suited for fat
34 sequence, a spacer amino acid followed by a hydrophobic residue and a C-terminal vicinal disulfide m
35 pare peptide mixtures containing one type of hydrophobic residue and one type of cationic residue.
36 ng a narrow stretch of highly conserved gp41-hydrophobic residues and a critical arginine or lysine j
37 synergistic combination of both charged and hydrophobic residues and achieves the best binding metal
38 t Abeta42 oligomer has a minimal exposure of hydrophobic residues and is further stabilized by the E2
39 en-binding pocket, architecturally important hydrophobic residues and the hydrogen-bonding network ar
40 which become more favorable as the number of hydrophobic residues and thus van der Waals interactions
41 ane pore, closed by three rings of conserved hydrophobic residues, and has a cytoplasmic cavern with
43 the carbohydrate-binding pockets, aliphatic hydrophobic residues are disfavored, whereas aromatic si
45 same side of the spiral diagrams, where most hydrophobic residues are positioned at a and d, and most
47 ues adopt interfacial positions, and several hydrophobic residues are within the membrane interior.
48 the first two residue sidechains complement hydrophobic residues around the active site, while the t
50 domain experience strong solvent exposure of hydrophobic residues as well as partial unstructuring up
52 y of the substituted residue, showing that a hydrophobic residue at position 290 controls the energy
56 -terminally (i.e., at the P1 position) and a hydrophobic residue at the second position following the
58 rylation of TP motifs that are surrounded by hydrophobic residues at both -1 and +1 positions plays a
60 ependent accessibility is delineated by four hydrophobic residues at homologous positions in each dom
61 P4, tryptophan or leucine at P2, arginine or hydrophobic residues at P1, and alanine or asparagine at
62 receptors containing each of four different hydrophobic residues at position 195 served as input dat
63 sidue at the Tyr(P)-2 position, and aromatic hydrophobic residues at positions Tyr(P)-3 and beyond.
68 he HIV-1 fusion peptide, comprising 15 to 20 hydrophobic residues at the N terminus of the Env-gp41 s
69 peptidase with a preference for cysteine and hydrophobic residues at the N terminus of the hydrolyzed
71 ng affinity derives from burial of preferred hydrophobic residues at the P1, P4, and P2' positions of
72 s, the likely presence of adjacent polar and hydrophobic residues at the protein-membrane interface.
80 bly arise from the introduction of two bulky hydrophobic residues by the substitutions Gln226Leu and
82 celle interaction include the anchoring of a hydrophobic residue cluster into gaps in the reverse mic
83 quire an alpha-helical motif containing four hydrophobic residues, common to many alpha-actinin ligan
84 Consistent with a specificity for exposed hydrophobic residues, competition from native BSA only w
85 ility along an internal conduit of conserved hydrophobic residues, connecting the domain interface wi
86 Y-shaped, 18-20 A in length and comprised of hydrophobic residues, connecting the protein surface wit
87 ffer-Edmundson helical wheel representation, hydrophobic residues consisting of leucine were all foun
88 ining hydrogen-bonding networks, whereas the hydrophobic residues constrain the positioning of the ca
89 ing this short motif by inserting additional hydrophobic residues creates very powerful ADs that bind
92 ermediate proteasomes fail to cleave between hydrophobic residues, despite a higher chymotrypsin-like
93 molecules at the interface between some key hydrophobic residues (e.g. Trp-64) and MoS2 surface also
95 y 4G8, suggesting that the chaperone shields hydrophobic residues exposed on the oligomeric assemblie
101 data support a model in which small neutral hydrophobic residues facilitate the post-translational c
102 ence of typical CXC pattern, with X being an hydrophobic residue facing towards the hydrophobic cavit
103 ition, we show with ASLV EnvA that the bulky hydrophobic residue following the CX(6)CC motif is requi
105 revealed a cis-prenyl transferase fold with hydrophobic residues for isoprenoid binding and a second
107 homologs, predicted the importance of three hydrophobic residues forming a patch on the surface of I
108 ure of an Atg7(NTD)-Atg3(FR) complex reveals hydrophobic residues from Atg3 engaging a conserved groo
111 tagenesis analysis shows that four conserved hydrophobic residues from the identified binding motif a
113 s also revealed the presence of a cluster of hydrophobic residues from transmembrane domains 2, 3, an
114 mulations, suggesting that I364 and adjacent hydrophobic residues function as a hydrophobic gate that
115 acement of Gly(332) and Leu(336) with larger hydrophobic residues (G332A and L336F) selectively augme
117 , where the buried positions are composed of hydrophobic residues, Hec1 possessed an unusual distribu
118 s and (ii) an increased exposition of buried hydrophobic residues, however it was observed a decrease
119 ch helps position the side chains of two key hydrophobic residues (I170 and L230), over the carboxyla
120 ace made available by replacement of a bulky hydrophobic residue in homologous bacterial ENRs by Ala
121 pocket between TM-III and TM-V and that the hydrophobic residue in position III:16 constitutes a gat
124 mutagenic studies have shown that loss of a hydrophobic residue in this region can disrupt this resi
125 Our previous studies identified a single hydrophobic residue in trans-membrane domain 7 of class
129 this configuration, MutY, surprisingly, uses hydrophobic residues in combination with hydrophilic res
133 10E8 indeed binds lipid bilayers through two hydrophobic residues in its CDR H3 (third heavy-chain co
136 id profiles indicated a higher proportion of hydrophobic residues in OD-FPH and hydrophilic residues
138 (R(h)>/=30 A) and contains local clusters of hydrophobic residues in regions that correspond to the f
139 ology of the two domains, a network of large hydrophobic residues in RRM2 provides a possible explana
146 at is driven by interactions of cationic and hydrophobic residues in the first EF-hand sequence.
149 over, site-directed mutagenesis of conserved hydrophobic residues in the JD (F363A/I364A, L356A, and
151 diates, each with a nonnative arrangement of hydrophobic residues in the MDM2 binding cleft, control
154 hase are induced by a unique motif featuring hydrophobic residues in the N1 and N2 positions adjacent
155 2-P2' region, demonstrating a preference for hydrophobic residues in the non-prime and hydrophilic re
157 showing predicted molecular interactions of hydrophobic residues in the S4 segment in disulfide-lock
162 ominent hydrophobic patch; reversion of four hydrophobic residues in this patch to their hydrophilic
165 state is locked between the backbone and two hydrophobic residues in transmembrane (TM)-III, upon act
168 rface charges and increased accessibility of hydrophobic residues (including the nuclear export seque
169 er surface and packs into its core conserved hydrophobic residues, including the Ile at position 181
170 domain bound sequences enriched in basic and hydrophobic residues, indicating that PTN conforms to th
171 and charge distribution, with predominantly hydrophobic residues, interspersed by some uncharged pol
172 e partitioning is driven by the insertion of hydrophobic residues into large packing defects that are
173 he Rop sequence to combine a specific set of hydrophobic residues into strikingly different hydrophob
174 1) Env in which expulsion of the final bulky hydrophobic residue is important for early conformationa
175 an intracellular gate composed of a ring of hydrophobic residues is not only responsible for regulat
176 tein involving conservative substitutions of hydrophobic residues, key positions have been identified
178 ing interact with a complementary cluster of hydrophobic residues (L302, I364, and L393) in the beta-
179 bril-forming peptides, we identified rows of hydrophobic residues ("ladders") running across beta-str
180 conjugation to PTT and increased exposure of hydrophobic residues led to a significant increase in it
181 Helix unwinding at the C-terminus allows key hydrophobic residues (Leu383 and Phe385) to make more ex
183 eed other intrinsically disordered proteins, hydrophobic residues likely drive Cdc42-ACK binding.
185 w the functional role of a highly conserved, hydrophobic residue located at the tip of each of the tw
186 s been attributed to the presence of a bulky hydrophobic residue located directly below the cofactor.
187 tructure-based mutagenesis for the conserved hydrophobic residues located in domain I significantly r
190 ne was determined, suggesting that burial of hydrophobic residues may be a driving force for assembly
194 path (global); and repacking of a cluster of hydrophobic residues near the extracellular vestibule (l
195 ) consensus motif (PsiKX(D/E, where Psi is a hydrophobic residue)) near the scaffolding domain and th
197 on with new interactions between neutral and hydrophobic residues of about the same size: D231L/K178V
202 addition, Nfs1 was found to require the same hydrophobic residues of Isu for binding, as does Jac1, s
203 -directed mutagenesis on the surface-exposed hydrophobic residues of pvLAAD INS, and we found that th
204 sical analysis demonstrates that the central hydrophobic residues of the cap are essential to allow a
206 o the known requirements of the aromatic and hydrophobic residues of the core motif, we found the int
208 ion loop and alphaC-helix and an ensemble of hydrophobic residues of the Regulatory spine and Shell.
209 rane-proximal external region aromatics with hydrophobic residues of the transmembrane domain, and co
211 s indicate methionine oxidation perturbs key hydrophobic residues on one face of helix-C as follows:
212 and immunoprecipitation analyses implicated hydrophobic residues on one face of the M2AP galectin fo
216 affecting the relative placing of charged or hydrophobic residues on the helix severely impacted the
218 substituent on the isocoumarin inhibitor and hydrophobic residues on the protease reflect S' subsite
219 econfiguration rate is slow enough to expose hydrophobic residues on the same time scale that bimolec
220 econfiguration rate is slow enough to expose hydrophobic residues on the same time scale that bimolec
222 face residues, whereas basic and hydrophilic/hydrophobic residues only mildly modify its density.
224 were obtained by modification of individual hydrophobic residues or a predicted salt bridge, suggest
227 nning mutagenesis of MBM1, we found that the hydrophobic residues Phe(9), Pro(10), and Pro(13) are mo
228 n the complexes, where the three highlighted hydrophobic residues Phe, Trp, and Leu dominate PMI or (
229 , and E-III (the FVYL pocket, comprising the hydrophobic residues Phe-1012, Val-1025, Tyr-1089, and L
232 affinity by distinct mechanisms; mutation of hydrophobic residues primarily alters association rate c
233 d TM-V into a tight pocket generated by five hydrophobic residues protruding from TM-III and TM-V.
234 d to strongly discourage the exposure of any hydrophobic residues, providing an enhanced hydrophobic
237 negatively charged, positively charged, and hydrophobic residues, respectively, together forming a u
238 the H protein, we identified two neighboring hydrophobic residues responsible for severe F-to-H bindi
239 hanges and possible burial of some antigenic hydrophobic residues resulted in reduction of antigenici
240 gnals have inherent flexibility and specific hydrophobic residue(s), which together constitute the ub
242 e, we characterized 26 Ala mutants of buried hydrophobic residues, spanning the three helices of the
243 volutionarily conserved pattern of polar and hydrophobic residues specifying recognition of discrete
245 pendent accessibility is demarcated by an S6 hydrophobic residue; substituted cysteines above this si
248 Residues P193 and W222 comprise a series of hydrophobic residues surrounding the cofactor binding si
249 of high negative charge density and aromatic/hydrophobic residues that are distributed across the pro
250 son with other PYD structures, we identified hydrophobic residues that are essential for the stable f
251 ll interface residues, we identified several hydrophobic residues that are important for AHR dimeriza
252 erve that, although mutation of four surface hydrophobic residues that are unique to RelB does not af
253 es of 8-15 amino acids with regularly spaced hydrophobic residues that bind the export karyopherin CR
254 tions in hydrated powders, whereas it is the hydrophobic residues that experience the more pronounced
255 The m04 interior was packed by a myriad of hydrophobic residues that form distinct clusters around
256 s, we identified two acidic residues and two hydrophobic residues that form the peptide ligand bindin
257 the ATP binding cleft contained a number of hydrophobic residues that occlude ATP binding as expecte
258 n IRF-7 derives from a unique combination of hydrophobic residues that pack against the protein core.
259 l egress as cellular assays demonstrate that hydrophobic residues that penetrate deeply into the plas
260 stoyl switch), exposing a prominent patch of hydrophobic residues that specifically contact phosphati
261 sensus sequence motif of AOPXW (where O is a hydrophobic residue) that is highly conserved in the maj
262 not with the sign of the charges, while for hydrophobic residues, the surface densities are uncorrel
264 In the negative peptides, two changes of hydrophobic residues to glycine were especially abundant
265 sis revealed strict segregation of polar and hydrophobic residues to opposite faces of a predicted al
268 between TM segments in the closed state pull hydrophobic residues together to form a hydrophobic plug
269 r deducing a rule for SLC6 family members: a hydrophobic residue (Tyr or Val) in the +2 position spec
270 sting that, for peptide-CPP chimeras, distal hydrophobic residues upstream of the CPP sequence can ha
271 ment analysis demonstrates that a cluster of hydrophobic residues (V101, L104, and V162) within the C
273 roles of the platform His115-Arg127 and the hydrophobic residues Val120 and Leu123 in dG:dGTP misinc
274 tion by site-directed mutagenesis of barrier hydrophobic residues (Val50, Leu54, Leu170, Leu174) to a
275 fundamentally differentiates it from purely hydrophobic residues, we have used in vitro cellular exp
276 s on newly exposed protein surfaces, several hydrophobic residues were mutated, two polypeptide segme
277 hobic interaction between the side chains of hydrophobic residues were still partly retained, imparti
278 nus side of the HA PCS (P2 position) avoided hydrophobic residues, whereas the P3 position avoided hy
279 side chains of Tyr-131 and Ala-134 with core hydrophobic residues, whereas the reactive center loop h
280 cognized conserved motif, PXGG (X is a large hydrophobic residue), which is in a hydrophobic region p
281 es in four pockets by contributing different hydrophobic residues, which are spread along the subunit
282 red by exposure of as few as five contiguous hydrophobic residues, which defines the minimum window o
283 embrane-binding domain composed of basic and hydrophobic residues, which is necessary and sufficient
286 mentation studies reveal a requirement for a hydrophobic residue with long side chains at this positi
287 s simultaneous substitution of four aromatic/hydrophobic residues with Ala dramatically impairs both
290 structs containing substitutions of the most hydrophobic residues within each of the two fusion loops
292 orroborates mutagenesis implicating multiple hydrophobic residues within the AI segment that contribu
293 ulations, here we identified single aromatic/hydrophobic residues within the amyloid core IAPP region
294 directed mutagenesis was used to explore the hydrophobic residues within the MD-2 binding pocket as t
296 site-directed mutagenesis of outward-facing hydrophobic residues within the transmembrane region of
298 s demonstrate that mutations in a cluster of hydrophobic residues within transmembrane domain 1 affec
299 is governed by an HbYX motif (where Hb is a hydrophobic residue, Y is tyrosine, and X is any amino a
300 The C-terminal HbYX motif (where Hb is a hydrophobic residue, Y is tyrosine, and X is any amino a
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