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1 t protein was restored when SUMO-1 was fused in-frame.
2 lice site, resulting in the production of an in-frame, 11-aa secretory tail at the end of the D7 doma
4 sequences but were separated from them by an in-frame "2A-like" sequence element that specifies a cot
5 assium channel Kv4.3-encoding gene KCND3: an in-frame 3-nucleotide deletion c.679_681delTTC p.F227del
7 ersions in exons 5 and 8, respectively), one in-frame 5-11 microindel in exon 7 and a 410-bp deletion
8 rsions in PRKCA mRNAs (out-of-frame 61 bp or in-frame 66 bp long), and is preferentially included in
9 ine 95 to histidine (P95H) and a P95-to-R102 in-frame 8-amino-acid deletion caused significant change
10 an intragenic insertion, which results in an in-frame 90-bp insertion in the transcript and a predict
11 in reorganization within the gorge, freezing-in-frame a conformation distinct from an unbound state o
13 d these enzymes are encoded by genes with an in-frame amber codon that is translated as pyrrolysine.
14 leaves a short DNA footprint that can create in-frame and frameshift insertions in coding sequences.
16 57BL/6-Klk4 (+/LacZ) mice have LacZ inserted in frame at the Klk4 translation initiation site so that
17 lation initiation codon and rely on a second in-frame ATG codon to produce an enzymatically active is
18 as suggested by the significant bias against in-frame ATGs specifically found at the beginning of the
23 ized in the nucleus, and mutation of the two in-frame AUGs has no effect on the activation of IRF3 an
24 NS1 protein containing mutations of the two in-frame AUGs results in both the absence of truncated N
27 ed transcript lacking exons 4-7, encoding an in-frame BRCA2 protein with an internal deletion of 105
28 arrangements in human ALCL are predominantly in-frame, but often aberrant, with clonal TCRalpha but n
33 med PtaA for "periplasmic transaminase A" An in-frame-deleted ptaA mutant selectively lacked the alph
35 es, the mutation identified was a novel 3-bp in-frame deletion (c.20_22del) that results in deletion
39 ted sequencing, here we identify a recurrent in-frame deletion (VAV1 Delta778-786) generated by a foc
40 oth the rare truncating mutations and common in-frame deletion alteration of FAM190A may contribute t
41 DNA microarray analysis of biofilms of pdeB (in-frame deletion and EAL) mutant cells revealed that ex
42 = 8.3 x 10(-55), beta = -0.90 s.d.), a rare in-frame deletion in FCGR2B abolishing IgG binding to th
44 of BAP1 that disrupt the CUBI and notably an in-frame deletion in the CTD that inhibits its interacti
46 We show that a mutant NLGN4 containing an in-frame deletion is unable to localize correctly to the
47 d pneumonic plague, we characterized an msbB in-frame deletion mutant incapable of producing an acylt
49 n act gene regulation, we constructed a gidA in-frame deletion mutant of Escherichia coli GM28 (dam(+
56 cent studies show that a naturally occurring in-frame deletion mutation (Del-L955) of NaV1.7 channel,
58 e and FBM, our data provide an example of an in-frame deletion mutation exerting a 'polar' effect on
59 ronchiseptica strain RBX9, which contains an in-frame deletion mutation in fhaB, encoding filamentous
61 cerebellar heterotopia, caused by an unusual in-frame deletion mutation in the meckelin C-terminus at
64 strated that seven nontruncating missense or in-frame deletion mutations (L986F, delF1289, R1648C, F1
67 e role of these genes in pathogenesis, large in-frame deletion mutations of bcaA and bcaB were constr
69 ion in the patched2 gene that resulted in an in-frame deletion of 19 amino acids that are predicted t
70 entified four mutations (three missense, one in-frame deletion of 30 base pairs) in six primary tumou
72 predicted menin Delta(184-218) mutant has an in-frame deletion of 35 amino acids but is otherwise of
73 assays, and resulted in exon skipping and an in-frame deletion of 40 amino acids in primary human fib
74 spliced, truncated GLI1 (tGLI1) that has an in-frame deletion of 41 codons spanning the entire exon
75 Col6a3 mRNA and a mutant transcript with an in-frame deletion of 54 bp of triple-helical coding sequ
76 ely spliced F5 transcript that results in an in-frame deletion of 702 amino acids of the large activa
79 al hypocalciuric hypercalcemia type 2 had an in-frame deletion of a conserved Galpha11 isoleucine (Il
86 hat a splice isoform of erbB2, containing an in-frame deletion of exon 16 (herein referred to as ErbB
88 esponding to a full-length sequence with the in-frame deletion of pore-S6 domains, predicted by const
92 and the T9SS, mutants were constructed with in-frame deletion of the CTD and deletion of porU, a C-t
94 We also generated an LPL construct with an in-frame deletion of the N-terminal catalytic domain (re
99 ng a human variant (Delta4-13) containing an in-frame deletion which removed exons 4 through 13, enco
100 plice donor site in exon 11, and leads to an in-frame deletion within the prelamin A mRNA and the pro
101 N (substitution), lasR (deletion), and rpoD (in-frame deletion), all encoding regulators of large gen
102 Each of these homozygous variants (a large in-frame deletion, a frameshift deletion, and a missense
103 e-nucleotide deletions, one three-nucleotide in-frame deletion, and one premature stop codon were als
109 e was replaced by genomes harboring internal in-frame deletions affecting the L- or capsid-coding reg
110 600E harbored somatic mutations in MAP2K1 (6 in-frame deletions and 1 missense mutation) that induced
112 ) of DIPGs, including missense mutations and in-frame deletions and insertions not previously describ
116 o test strains with transposon insertions or in-frame deletions in biofilm-associated loci: ahrC, arg
119 ilis epsH-K genes into Escherichia coli with in-frame deletions in the PNAG biosynthetic genes pgaA-D
123 reduced by 50% have been proven for specific in-frame deletions of 1 or several amino acids, probably
125 A transcripts in 40% of cancers also contain in-frame deletions of evolutionarily conserved exons.
130 r, many tumors exhibit missense mutations or in-frame deletions or insertions, often outside the func
132 ts with Becker muscular dystrophy harbouring in-frame deletions relevant to on-going or planned exon
139 uded seven unique missense variants and nine in-frame deletions/duplications of which 12 were novel.
140 ing transcripts, and approximately 20-30% of in-frame Delta9,10 transcripts predicted to encode a BRC
141 Although most children showed a decrease in frame dependency over the 4 years of the study, almos
142 This work indicates that knowledge of how in-frame disease mutations alter specific interactions i
144 the microscope over the imaged area, warping in frames due to changes in contact angle and varying re
146 cker muscular dystrophy, typically caused by in-frame dystrophin deletions that allow the production
147 probing of the putative linker segment using in-frame enhanced green fluorescent protein (EGFP) inser
148 man CVID-affected family with a heterozygous in-frame exon 9 skipping mutation (c.835+2T>G) and in a
149 tory domain, induces partial skipping of the in-frame exon and nuclear accumulation of beta-catenin.
150 (Rb) tumor suppressor protein (RbN) harbors in-frame exon deletions in partially penetrant hereditar
151 requent structural rearrangements, including in-frame exonic alterations within EGFR and SIK2 kinases
152 ess the specificities of these dipsticks, an in-frame F1-deficient mutant of CO92 (Deltacaf) was gene
156 tion with ASOs or siRNA was achieved via the in-frame fusion of either Saccharomyces cerevisiae GAL4
167 genome sequencing strategy and identified an in-frame germline compound heterozygous deletion, p.[Gln
169 agglutinin (IE3-HA) virus by insertion of an in-frame HA epitope sequence allowed detection of the IE
170 In particular, two individuals shared an in-frame heterozygous deletion of three nucleotides (c.4
180 ty of mutations are either missense or small in-frame in-del mutations and disease severity often rel
182 ring variants defined as missense plus LoFs, in frame indels and stop-loss variants (n = 13 014, OR =
183 ypes (in-frame [missense point mutations and in-frame indels] versus truncating [nonsense mutations a
184 show that a naturally occurring, downstream, in-frame initiation codon is used to make a dCREB2 prote
185 , instead, force translation from downstream in-frame initiation codons, yielding amino-terminally tr
188 ealed a heterozygous, exon 37, six-base pair in-frame insertion mutation in the affected patient and
189 site variant (c.636+1G>A) that results in an in-frame insertion of 45 nucleotides and a missense vari
193 lies, we identified heterozygous missense or in-frame insertion/deletion mutations in C1R (15 familie
194 utations were heterozygous missense or small in-frame insertion/deletion mutations occurring within o
196 menable to structure-function analyses using in-frame insertions and deletions as presented herein.
197 rame mutations (missense point mutations and in-frame insertions and deletions) are enriched on the i
201 Accordingly, repression is relieved by small in-frame insertions before this secondary structure, or
202 Single-nucleotide substitutions and small in-frame insertions or deletions identified in human bre
203 or specific driver events, including hotspot in-frame insertions that target KBTBD4 and 'enhancer hij
204 mutated bMSTN gene (bMSTN-mut) was inserted in frame into the pEF1a-IRES-DsRed-Express2 vector and t
205 long with two SV5-Pk epitope tags engineered in-frame into the third exon, immediately C-terminal to
206 table fusion candidates, we focused on three in-frame kinase fusion transcripts that retain a kinase
207 nt anti-ERbeta antibodies, we showed that an in-frame ligand binding domain and C terminus were prese
209 essive versus dominant) and molecular types (in-frame [missense point mutations and in-frame indels]
210 n an experimental parameter regime for which in-frame motion prevents SPT and tight confinement of fa
213 s from the mutated transcript can produce an in-frame mRNA and a truncated, but still functional, pro
216 that the presence of at least 1 missense or in-frame mutation is associated with adult onset and slo
218 spot" regions would introduce biases towards in-frame mutations and would compromise the reproducibil
222 the US1 gene that encodes ICP22, produces an in-frame, N-terminally truncated form of ICP22, known as
223 suggest that this classification is helpful in framing new diagnostic and therapeutic approaches to
224 in which a protein encoded by a gene with an in-frame nonsense codon at an essential lysine can be ex
225 ible gene-targeting system by introducing an in-frame nonsense mutation into the coding sequence of C
226 oding a putative TBC1D20-ZFN protein with an in-frame p.[H140_Y143del] deletion within the highly con
227 ulting in difficulty in placing the patients in frame, patient's inability or unwillingness to tolera
234 individual V(H)s have different fractions of in-frame rearrangements (IF fractions) ranging from 10 t
235 x allosteric mechanisms have proven valuable in framing research on the mechanism of etomidate action
236 inants occurring at gene junctions presented in-frame sequence duplications, whereas most intragenic
238 these gene structure rearrangements resulted in frame-shift mutations and premature termination codon
239 s in replicating eukaryotic cells, resulting in frame-shifting insertion/deletion (indel) mutations a
240 rom mice and humans, representing over 4,600 in-frame single-cell-derived TCRalphabeta sequence pairs
245 Rabies virus (RABV) P gene mRNA encodes five in-frame start codons, resulting in expression of full-l
246 ucleotides of mRNA sequence that contains an in-frame stop codon caused by a downstream G --> A(2,832
248 tivated by promoter defects, introduction of in-frame stop codon, or the lack of a polyadenylation si
249 am of the LRR-encoding exons and contains an in-frame stop codon, the alternative transcript is predi
252 with genomic (main) ORF1 by converting three in-frame stop codons to nonstop codons, a uORF-ORF1 fusi
253 The translation of non-stop mRNA (which lack in-frame stop codons) represents a significant quality c
254 rosophila lebanonensis, but it does not have in-frame stop codons, suggesting the exon's functional d
256 automated genome engineering, we introduced in-frame TAG codons into 22 essential genes, linking the
257 Pyl-decoding bacteria (~20% of ORFs contain in-frame TAGs) regulate Pyl-tRNA(Pyl) formation and tran
262 cogenic chromosomal translocations that fuse in-frame the tyrosine kinase coding domains of fibroblas
264 at expresses human calreticulin (hCRT) fused in frame to MmuPV1 E6 (mE6) and mE7 early proteins and r
265 d driven by the hly promoter (h30) or linked in frame to the ActA N-terminal 100 amino acids and driv
266 l region of the glutamate-rich protein fused in frame to the C-terminal region of merozoite surface p
267 ncoded green fluorescent protein (GFP) fused in frame to the internal capsid scaffold and maturation
268 m30 vaccine candidates expressing r30 linked in frame to the L. monocytogenes listeriolysin O signal
272 ons fuse genes that are predicted to produce in-frame transcripts of SIRPG-WWOX, SMOC2-PROX1, and PIE
274 frame in the Wnt16a mRNA to an alternative, in-frame translation initiation site, resulting in the p
276 set of BAC-expressing neurons results in the in-frame translation of the reporter protein hence the s
278 xon skipping by testing whether an internal, in-frame truncation of a transmembrane protein gamma-sar
281 roteinogenic amino acid encoded by a recoded in-frame UGA codon that does not operate as the canonica
282 homolog from Metridium senile that has four in-frame UGA codons and two nearly identical SECIS eleme
283 ins occurs by translational recoding whereby in-frame UGA codons are redefined to encode the selenium
284 tabolic (75)Se labeling showed that all four in-frame UGA codons supported Sec insertion and that bot
287 date genes, but this approach often produces in-frame variants that retain functionality, which can o
289 as nonproductive VJ, sterile transcripts, or in-frame VJ whose products may not associate with the H
290 mplementary DNA from renal tissue and cloned in frame with a CPD (YARKARRQARR) at the amino-terminal
291 he mixed lineage leukemia (MLL) gene fuse it in frame with multiple partner genes creating novel fusi
292 molog of the molecular chaperone DNAJ, fused in frame with PRKACA, the catalytic domain of protein ki
294 sting of the puromycin resistance gene fused in frame with the enhanced green fluorescent protein (EG
295 repeat and exogenous insert were positioned in frame with the native protein-encoding sequences but
296 of a gene sequence encoding a V5 epitope tag in frame with the TEV protease site immediately after gK
297 ould produce transcripts bringing these ORFs in frame with the upstream polyprotein, thus leading to
298 heterologous proteins (ABL1, Rev, PKIA, APC) in-frame with AF10 are sufficient to immortalize murine
300 d upon either fusion of the reporter protein in frame within nonstructural protein 3 (nsP3) or insert
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