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1 high levels as a result of a third mutation (insertion sequence).
2 when there are fewer than five copies of the insertion sequence.
3 with olefins via a C-H activation, migratory insertion sequence.
4 ix domain, and a transmembrane and cytosolic insertion sequence.
5 or ammonia catabolism, iron acquisition, and insertion sequences.
6 polymorphisms, and a unique distribution of insertion sequences.
7 racketed by the homologous ISV-A1 and ISV-A2 insertion sequences.
8 S1601 contains portions of three independent insertion sequences.
9 tive composite transposon bracketed by IS600 insertion sequences.
10 deletion via recombination between flanking insertion sequences.
11 harbors at least 12 copies of five distinct insertion sequences.
12 ation of the composite transposon's flanking insertion sequences.
13 ral mechanism for the formation of miniature insertion sequences.
14 n of all genomic rearrangements that involve insertion sequences.
15 ene, an intein (Cbu.DnaB) within dnaB and 29 insertion sequences.
16 re recognized: 13 capsule synthesis genes, 4 insertion sequences, 1 truncated biosynthesis gene, and
17 h several genomic rearrangements mediated by insertion sequences, 12 cryptic prophages, 372 pseudogen
18 time PCR assay with three targets, including insertion sequence 481 (IS481), IS1001, and an IS1001-li
19 in the United States, most laboratories use insertion sequence 481 (IS481), which is not specific fo
20 ary 1, 2001, and December 31, 2003, that had insertion sequence 6110 (IS6110) restriction fragment le
22 tative virulence genes, genomic islands, and insertion sequences across a collection of 33 strains is
25 ogenic bacterial plasmid "mobilome" includes insertion sequence and other transposable elements that
26 on is unusually G-C rich, and it has unusual insertion sequences and a minimal dependence on the EBS2
27 ing, sap typing, and the presence/absence of insertion sequences and a type I restriction modificatio
29 ither singly or in large multiple arrays, to insertion sequences and gene duplications of one kilobas
30 ools such as Optimized Annotation System for Insertion Sequences and IScan currently identify IS elem
31 plicated by the presence of repeat elements, insertion sequences and other similar factors that contr
32 strain chi7122 include complete and partial insertion sequences and phage-related DNA sequences, som
33 Divergent features included already reported insertion sequences and ragB, as well as additional hypo
35 omosome of each recipient, where it acquired insertion sequences and underwent deletions and rearrang
37 ransposon mutant library that is amenable to insertion sequencing and introduced this mutant pool int
38 olerae survival, and by combining transposon-insertion sequencing and transcriptomic data sets, we al
39 es-specific hypothetical genes, transposons, insertion sequences, and integrases and were located adj
41 d contains an unusual t-RNA island, numerous insertion sequences, and large repeated elements, includ
43 ae are spread by plasmid-mediated integrons, insertion sequences, and transposons, some of which are
44 ke other obligate intracellular bacteria, 32 insertion sequences are found dispersed in the chromosom
46 mino acids of the peptide, also known as the insertion sequence, are found to be essential in reducin
49 TA proteins possess a hydrophobic membrane insertion sequence at their C-terminus such that it can
50 competes with endogenous GPX1 selenocysteine insertion sequence binding activity in COS-1 cytosol ext
51 region of selenoprotein mRNAs as well as Sec insertion sequence binding protein 2, Sec-tRNA(Sec), and
52 by a multiprotein complex that includes Sec insertion sequence-binding protein 2 (SECISBP2; also kno
53 ein B as the first eukaryotic selenocysteine insertion sequence-binding protein opens the way to the
54 rs to play a central role in the exchange of insertion sequences, but not the exchange of high-identi
55 ns of C. reinhardtii have short extension or insertion sequences, but overall the large subunit prote
57 present a resource and analysis of 2,363 new insertion sequences corresponding to 720 genomic loci.
61 ruption in the A genome include retroelement insertions, sequence deletions, and mutations causing in
62 uence similarities to known genes, including insertion sequences, determinants of regulatory proteins
63 g a size greater than 30 kb, the presence of insertion sequences, distinct segmentation of K-12 and J
66 eatures of the cDNA include a selenocysteine insertion sequence element approximately 4.8 kb 3' to th
70 g protein that recognizes the selenocysteine insertion sequence element in human cellular glutathione
71 g from stop to Sec involves a cis-acting Sec insertion sequence element in the 3' untranslated region
72 ) and its insertion was dependent on the Sec insertion sequence element in the 3'UTR of TR1 mRNA.
73 rs713041 is located near the selenocysteine insertion sequence element in the GPX4 3' untranslated r
74 hia coli K-12 strain MG1655 contained an IS1 insertion sequence element in the regulatory region of t
76 lis: (i) the transposition of the endogenous insertion sequence element IS1126 and (ii) the modulatio
77 determined that the endogenous P. gingivalis insertion sequence element IS1126 is capable of transpos
80 depends on the nature of the selenocysteine insertion sequence element located in the 3' UTR of sele
81 the presence of a functional selenocysteine insertion sequence element that is highly active but onl
82 gly, however, we also observed that a 1.8-kb insertion sequence element was positioned between ccmB a
83 expressed when the Drosophila selenocysteine insertion sequence element was used, whereas the corresp
90 parent strain using all known P. gingivalis insertion sequence elements as probes suggested that no
91 idence that homologous recombination between insertion sequence elements can be a primary determinant
92 A-binding protein B binds the selenocysteine insertion sequence elements from the GPX1 and type I iod
95 conversion and several other loci containing insertion sequence elements or phage-related gene insert
96 gingivalis was a concerted up-regulation of insertion sequence elements related to IS1 transposases.
97 se genes, conjugative functions and multiple insertion sequence elements suggests that the PAI, or se
100 em-loop structures resembling selenocysteine insertion sequence elements were identified in the 3'-un
102 frame is homologous to a family of putative insertion sequence elements, although our evidence shows
103 vel program that searches for selenocysteine insertion sequence elements, followed by selenoprotein g
104 lication and maintenance regions, with seven insertion sequence elements, located mostly at the bound
105 PXO99A contains numerous copies of diverse insertion sequence elements, members of which are associ
110 ariable deletion events between the flanking insertion-sequence elements, all resulting in eliminatio
111 including phage-derived genes, plasmids, and insertion-sequence elements, highlighting its dynamic na
112 o high-throughput DNA sequencing (transposon-insertion sequencing) enables simultaneous and genome-wi
113 analysis of BiXyn10A demonstrated that such insertion sequences encode a new family of carbohydrate-
115 g decay through loss of functional genes and insertion sequence expansion, often indicative of adapta
116 ar homologous recombination occurred between insertion sequences following an initial transposition e
118 cise, reading frame-restoring excision of an insertion sequence from the coding region of expR, a gen
121 bile genetic elements such as transposons or insertion sequences, i.e. they possess direct repeats at
124 single event, the transposition of an IS6110 insertion sequence in one of the strains, accounted for
125 designated ISPpu12, had the structure of an insertion sequence in that it was bordered by 24-bp near
129 ility of internal deletion variants of other insertion sequences in these isolates suggests that this
130 om multiple inversions of genome segments at insertion sequences, in a manner consistent with present
131 the sea urchin Tsp family and Drosophila SGM insertion sequences; in addition, they possess regions o
132 Recent studies revealed that a hydrophobic insertion sequence (INS) in these LAADs also interacts w
134 ersed repetitive elements (SINEs), and of an insertion sequence (InsIpCHSD) found in the neighborhood
135 onal events involved the transposition of an insertion sequence into a narrow window of a single gene
136 Molecular fingerprinting with the IS6110 insertion sequence is useful for tracking transmission o
138 addition to homologs of two other H. pylori insertion sequence (IS) element genes, orfA, which encod
139 quence studied is derived from a Roseiflexus insertion sequence (IS) element where the resulting tran
140 Streptomyces scabies 84.34 identified a new insertion sequence (IS) element, IS1629, with homology t
141 up (SFG) R. peacockii, we identified a novel insertion sequence (IS) element, ISRpe1, disrupting the
142 C-1, showed that it undergoes high-frequency insertion sequence (IS) element-mediated insertions and
143 ted ORFs are interspersed among three intact insertion sequence (IS) elements (IS100 and two new IS e
144 regions of Tn5385 are linked by a series of insertion sequence (IS) elements (IS256, IS257, and IS12
145 ed many of the lines for mutations involving insertion sequence (IS) elements and identified two gene
146 her elements such as transposons, integrons, insertion sequence (IS) elements and the 'new' ISCR (IS
150 ly syntenous, recombination between abundant insertion sequence (IS) elements has resulted in genome
151 he 16 kb region in P. furiosus is flanked by insertion sequence (IS) elements with inverted and direc
152 espite its small size, the genome harbors 73 insertion sequence (IS) elements, almost all of which ar
153 ltiple members of two classes of Francisella insertion sequence (IS) elements, ISFtu1 and ISFtu2, and
154 e plasmid harbors a 16-kb region, flanked by insertion sequence (IS) elements, that encodes the restr
155 , we present genetic maps of recently active Insertion Sequence (IS) elements, the simplest form of M
160 of these were related to known and putative insertion sequence (IS) elements; no known bacterial pla
163 1998, for which the W family was defined by insertion sequence (IS) IS6110 DNA fingerprinting, polym
165 a highly diagnostic set of markers based on insertion sequence (IS) site polymorphism and genomic re
167 G1655, resulting from a dramatic increase in insertion sequence (IS) transposition, especially IS150.
169 ssibility, we have studied the occurrence of insertion sequence (IS)-like elements in P. gingivalis W
170 ycobacterium tuberculosis isolates underwent insertion sequence (IS)6110 restriction-fragment-length
177 he isolates resulted from the presence of an insertion sequence, IS1301, in the intergenic region (IG
178 the ser2 gene cluster are flanked by a novel insertion sequence (IS1601) oriented as direct repeats.
179 three of these isolates, a newly discovered insertion sequence, IS1630 (of the IS30 class), was loca
182 se-developed PCR test targeting the repeated insertion sequence IS481 for the detection of Bordetella
197 tial mobile units (PMUs), which contain tra5 insertion sequences (ISs) and genes for specialized sigm
198 Analyses of complete genomes indicate that insertion sequences (ISs) are abundant and widespread in
203 nd B. holmesii was developed using multicopy insertion sequences (ISs) in combination with the pertus
207 A-2-3B'a(2-13) each host several families of insertion sequences (ISSoc families) at various copy num
209 Tandem amplification occurs via the flanking insertion sequences, leading to increased toxin producti
211 anatomical images, transgenic constructs and insertions, sequence-level gene models and molecular cla
212 owever, this prtP gene was interrupted by an insertion sequence-like element which we designated IS19
217 r bacterial NusG proteins contain a variable insertion sequence of approximately 70 residues in the c
218 performed DNA fingerprinting with the IS6110 insertion sequence of the organisms isolated from patien
219 this hypothesis, a mutation in the membrane insertion sequence of the v-SNARE synaptobrevin/vesicle-
221 cur through homologous recombination between insertion sequences on both sides of a duplicated region
222 i are bracketed by or are in the vicinity of insertion sequences or long clusters of tandem repeats (
223 me is unusual in that there are virtually no insertion sequences or phage-associated sequences and ve
228 lation, but loss of a downstream pyrrolysine insertion sequence (PYLIS) significantly increased the U
229 a dynamic 2,571,010-bp genome containing 91 insertion sequences representing 12 families and organiz
230 archy of selenoprotein synthesis are the Sec insertion sequence RNA-binding proteins, SBP2 and nucleo
232 cess are the mRNA binding protein of the Sec insertion sequence, SBP2, and the specialized elongation
233 a 3 untranslated region (UTR) selenocysteine insertion sequence (SECIS) and the SECIS-binding protein
234 ing event is specified by the selenocysteine insertion sequence (SECIS) element and requires the sele
236 c in mammalian selenoproteins requires a Sec insertion sequence (SECIS) element in the 3' untranslate
237 codon as selenocysteine (Sec) requires a Sec insertion sequence (SECIS) element in the 3' untranslate
238 re a set of highly specific factors: the Sec insertion sequence (SECIS) element in the 3' untranslate
239 rporation into selenoproteins requires a Sec Insertion Sequence (SECIS) element in the 3' untranslate
241 ec-dedicated elongation factor SelB to a Sec insertion sequence (SECIS) element in the selenoprotein-
242 ated at UGA codons in mRNAs possessing a Sec insertion sequence (SECIS) element in their 3'-untransla
243 egion of this gene contains a selenocysteine insertion sequence (SECIS) element that deviates at one
244 two copies of tRNA-Sec and a selenocysteine insertion sequence (SECIS) element which were lost in pl
245 aryotes, incorporation of Sec requires a Sec insertion sequence (SECIS) element, a stem-loop structur
246 of UGA as Sec depends on the selenocysteine insertion sequence (SECIS) element, a stem-loop structur
247 a common stem-loop structure, selenocysteine insertion sequence (SECIS) element, that is necessary fo
249 ependent on the presence of a selenocysteine insertion sequence (SECIS) element, which recruits the s
257 ppresses UGA codons that are upstream of Sec insertion sequence (SECIS) elements bound by SECIS-bindi
259 ly structured 3' UTR contains selenocysteine insertion sequence (SECIS) elements that are required fo
260 selenoprotein genes contained selenocysteine insertion sequence (SECIS) elements that were similar, b
261 y identified several genes with multiple Sec insertion sequence (SECIS) elements, one of which was a
262 for evolutionarily conserved selenocysteine insertion sequence (SECIS) elements, which are RNA struc
264 gency of the Escherichia coli selenocysteine insertion sequence (SECIS) requirements, libraries of SE
265 sertion requires a cis-acting selenocysteine insertion sequence (SECIS) usually located in the 3'UTR
266 untranslated region, termed a selenocysteine insertion sequence (SECIS), and SECIS-binding protein 2
267 ires the TGA opal codon and a downstream Sec insertion sequence (SECIS), which can be partially rando
269 tructure and stability of the selenocysteine insertion sequences (SECIS) of human glutathione peroxid
271 e subspecies and is bracketed by remnants of insertion sequences, suggesting a multistep process in t
273 loci differ from wlbpe in that they lack the insertion sequence that defines the right-hand terminus
275 kynyliodonium salt/alkylidenecarbene/1,5 C-H insertion sequence that sets the pivotal quaternary cent
276 Downstream from the termination codon is an insertion sequence that was homologous to the ISVs1 elem
278 pproximately 5% of the genome is composed of insertion sequences that may contribute to genome rearra
279 ntify the chromosomal position of repetitive insertion sequences that typically flank horizontally ac
280 xpression levels of endogenous and exogenous insertion sequences that were 2 orders of magnitude high
281 uctural features, pathognomonic of a regular insertion sequence, this element was designated IS1414.
287 previously developed the Transposon Directed Insertion Sequencing (TraDIS) protocol for this purpose,
289 e analysis revealed the presence of multiple insertion sequences upstream and downstream of the aerob
290 ion studies of Acinetobacter baylyi ADP1, an insertion sequence was evident in approximately 2% of th
294 a-D-glucosidase gene, with a novel PA14-like insertion sequence, was identified two genes downstream
297 ed OASIS, or Optimized Annotation System for Insertion Sequences, which automatically annotates ISs w
299 in is distinctive in its large complement of insertion sequences, with several genomic rearrangements
300 ces, a Y chromosome-specific sequence, or an insertion sequence within the glutathione S-transferase
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