ライフサイエンスコーパス: identifier

1 data is added, and does not require a common identifier.

2 data for individual TcRs to their respective identifier.

3 organism, clone name, gene name and sequence identifier.

4 ethylation reprogramming and as a cell state identifier.

5 ta were linked via patients' unique personal identifier.

6 species, family and clan has its own unique identifier.

7 multiphasic CT images blinded to the patient identifiers.

8 volume was calculated using unique hospital identifiers.

9 ical record databases using encoded personal identifiers.

10 nce Read Archive (SRA) via unique persistent identifiers.

11 used to match source identifiers with target identifiers.

12 ene are assigned unique, tracked integers as identifiers.

13 erging technologies that use single-molecule identifiers.

14 r-service claims data using indirect patient identifiers.

15 earching by MD5 digests or external database identifiers.

16 on of data by removal of a predefined set of identifiers.

17 actions with an assortment of gene and miRNA identifiers.

18 acilitate the creation and resolution of the identifiers.

19 mes and linked where possible to Entrez Gene identifiers.

20 ent, and IOL calculation sheet with 2 unique identifiers.

21 of normalizing gene mentions to Entrez gene identifiers.

22 NOMED CT and OMIM disease-specific terms and identifiers.

23 inked to CMS inpatient claims using indirect identifiers.

24 hich is subsequently queried for overlapping identifiers.

25 which can be searched by PDB codes and Pfam identifiers.

26 of ribonucleotides corresponding to specific identifiers.

27 the information does not contain any subject identifiers.

28 d organisms without relying on gene names or identifiers.

29 igned unique, stable and tracked integers as identifiers.

30 o extract standardized lists of EnsEMBL gene identifiers.

31 ures that served as highly accurate sequence identifiers.

32 pts of interest, e.g. EC numbers, GO and SBO identifiers.

33 d their subsequent normalization to database identifiers.

34 al named entities in text to unique database identifiers.

35 d take in the design, provision and reuse of identifiers.

36 taxon names, taxon identifiers, or sequence identifiers.

37 for counting the number of unique molecular identifiers.

38 ort, academic degrees obtained, and personal identifiers.

39 rmalized to 11 755 unique cell line database identifiers.

40 r a pathogen serovar and for genome sequence identifiers.

41 Trial Registration: eudract Identifier 2005-003463-23.

42 Clinical study identifier 999910/204 (SERO-EPI-IS-204).

43 tein identifiers, protein sequences and gene identifiers across over 100 different source databases.

44 coding criteria, and completeness of patient identifiers, admission, procedure, discharge and death d

45 hort were identified by database linkages of identifiers among the CHDS, Kaiser Permanente database,

46 d in text to their corresponding Entrez gene identifiers an extremely difficult task.

47 clude changes to policies regarding sequence identifiers, an improved 16S submission wizard, targeted

48 tabase can be searched by PDB entry, cluster identifier and IMGT germline group (e.g. human IGHV1).

49 ies, each with its own data format, molecule identifier and information coverage.

50 Each seed is tracked by an identifier and, after phenotyping, can be planted, sorte

51 nodes annotated with NCBI numbers or UniProt identifiers and (optionally) Protein Data Bank structure

52 ies, reanalyzing primary data, unifying gene identifiers and applying ad hoc computational analysis t

53 rocedure, but 80-83% completeness of patient identifiers and date related items.

54 OCT cube scans were stripped of all clinical identifiers and exported.

55 PubMed identifiers and external cross references are collected

56 l, and substance use disorders with location identifiers and socioeconomic correlates published betwe

57 ructural features were devised as riboswitch identifiers and tested on Bacillus subtilis, Escherichia

58 data set that contains no linkage to patient identifiers and that is HIPAA compliant, no institutiona

59 e command-line tool for converting molecular identifiers and their contained loci and variants betwee

60 allow search by UniProt code or Pfam domain identifier, and results can be filtered by domain, organ

61 adings, using both KEGG and PubChem compound identifiers, and based on statistical tests for associat

62 clinical data using encrypted unique client identifiers, and data are processed and de-duplicated to

63 , assignment of semantically typed universal identifiers, and implementation of a procedure for stori

64 in data formats and scale, a lack of common identifiers, and the disproportionate contribution of a

65 possible to replace this with other texture identifiers, and we plan to explore this in future work.

66 ntification of DSBs through unique molecular identifiers; and (4) easy scalability and multiplexing.

67 ol or workflow functions), types of data and identifiers, application domains and data formats.

68 s and mortar that make integration possible; identifiers are a core component of this integration inf

69 Two important identifiers are phosphoinositides and GTP-bound GTPases,

70 act that it may not be representative of the identifier as a whole.

71 y (PubMed Entrez search) or a list of PubMed identifiers as input.

72 dical Birth Register using a unique 10-digit identifier assigned to all live births and new residents

73 D case subjects were ascertained from unique identifiers assigned to all Swedish residents and linkag

74 Using physician identifiers available in the database, surgeons were ide

75 We present an approach to inclusion of tract identifiers based on multiply imputed, synthetic data.

76 s naive/memory cells, with shallow, multiple identifier-based HTS of ASTs identified by activation ma

77 However, taxonomic names have limitations as identifiers, being neither stable nor globally unique, a

78 h them is not merely based on class names or identifiers but rather on the knowledge the ontologies c

79 a methodology for converting between genomic identifiers by first mapping them onto a common universa

80 erence mouse and human genomes with a stable identifier (CCDS ID), and ensures that they are consiste

81 ty assurance tests are tracked with a stable identifier (CCDS ID).

82 ll molecules are defined by PubChem Compound Identifiers (CIDs); ligand capture also includes peptide

83 We develop molecular identifier clustering-based immune repertoire sequencing

84 tures, encoded by the International Chemical Identifier code (InChI) or InChIKey.

85 vert has many potential uses, including gene identifier conversion, identification of features within

86 The Protein Identifier Cross-Reference (PICR) service is a tool that

87 European Bioinformatics Institute's Protein Identifier Cross-Reference (PICR) service is used to res

88 then utilized a novel approach, Cognate Site Identifier (CSI) arrays, to define a comprehensive DNA-b

89 linked this information to National Provider Identifier data, identified a set of distinct provider n

90 this study, we present the DNA-Binding Site Identifier (DBSI), a new structure-based method for pred

91 the webserver interface to DNA Binding Site Identifier (DBSI), a powerful structure-based SVM model

92 ts and database records, aggregating sets of identifiers denoting the same biomedical concepts across

93 ty of this tool allows for custom definition identifier domains contingent upon the availability and

94 nd reliable mechanism for conversion between identifier domains of interest.

95 German Clinical Trials Register identifier DRKS00004619.

96 Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assis

97 of metabolite features were matched to KEGG identifiers, enabling pathway enrichment analysis.

98 final prognostic model (Early Severe Dengue Identifier [ESDI]) included history of vomiting, platele

99 Identifier filtering (IDF) selects features with more tr

100 ne list containing any number of common gene identifiers followed by analysis using one or more text

101 tential of DTIM-MS for providing a molecular identifier for a broad range of discovery based analyses

102 kely to use their own International Resource Identifier for conceptually the same resource or databas

103 rgan Procurement and Transplantation Network identifiers for 4,650 living kidney donors in 1987 to 20

104 rgan Procurement and Transplantation Network identifiers for 4650 living kidney donors in 1987 to 200

105 finding interactions based on gene names and identifiers for a number of common model organisms and h

106 tient Sample, discharge records with surgeon identifiers for all nontrauma PR (n = 3581) were examine

107 and retrieve annotation and cross-reference identifiers for an expanded number of species.

108 pread failure to use robust, globally unique identifiers for biodiversity data.

109 We also report the creation of systematic identifiers for C. albicans genes and sequence features

110 as HGVS nomenclature for variants and MedGen identifiers for conditions.

111 s unique, perennial and location-independent identifiers for data used in the biomedical domain.

112 v) improved support for alternative database identifiers for genes, proteins and microarray probes an

113 inally, PANTHER now includes stable database identifiers for inferred ancestral genes, which are used

114 atabase wherein national transplant registry identifiers for kidney transplant recipients were linked

115 ein Organ Procurement and Transplant Network identifiers for kidney transplant recipients were linked

116 We examined a database linking U.S. registry identifiers for living kidney donors (1987-2007) to bill

117 Special identifiers for peptidases from a variety of model organ

118 e organelle to another, recognizing specific identifiers for the donor and acceptor membranes.

119 that combines Tn5 transposase and molecular identifiers for the highly accurate sequencing of amplic

120 E CT algorithm was used to generate specific identifiers for uric acid (77-80 U(Slope), one outlier),

121 download gene signatures in most common gene identifier formats.

122 However, these identifiers frequently overlap among the different asthm

123 ding disparate biological currency-molecular identifiers from different databases.

124 We linked identifiers from the Organ Procurement and Transplantati

125 e and subcellular compartment, as well as by identifiers from UniProt, Ensembl and TAIR resources.

126 In addition, gene identifiers from UniProtKB and Ensembl can now be submit

127 WebGestalt supports 8 organisms and 201 gene identifiers from various databases and different technol

128 Gestalt 2017 supports 12 organisms, 324 gene identifiers from various databases and technology platfo

129 eried by accession numbers, species-specific identifiers, gene name or keyword.

130 to treatment assignment by the use of unique identifiers generated during randomisation.

131 expression of consensus molecular subtype-4 identifier genes also exhibited high lymphangiogenic gen

132 HOPCHOP accepts a wide range of inputs (gene identifiers, genomic regions or pasted sequences) and pr

133 sion of 53 species for a given list of input identifiers, genomic sequence, or genome intervals.

134 Sharing sequencing data sets without identifiers has become a common practice in genomics.

135 r diseases, and normalizing them to database identifiers have become an important step in many text a

136 To date, tract identifiers have been left off the research files becaus

137 Reaction and metabolite identifiers have been standardized across models to conf

138 multilevel data sets that include geographic identifiers have heightened sociologists' interest in sp

139 d gas production data by well using a unique identifier (i.e., API number) would also allow for refin

140 Rs and lncRNAs that contain a B1, B2, B4, or identifier (ID) element.

141 Identifier (ID) mapping establishes links between variou

142 The mean amount received per physician identifier (ID) was $1108 (range, $1-$397 849), and the

143 ifferentiating embryonic stem cells, Network-Identifier identified a gene regulatory network among 87

144 y analysis tool for a wide array of species, identifiers (IDs), pathways, ontologies and gene sets.

145 out using information about unique molecular identifiers) improved upon the repertoires constructed b

146 blood eosinophilia as second most important identifier in principal component analysis.

147 The first step, finding out whether an identifier in the user's sample corresponds to an entity

148 n from the UCSC browser, and will accept SNP identifiers in dbSNP or 1000 Genomes format.

149 ng approaches focus on finding gene names or identifiers in English text.

150 We focus strongly on web-based identifiers in the life sciences; however, the principle

151 portant considerations for those referencing identifiers in various circumstances, including by autho

152 istry and which provides directly resolvable identifiers, in the form of Uniform Resource Locators (U

153 Classic supercooled liquids exhibit specific identifiers including microscopic relaxation times diver

154 atch conversions of the most common compound identifiers, including CAS, CHEBI, compound formulas, Hu

155 networks may be related to complex personal identifiers, including health, age, and ability.

156 itals across 12 states that reported surgeon identifier information over the 8-year period.

157 We demonstrate the utility of this identifier integration approach by answering queries acr

158 As with any molecular identifier, interlaboratory standardization must precede

159 The lack of correspondence between identifiers introduces a barrier when executing federate

160 TRIAL REGISTRATION: isrctn.org Identifier: ISRCTN30019040.

161 controlled-trials.com Identifier: ISRCTN41196151.

162 lopedia of Genes and Genomes (KEGG) ortholog identifiers (KOIs), and to determine a strategy that max

163 molecules, providing electronic descriptors, identifiers, link-outs and calculated molecular properti

164 have relied on taxonomic names as the shared identifier linking records in different databases.

165 Identifier mapping (IDM) is needed when an analyst is co

166 anogaster S2 cell line expressing centromere identifier-mCherry and Ndc80-green fluorescent protein t

167 The Network-Identifier method utilized a thermodynamic model for gen

168 cies definition: the MiSI (Microbial Species Identifier) method, be used to address previous inconsis

169 tries and are given unique, stable six-digit identifiers (MIM numbers).

170 Unique identifier: NCT 00351260.

171 Unique identifiers: NCT 00289822, NCT 00284713, NCT 00326989, N

172 Unique identifiers: NCT00209339 and NCT00209274.

173 Unique identifier: NCT00262600.

174 Clinical Trials.gov identifier: NCT00383071.

175 Clinical Trials.gov identifier: NCT00442169.

176 Unique identifiers: NCT00487994, NCT00143663, NCT00143676, NCT0

177 5, ELM-PC-4, and COMET-1- ClinicalTrials.Gov identifiers: NCT00638690, NCT00974311, NCT01193257, NCT0

178 CLINICAL TRIALS.GOV IDENTIFIER: NCT01037205.

179 istered on the clinical trials.gov database (Identifier NCT01448902).

180 identifier: NL34509.000.10 and trialregister.nl identifi

181 es and in its current state has 153 database identifiers (nodes) covering all aspects of biology incl

182 Omics data with gene identifiers not supported by WebGestalt and functional c

183 ntifier: NL34509.000.10 and trialregister.nl identifier: NTR3103.

184 ROC analysis identified RBP4 as a sensitive identifier of ATTR V122I amyloidosis (area under the cur

185 sation was by SX number, a sequential unique identifier of each woman within the NHSBSP, and at the b

186 nd specificity of mutations provide a unique identifier of eukaryotic origins of replication.

187 h ipsilateral acute TIA/IS as an independent identifier of events, thereby supporting the dominant di

188 as the role of the cap 2'O methylation as an identifier of self RNA in the innate immune system again

189 Here, we present GLITR (GLobal Identifier of Target Regions), which accurately identifi

190 pothesized that CGRP may provide a molecular identifier of the CO2 arousal circuit.

191 Each test is assigned a stable identifier of the format GTR000000000, which is versione

192 amino acid-substituted GTPase RbgA and is an identifier of the translational GTPase family.

193 behavior, providing cellular and anatomical identifiers of behavioral and possible therapeutic signi

194 ifts, and pRF scaling in SPZs are not unique identifiers of cortical reorganization; rather, they can

195 PubServer automatically collects identifiers of homologous proteins using PSI-Blast, retr

196 an approach for automatically mapping formal identifiers of neuroanatomical regions to text found in

197 aloged the various names, orthologs and gene identifiers of spliceosome proteins to navigate the comp

198 enitor spermatogonial transition and precise identifiers of subtypes in the process are undefined.

199 lopment of invasive fungal disease (IFD) and identifiers of the causative organism, although data sup

200 cations and databases use different database identifiers or even trivial names which disable queries

201 xample, barcoding techniques (i.e. Multiplex Identifiers or Indexing) use short oligonucleotides to d

202 , nearby gene names or other genomic feature identifiers, or in bulk format using categories includin

203 axonomic classifications, taxon names, taxon identifiers, or sequence identifiers.

204 data are not linked to demographic or social identifiers, or to information about the disease status

205 uses the identifier patterns defined in the Identifiers.org Registry to generate a plurality of iden

206 We also introduce the new Identifiers.org service that is built upon the informati

207 common and rare disease concepts with stable identifiers organized by disease etiology.

208 , it is not a good choice for use as a tumor identifier outside of the immune system.

209 This service uses the identifier patterns defined in the Identifiers.org Regis

210 o different crystal forms (Protein Data Bank identifiers [PDB ID], 3LQ6 and 3LQE).

211 Unique personal identifiers permitted unambiguous data linkage and compl

212 Specifically, we propose actions that identifier practitioners (database providers) should tak

213 areness about how to avoid and manage common identifier problems, especially those related to persist

214 e is a tool that allows users to map protein identifiers, protein sequences and gene identifiers acro

215 reference them in publications by the unique identifier provided by RDMLdb.

216 has evolved in terms of the structure of the identifiers provided, the software infrastructure, the n

217 various attributes including gene names and identifiers, PubMed ID and evidence type.

218 ProteomeXchange Consortium with the dataset identifier PXD000456.

219 data are available via ProteomeXchange with identifier PXD000658.

220 d are available via ProteomeXchange with the identifier PXD000759.

221 le through ProteomeXchange with the data set identifier PXD000906.

222 data are available via ProteomeXchange with identifier PXD001062.

223 data were deposited in the ProteomeXchange (identifier PXD001075).

224 been deposited with the ProteomeXchange with identifier PXD001333.

225 data are available via ProteomeXchange with identifier PXD001555.

226 Data are available via ProteomeXchange with identifier PXD001845.

227 (data are available via ProteomeXchange with identifier PXD002762).

228 s been deposited to the ProteomeXchange with identifier PXD003024.

229 data are available via ProteomeXchange with identifier PXD004219.

230 Data are available via ProteomeXchange with identifier PXD004529.

231 Data are available via ProteomeXchange with identifier PXD004749.

232 hiometry (available via ProteomeXchange with identifier PXD005903) and set the stage for further biol

233 Data are available via ProteomeXchange with identifier PXD005987.

234 Data are available via ProteomeXchange with identifier PXD006042.

235 Data are available via ProteomeXchange with identifier PXD006131.

236 Data are available via ProteomeXchange with identifiers PXD007236, PXD007267, and PXD007268.

237 outline 10 lessons we have learned about the identifier qualities and best practices that facilitate

238 ombined with statistical compression of read identifiers, quality scores, alignment information and s

239 ters, a shift toward using accession.version identifiers rather than GI numbers, a wizard for submitt

240 uced safety with greater crowd density, high identifiers reported increased safety with greater crowd

241 Whereas low identifiers reported reduced safety with greater crowd d

242 analysis tools, such as the Resistance Gene Identifier (RGI) for resistome prediction from raw genom

243 ney stones and associated RadLex(R) Playbook identifiers (RPIDs) were retrospectively identified.

244 We discuss here the use of Research Resource Identifiers (RRIDs) as one tool to help resolve this tri

245 hors were asked to include Research Resource Identifiers (RRIDs) in their articles prior to publicati

246 t currently included in the Secondary Source Identifier [si] field for MEDLINE citations.

247 moving toward shared data formats and linked identifiers, significant problems persist in semantic da

248 We propose the SNP Interaction Pattern Identifier (SIPI), which tests 45 biologically meaningfu

249 f "aging" and results in loss of the o-alkyl identifier specific to each nerve agent.

250 For chemistry, unique identifiers, structure representations, and property des

251 on to supplement for older cohorts that have identifiers such as Social Security numbers.

252 Many lists containing biological identifiers, such as gene lists, have been generated in

253 This review explores the use of other identifiers, such as specimen codes and GenBank accessio

254 The data are searchable using standard identifiers, such as UniProt, ChEBI and GO IDs, protein,

255 spectra of these spins are a unique chemical identifier, suggesting the possibility, in combination w

256 From 31 Arabidopsis gene identifiers tagged to robust shoot Ca concentration phen

257 These OTUs can serve as specific identifier taxa for these sources in environmental water

258 Unique identifiers: TAXUS IV: NCT00292474; TAXUS V: NCT00301522

259 lumina sequencing with unique cDNA molecular identifier technology to achieve deep and precisely norm

260 d an iterative system where a unique DNA tag identifier that encoded the event was appended to each n

261 this end, we have defined a simple five-item identifier that uniquely and unambiguously defines each

262 a robust approach based on unique molecular identifiers that allows profiling Ag receptors for sever

263 ding the data analysis with unique molecular identifiers that are critical for accurate counting of s

264 ther complicated by the variety of names and identifiers that exist in the literature for them.

265 Each patient has a unique ten-digit identifier, the Community Health Index, enabling us to l

266 eam applications that require converting the identifiers themselves, there are many resources availab

267 which creates SDM primers adding a specific identifier: through additional silent mutations a restri

268 RSC allocates a unique identifier to strains recommended for use in diagnosis a

269 Here, using key identifiers to characterize neural arrangements, we demo

270 to allow searching for interactions by drug identifiers to complement existing gene-based search fun

271 with normalization based on unique molecular identifiers to explore the long-term dynamics of T cell

272 rsioned with full histories and carry unique identifiers to facilitate reproducible research.

273 fication allowing the assignment of taxonomy identifiers to individual gene mentions.

274 wever, the inability of common spectroscopic identifiers to register the events of transmembrane tran

275 en pathway is defined with a standard set of identifiers to support linking to several other biologic

276 ling approach, SID (Saccharomyces cerevisiae IDentifier), to identify the strains present in complex

277 Translation System, which allows metabolite identifier translation between >200 common biochemical d

278 nd a cross-organism search; and a metabolite identifier translation service.

279 Unique identifier: U1111-1118-8098.

280 "Safe-SeqS"), are (i) assignment of a unique identifier (UID) to each template molecule, (ii) amplifi

281 ript molecule counting with unique molecular identifiers (UMI) that correct PCR bias.

282 Unique Molecular Identifiers (UMIs) are random oligonucleotide barcodes t

283 omplex sgRNA libraries with unique molecular identifiers (UMIs) that allowed for screening of clonall

284 We added unique molecular identifiers (UMIs) to all samples, to account for amplif

285 enBank staff assign unique accession.version identifiers upon data receipt.

286 ce allows the generation of Uniform Resource Identifiers (URIs) to uniquely identify any record in a

287 representing entities using Unified Resource Identifiers (URIs), and sharing information using Resour

288 The user supplies input in the form of identifiers used in relevant data resources to refer to

289 iers.org Registry to generate a plurality of identifier variants, which can then be used to match sou

290 ference table of synonymous gene and protein identifiers; (vi) proteome-wide indexing with GO terms;

291 A Google-based name identifier was used to assign the gender of authors.

292 Identifiers were matched with the Social Security Death

293 Physician identifiers were unavailable, and results may not genera

294 Unique anonymous radiologist identifiers were used to link the discrepancies to radio

295 Patient identifiers were used to link these data to the national

296 S and MS provides additional unique compound identifiers with detection of features based on retentio

297 ants, which can then be used to match source identifiers with target identifiers.

298 ce is thought to reflect a group-distinctive identifier, with shared calls reflecting and strengtheni

299 terature contains millions of microbial gene identifiers within the full text and tables, but these a

300 ess to finer geography, such as census tract identifiers, would enable richer analyses-for example, e