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1 diverse set of genetic changes (mismatches, insertions, deletions).
2 single-nucleotide polymorphisms and an 11-bp insertion-deletion.
3 deletion (Del Ex3-4) is likely to be a large insertion-deletion.
4 matic mutation, isotype switching, and codon insertion/deletion.
5 sign integer weights for match, mismatch and insertion/deletion.
6 rising multiple nearby base substitutions or insertion-deletions.
7 small +1 insertion/deletions than larger +4 insertion/deletions.
8 onventional PCRs directed at 11 SNPs and two insertion/deletions.
9 leotide variants and enable scoring of short insertions-deletions.
10 se substitutions, strand slippage, and small insertions/deletions.
11 mal rearrangement of syntenic blocks and DNA insertions/deletions.
12 el to search for instances of the motif with insertions/deletions.
14 20 missense/nonsense mutations as well as 60 insertions/deletions affecting 73 different genes ( appr
15 n important role for rs2004640 and the CGGGG insertion/deletion, along with type I IFNs, in regulatin
16 ated approach combining mutation profile and insertion/deletion analyses, we identified nine novel li
17 nome-wide copy number analysis identified 51 insertion deletions and 440 copy number variants > 1 kb.
18 copy number variation (CNV) which comprises insertion, deletion and duplication of genomic sequence,
21 inear space and supports quasi-constant time insertion, deletion and movement (i.e. updates) of atoms
22 nables researchers to additionally determine insertion, deletion and recombination events as well as
23 tain robust maximum-likelihood estimates for insertion, deletion and substitution error rates (4.9%,
25 accurate and efficient multiplexing of small insertion-deletions and single-nucleotide variants chara
26 are prone to misalignment and hence to both insertion/deletion and endoduplication events, and that
27 homeologous regions with only a single gene insertion/deletion and local tandem duplications differi
31 ur different missense variants, one in-frame insertion/deletion and two conserved splice site variant
32 nd recruited Mlh1-Pms1 on +1, +2, +3, and +4 insertion/deletions and CC, AA, and possibly GG mispairs
33 mostly the mmu-let-7 family display internal insertion/deletions and substitutions when compared to p
34 the effects of multiple mutations, including insertions, deletions and alternative splicing events, i
36 accumulates unbalanced rearrangements (novel insertions, deletions and duplications) more rapidly.
38 nges including gene and genome duplications, insertions, deletions and gene order rearrangements.
39 ta, such as single nucleotide polymorphisms, insertions, deletions and genome-wide association studie
41 ation on an intermediate scale--particularly insertions, deletions and inversions affecting from a fe
42 Structural variants, including duplications, insertions, deletions and inversions of large blocks of
44 l variation, including copy number variants, insertions, deletions and other structural variants (SVs
47 e major cartilage collagen gene COL2A1, with insertions, deletions and rearrangements identified in 3
48 storing DNA polymorphism data such as SNPs, insertions, deletions and structural variants, together
49 op SEQuel, a tool that corrects errors (i.e. insertions, deletions and substitution errors) in the as
50 ng the edit-distance (i.e. minimum number of insertions, deletions and substitutions) between short D
51 genome assembly, and make over 800 changes (insertions, deletions and substitutions) to refine this
52 and knock-ins, as well as single-nucleotide insertions, deletions and substitutions, in Pseudomonas
53 L979F Pol zeta in vitro include single-base insertions, deletions and substitutions, with the highes
54 vely, which recognize base-base mispairs and insertions/deletions and initiate the repair process.
58 e polymorphisms, simple sequence repeats and insertion/deletions) and location (exon and intron seque
59 variations (single nucleotide variations and insertion/deletions) and to help guide and summarize gen
60 a simple and versatile method for generating insertion, deletion, and point mutations on chromosomal,
61 on to precise excision, several "suppressor" insertion, deletion, and point mutations restore the wil
62 GPCRs except GABA(B) receptor, in the CaR by insertion, deletion, and site-directed mutagenesis of sp
64 ally validated all loss-of-function, inframe insertion/deletion, and missense variants predicted as d
65 s include >35,000 point mutations, 446 small insertion/deletions, and >6,000 genes affected by copy n
66 ges the ability of current methods to detect insertions, deletions, and copy-number variations betwee
67 e TGF-beta superfamily is dictated by unique insertions, deletions, and disulfide bonds rather than a
70 an be distinguished by the unique pattern of insertions, deletions, and point mutations in each copy.
74 ite instability, increased number of somatic insertions/deletions, and altered mutation signatures in
75 t increases in base substitutions, small DNA insertions/deletions, and gross chromosomal rearrangemen
76 bination system, allow for selection of tolC insertions/deletions anywhere on the E. coli chromosome
77 outcome, whereas missense, splice site, and insertion/deletions are less reliably associated with ag
81 Deleted alleles also typically include small insertion/deletions at predicted deletion junctions.
84 ximately 98% of differences (including large insertion-deletions) between pairs of strains from three
85 rating a broader range of variations such as insertions/deletions, block substitutions, IUPAC codes s
86 accurate estimates on gene gains/losses (or insertions/deletions), but also reduces any concern of a
87 the recognition of base-base mismatches and insertions/deletions by bacterial MutS or eukaryotic MSH
89 endipitous mouse mutant in which a transgene insertion/deletion caused severe polycystic kidney disea
90 tform that detects nucleotide substitutions, insertions/deletions, chromosomal translocations, copy n
91 qual in frequency to deletions, and compound insertion-deletions comprised only 0.1% of all events.
92 7:H7 serotype based on a conserved signature insertion/deletion (CSI) located in the ybiX gene using
93 identify a series of novel set of mid-range insertion/deletion detection that were confirmed by targ
95 al analysis revealed a predominance of small insertion/deletion, duplication, and base substitution m
96 omirskiidae mitochondrial genomes are due to insertion/deletion/duplication of these elements rather
97 numts, we quantified the frequency of small insertions, deletions, duplications, and instances of mi
98 to identify genomic rearrangements, such as insertions, deletions, duplications, and inversions, com
99 A editing core complex (RECC) catalyze the U-insertion/deletion editing cascade to generate open read
101 gen, most mRNAs are internally modified by U-insertion/deletion editing while guide RNAs and rRNAs ar
102 ochondrial pre-mRNAs undergo massive uridine insertion/deletion editing, which creates open reading f
105 guishes length variants from noise including insertion/deletion errors in homopolymer runs by address
108 ated from one another by only 49 SNPs and 11 insertion-deletion events (indels) in the core genome.
109 single nucleotide variants (SNVs) and 79,529 insertion-deletion events that result in a total of 3.3
110 y of de novo copy number variants (CNVs) and insertion/deletion events (indels) is significantly elev
112 n genomic regions that are prone to repeated insertion/deletion events and were responsible for an un
114 emonstrate SLOPE's ability to rapidly detect insertion/deletion events of various sizes as well as tr
115 million rare single-nucleotide variants and insertion/deletion events, of which ~176,000 are predict
117 in CYP19A1 (intron 4 [TTTA]n, intron 4 [TCT] insertion/deletion, exon 10 C/T) are related to some hor
119 entrocyte subtype had high TP53 mutation and insertion/deletion frequencies and expressed LMO2, CD58,
120 ytical results for point mutations and small insertions/deletions from 3,281 tumours across 12 tumour
121 ic assemblies, including single-base errors, insertions/deletions, genome rearrangements and chimeric
122 number variations, mRNA and genomic SNP and insertion-deletion genotypes, or the expression of appro
123 MutSbeta (MSH2-MSH3) mediates repair of insertion-deletion heterologies but also triggers triple
124 Most genetic studies have focused on an Alu insertion/deletion (I/D) polymorphism in the ACE gene (D
125 (-675 4G/5G deletion/insertion) and tPA (Alu insertion/deletion [I/D]), are associated with strokes,
126 t preferentially process base-base and small insertion/deletion (ID) mispairs, respectively, despite
127 million single-nucleotide polymorphisms and insertions/deletions identified by whole-genome sequenci
128 recognition of DNA mismatches or nucleotide insertions/deletions (IDLs) by MutS and MutS homologues.
130 and combinatorial, subject to a single-unit insertion/deletion in a 5' flanking dinucleotide repeat
132 gonococcal MMC repairs mismatches and small insertion/deletions in DNA and also affects the recombin
133 of these fast evolving effectors through (i) insertion/deletions in loop regions between alpha-helice
135 s is suggested by the high prevalence of TTN insertion/deletions in the 1000 Genomes Project cohort.
136 The gene CDKN1B is inactivated by small insertions/deletions in 8% of patients with SI-NET sugge
139 sis revealed four nonsynonymous SNPs and two insertions/deletions in the susceptible allele of Las2,
141 of single nucleotide polymorphisms (SNPs) or insertion-deletion (indel) alleles at genomic loci in mu
142 slippage is a structural mechanism by which insertion-deletion (indel) mutations are introduced duri
143 The R genes tested to date segregate for insertion-deletion (indel) polymorphisms where susceptib
144 e the value of our approach by examining the insertion-deletion (indel) process in the enolase gene a
145 ence dissimilarity corresponds with the fast insertion-deletion (indel) rates observed in short monon
147 we show that each of 12 base substitution, 2 insertion/deletion (indel) and 6 rearrangement mutationa
148 nymous changes per gene and more than 16,000 insertion/deletion (indel) and copy number changes, prov
149 ective single-nucleotide polymorphism (SNP), insertion/deletion (INDEL) and copy number variation (CN
150 otgun sequencing (WGS) data, such as SNP and insertion/deletion (INDEL) calling, can also be achieved
151 report a phylogenetic analysis of genomewide insertion/deletion (indel) data, an approach conventiona
153 ukaryotic cells, resulting in frame-shifting insertion/deletion (indel) mutations and subsequent prot
155 tor, was developed to automatically identify insertion/deletion (indel) polymorphisms as well as inde
156 70-mer oligonucleotide elements representing insertion/deletion (indel) polymorphisms between the Ara
157 SNPs by imputation P-value revealed a 30 bp insertion/deletion (indel) variant that was significantl
158 single-nucleotide variants (SNVs) and short insertion/deletion (indel) variants from deep whole-geno
159 atalog of millions of single nucleotides and insertion/deletion (INDEL) variants of the human populat
160 higher and lower risk haplotypes revealed an insertion/deletion (indel) with a net addition of 830 bp
162 le-nucleotide substitutions (SNP/SNV), short insertions/deletions (INDEL) and structural variants/cop
164 ide variety of structural variants including insertion-deletions (indels), inversions and translocati
165 y single nucleotide polymorphisms (SNPs) and insertion-deletions (indels), perform SNP annotations an
166 landscape of quiescence is characterized by insertion/deletion (indels) accumulating as fast as sing
167 tect single nucleotide polymorphisms (SNPs), insertion/deletions (indels) by comparing high-throughpu
169 en single nucleotide variations (SNVs) and 2 insertion/deletions (INDELs) were identified; these muta
170 were abundant; 1078 SNPs (1/45.7 bp) and 178 insertions-deletions (INDELs) (1/277.0 bp) were identifi
172 , single-nucleotide polymorphisms (SNPs) and insertions/deletions (indels) can result in altered on-t
173 single-nucleotide variants (SNVs) and small insertions/deletions (indels) detected per sample were 8
176 amage, often result in unintended nucleotide insertions/deletions (indels) via mutagenic nonhomologou
177 ingle nucleotide polymorphisms (SNPs) and 25 insertions/deletions (indels) were detected in HvP5CS1 a
178 such as single-nucleotide polymorphisms and insertions/deletions (indels), and by sequencer errors m
179 tologic malignancies includes substitutions, insertions/deletions (indels), copy number alterations (
180 er, single-nucleotide variants (SNVs), small insertions/deletions (indels), copy-number variants (CNV
181 orphisms (SNPs), 58,085 small and 2315 large insertions/deletions (indels), with highly correlated ge
183 ave predicted 4314 GRs including large-scale insertions, deletions, inversions and translocations bas
184 ble misaligned sequence reads for predicting insertions, deletions, inversions, tandem duplications a
185 eral thousand single nucleotide variants and insertions/deletions, it remains a challenge to analyze
186 ed mutations such as substitutions and small insertion/deletions, large structural alterations and co
188 te that, following the recognition of a 3-bp insertion-deletion loop mismatch, the MMR machinery sear
190 cleotides whereas MutSbeta recognizes longer insertion-deletion loops (IDLs) with 1 to 15 unpaired nu
192 s in MMR, Msh2-Msh6 binds mispairs and small insertion/deletion loops, and Msh2-Msh3 binds larger ins
196 of the 8 possible base:base mispairs, the +1 insertion/deletion mispair, and to a low level on the +2
197 o a low level on the +2 but not the +3 or +4 insertion/deletion mispairs and not on the CC mispair.
199 Msh2-Msh6 heterodimer and the recognition of insertion/deletion mispairs by the Msh2-Msh3 heterodimer
200 s involving the recognition of base-base and insertion/deletion mispairs by the Msh2-Msh6 heterodimer
201 with the DNA conformations induced by small insertion/deletion mispairs than with those induced by l
202 ed defects in repair of both small and large insertion/deletion mispairs, whereas the second class ca
203 s caused defects only in the repair of small insertion/deletion mispairs; mutations of the first clas
204 onary models compatible with the affine-cost insertion/deletion model used in standard pairwise seque
205 This paper discusses progress in the area of insertion-deletion models, in view of recent work by Eza
206 Here, we review the mechanism of uridine insertion/deletion mRNA editing in kinetoplastid protist
207 However, guide RNAs (gRNAs) that direct U-insertion/deletion mRNA editing in mitochondria of trypa
209 Aside from nucleotide substitutions and insertion/deletions, multiple IS6110 transposition event
217 rk, these genes were cloned, and chromosomal insertion-deletion mutations inactivating them were obta
218 utations were further grouped as deletion or insertion-deletion mutations, substitution mutations, in
220 identified heterozygous missense or in-frame insertion/deletion mutations in C1R (15 families) or C1S
222 BRCA1 null breast tumors, there are specific insertion/deletion mutations located close to R-loop-med
223 were heterozygous missense or small in-frame insertion/deletion mutations occurring within one of the
224 We recently identified 2 patients with novel insertion/deletion mutations predicted to result in mRNA
225 nonymous single nucleotide polymorphisms and insertion/deletion mutations when our Weiss (n = 4) and
227 g schemes in mouse embryos, including indel (insertion/deletion) mutations, point mutations, large de
228 ct the genome in a variety of ways, creating insertions, deletions, new splice sites or gene expressi
231 47 cases (10%): 46 frameshift mutations with insertion/deletion of one to 28 base pairs in exon 7 (n
233 ) of the new model reveal fast rates of gene insertions/deletions on recent branches, suggesting a fa
236 tructures emerge in evolution as a result of insertions, deletions or shuffling of fragments of under
237 an promote efficient introduction of desired insertions, deletions or substitutions at or near the cu
238 typic and genotypic tests were attributed to insertions/deletions or point mutations identified in O-
239 sent single nucleotide polymorphisms but are insertions/deletions originating from DNA replication sl
242 tudy tested the hypothesis that the ACE gene insertion/deletion polymorphism associates with AF recur
245 T-2) gene variants rs3217318, a 19-base-pair insertion/deletion polymorphism in the promoter region,
247 xysmal (59%) or persistent (41%) AF, the ACE insertion/deletion polymorphism was genotyped using poly
248 ells expressing TRBV4-3 because of a 21.5-kb insertion/deletion polymorphism, but these individuals r
249 ts derived from short tandem repeats (STRs), insertion deletion polymorphisms (indels) and single nuc
250 e single-nucleotide polymorphisms (SNPs) and insertion-deletion polymorphisms (indels) within bovine
251 e single nucleotide polymorphisms (SNPs) and insertion-deletion polymorphisms (indels) within bovine
254 000 is determined by coding, regulatory, and insertion/deletion polymorphisms at five chromosomal loc
256 escape was associated with substitutions and insertion/deletion polymorphisms in the V1 and V4 domain
257 p populations revealed that neither the IRGM insertion/deletion polymorphisms nor the CNV was associa
258 nsynonymous single nucleotide polymorphisms, insertion/deletion polymorphisms, or splice site alterin
259 ts included single-nucleotide polymorphisms, insertions/deletions, polynucleotide tracts, and differe
260 heless often edited with inversions or small insertion/deletions produced at CRISPR recognition sites
261 s with SCWRL and a loop-modeling program for insertion-deletion regions with user-selected sequence s
262 produces full atomic level models (including insertion/deletion regions) of protein complexes as long
263 coverage included 218 of 247 SNPs, 10 of 11 insertion/deletion regions, and the repeat elements IS10
264 f single nucleotide polymorphisms (SNPs) and insertion/deletions resulting in amino acid changes in t
265 nit RNA editing complexes catalyze uridylate insertion/deletion RNA editing directed by complementary
267 d in processing events as diverse as uridine insertion/deletion RNA editing in mitochondria of trypan
271 ub-Saharan Africa, depends on a remarkable U-insertion/deletion RNA editing process in its mitochondr
272 UTase 2 (RET2) play central roles in uridine insertion/deletion RNA editing, which is an essential pa
274 There are strain-specific rearrangements, insertions, deletions, single nucleotide polymorphisms,
275 tion of a non-Watson-Crick base-pair or base insertion/deletion site in DNA, and its interactions wit
276 ernative methods for all cloning procedures (insertions, deletions, site-directed mutagenesis and sub
278 A alignment, including alternative splicing, insertions, deletions, substitutions, sequencing errors
279 notate single nucleotide variants (SNVs) and insertions/deletions, such as examining their functional
280 ore critical for the recognition of small +1 insertion/deletions than larger +4 insertion/deletions.
281 on mispairs than with those induced by large insertion/deletions that are intrinsically bent and stra
284 derived from the sequence alignment without insertions/deletions, the outer carboxylates did not fac
285 are variants and more complex variants (e.g. insertions, deletions), their role in disease is as yet
286 Plastid-LCGbase facilitates gene variation (insertion-deletion, translocation and rearrangement) and
288 xon 1B splice site variant, a 30-bp in-frame insertion/deletion variant of exon 6 that alters a proli
289 esults were obtained for 10,641,224 SNPs and insertion-deletion variants with minor allele frequencie
291 ed a strong enrichment of very low-frequency insertion/deletion variants, so far under-investigated,
294 ws biologists to discover potential point or insertion-deletion variations from cDNA-genome alignment
296 40, rs10954213, and rs10488631 and the CGGGG insertion/deletion were genotyped in these patients.
297 ssense, predicted splice site mutations, and insertion/deletions were classified as "other." We compa
298 single nucleotide polymorphisms, as well as insertions/deletions which can be used to rapidly develo
299 calcium channels aligned with NavAb without insertions/deletions, which suggests that NavAb is a pro
300 ong these, 70% are nonsense, splice site, or insertions/deletions with frameshift for which no domina
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