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   1  on the opposite DNA strand in the psbT/psbH intergenic region.                                      
     2 haracterize YqjI regulation of the yqjH-yqjI intergenic region.                                      
     3 scape to contain the full upstream PAX6-RCN1 intergenic region.                                      
     4 sequence (UAS)(INO) (E-box) sequences in the intergenic region.                                      
     5 npA), a hypothetical protein gene, and in an intergenic region.                                      
     6  PntR bound only the corresponding pntR-gapR intergenic region.                                      
     7 ential PecS binding sites were found in this intergenic region.                                      
     8 t occurred from factors within the SNA3-INO1 intergenic region.                                      
     9 e N gene and a novel 6-nt insert in the HN-L intergenic region.                                      
    10 e of 15,198 nt and a 6-nt insert in the HN-L intergenic region.                                      
    11 tiation remains unexpectedly high across the intergenic region.                                      
    12 onserved regulatory element in the noncoding intergenic region.                                      
    13 second binding site located in the manX-manY intergenic region.                                      
    14 tor sites positioned in the NWMN_0027-0026.5 intergenic region.                                      
    15  reading frame (ORF) (GAL1-YLR454W) or in an intergenic region.                                      
    16 hich binds to two operators in the simR-simX intergenic region.                                      
    17 ption factor that binds with the serC-Rv0885 intergenic region.                                      
    18  region compared to those seen in the intact intergenic region.                                      
    19 ence motif, most of which are located in the intergenic region.                                      
    20 s), and 68 meningococci had the capsule-null intergenic region.                                      
    21 osite orientations, separated by a noncoding intergenic region.                                      
    22  Five states map mainly to genes and five to intergenic regions.                                     
    23 oter-proximal regions to the gene bodies and intergenic regions.                                     
    24 s selected more features from non-CpG island intergenic regions.                                     
    25 D hotspots occur almost equally in genic and intergenic regions.                                     
    26 pped reads were also found from intronic and intergenic regions.                                     
    27 ce sites, 5' and 3' UTRs, non-coding RNA and intergenic regions.                                     
    28 rity of these sites are present in predicted intergenic regions.                                     
    29 alities found in human cancer are located in intergenic regions.                                     
    30 nscribed regions, both within introns and in intergenic regions.                                     
    31 ranslocatome by increasing rearrangements to intergenic regions.                                     
    32 her transposon classes, as well as genic and intergenic regions.                                     
    33 1, DHRS12, ITPK1, ACSF3 and TNFRSF13C, and 2 intergenic regions.                                     
    34 hisms (SNPs) from 46 candidate genes and two intergenic regions.                                     
    35 polyA) transcripts originating from presumed intergenic regions.                                     
    36 on start sites (TSSs), mainly in introns and intergenic regions.                                     
    37 s bind most or all of their strong motifs in intergenic regions.                                     
    38 ts, such as promoters, exonic, intronic, and intergenic regions.                                     
    39 ns (UTRs), but it is depleted on introns and intergenic regions.                                     
    40 ication by investigating its localization to intergenic regions.                                     
    41 nannotated genomic segments corresponding to intergenic regions.                                     
    42 at are hypomethylated are overrepresented in intergenic regions.                                     
    43 an paternally methylated DMRs that reside in intergenic regions.                                     
    44  gene density resulting from an expansion of intergenic regions.                                     
    45  sequence and structural features located in intergenic regions.                                     
    46  statistically significant footprints within intergenic regions.                                     
    47 As, tRNAs, snRNAs, transposable elements and intergenic regions.                                     
    48 risingly extends to both genic and expansive intergenic regions.                                     
    49 ier microsatellite loci located in conserved intergenic regions.                                     
    50 hylation are localized to CpG islands within intergenic regions.                                     
    51 majority of detected heteroplasmies occur in intergenic regions.                                     
    52 -enhancers demonstrated extensive binding at intergenic regions.                                     
    53 tion start sites, within gene bodies, and in intergenic regions.                                     
    54 moters in gene bodies and non-coding RNAs in intergenic regions.                                     
    55 matin accessibility at a large subset of the intergenic regions.                                     
    56 trand switch regions, telomeric regions, and intergenic regions.                                     
    57 ally targets transposable elements (TEs) and intergenic regions.                                     
    58 gnition of DNA photoproducts, prevalently in intergenic regions.                                     
    59 ted leader sequences, antisense strands, and intergenic regions.                                     
    60 ination bias toward both high GC content and intergenic regions.                                     
    61 ncoding RNAs, regulatory elements, and other intergenic regions.                                     
    62 dentified signals include two that reside in intergenic regions (1q31.1 and 5p13.1) and three residin
    63  strongest is located on chromosome 2, in an intergenic region 35- to 80-kb upstream from the thyroid
  
    65 at least four potential enhancers located in intergenic regions 50-69 kb downstream of the human CYP2
  
  
    68 nscriptional regulation within the yqjH-yqjI intergenic region and suggest a possible model for commu
  
    70    RH50 binds to transcripts of the 23S-4.5S intergenic region and, in its absence, levels of the cor
    71 border regions between domains contain large intergenic regions and a high density of transcription f
    72 ng transcriptionally silent chromatin within intergenic regions and at the border of euchromatin and 
    73 ndicates that Dnmt3a occupies and methylates intergenic regions and gene bodies flanking proximal pro
  
    75 al activity in most non-PcG target genes and intergenic regions and is governed by opposing roaming a
    76  we mapped many transcription start sites in intergenic regions and opposite to annotated genes, demo
    77 nd observed an enrichment of hotspots in its intergenic regions and repetitive DNA, which is consiste
    78 i-cistronic operons with rationally designed intergenic regions and systematically increased upstream
  
    80 ccurred throughout the genome, with introns, intergenic regions and transposons being relatively more
    81 ption from noncoding regions, including both intergenic regions and, especially, noncoding regions an
    82 coding RNA complementary to the 4.5S-5S rRNA intergenic region, and its presence correlated with that
  
    84 odels included SNPs in BCL11A, the HBS1L-MYB intergenic region, and the site of the HBB gene cluster,
  
    86 any of the undermethylated sites occurred in intergenic regions, and for most of these sites, we iden
    87 f sequence variation in regulatory genes and intergenic regions, and in genes involved in transport, 
    88 ethylated regions were located in introns or intergenic regions, and postulated these might regulate 
    89 ores, enriched within gene bodies but not in intergenic regions, and preferentially harbored binding 
    90 bserve that the genome is more accessible in intergenic regions, and that increased accessibility is 
  
    92  coding regions and introns when compared to intergenic regions, and these effects are increased in a
    93 introns), while being depleted in coding and intergenic regions, and these findings may have biologic
    94 he pnp transcript, initiated in the rpsO-pnp intergenic region; and the rpsO transcript all increased
    95 (rRNA) processing, many coding sequences and intergenic regions appeared to be direct targets of RNas
  
    97 er through the realization that mutations in intergenic regions are actually within unannotated small
    98 ell embryos is highly promiscuous, such that intergenic regions are extensively expressed and thousan
  
   100 evealed massive gene losses and reduction of intergenic regions as factors leading to their drastical
   101 uble-strand breaks (DSBs) in the MATa1-MATa2 intergenic region, as we demonstrate both in vivo and in
   102  processed forms of both genes linked by the intergenic region, as well as other transcripts in which
   103 t may be transcribed: coding, noncoding, and intergenic regions, as well as repetitive elements, telo
   104  x 10(-13); effect size = 12%) and a further intergenic region at 6p21.33 (cg06126421, P = 4.96 x 10(
  
   106  renamed McaS, was predicted to reside in an intergenic region between abgR, encoding a transcription
   107     One of these, at chromosome 11p13, is an intergenic region between Ets homologous factor (EHF) an
   108 ated within a predicted super-enhancer in an intergenic region between HLA-DRB1 and HLA-DQA1, localiz
   109 of KaeR at two distinctive sites, one in the intergenic region between LVIS1988 and kaeR (-39 to +2) 
   110  regions go through substantial changes: the intergenic region between NP and VP35, as well as the fi
   111 R binds directly to a specific region in the intergenic region between ohr and ohrR that shares exten
  
   113 entified 28 targets of PA2588, including the intergenic region between PA2588 and pqsH, which encodes
   114 PecS, which exists as a homodimer, binds the intergenic region between pecS and pecM genes with high 
  
  
   117 SMU.1349 protein demonstrated binding to the intergenic region between SMU.1349 and the TnSmu2 operon
  
  
   120  Tandem repeats were frequently found in the intergenic region between the prophage at the 3' end and
  
  
   123 ame (locus tag: bglu_2g14480) located in the intergenic region between tofI and tofR was found to be 
   124 ter plasmid containing both the OriS and the intergenic region between VZV open reading frames (ORFs)
   125 ontrol region (LCR), epsilon-globin, and the intergenic regions between gamma-globin and delta-globin
  
   127  has been done to describe the rat Chrnb4/a3 intergenic region, but few studies have examined the hum
  
   129 15 GANTC sites, preferentially positioned in intergenic regions, changed progressively from full to h
   130 G, NID1, DHRS12, ITPK1, ACSF3, TNFRSF13C and intergenic region chr10p12.31 was replicated in a cohort
   131 plates are at different positions within the intergenic region compared to those seen in the intact i
  
  
   134  with the Aspergillus ST/AF clusters and its intergenic regions contain 14 putative binding sites for
   135 : 1.09 x 10(-6)) in a highly conserved 32 kb intergenic region containing regulatory elements between
  
  
   138 ion in CpG island (CGI) and demethylation in intergenic regions, defined as 'backbone', largely vary 
   139 assemia deletion, which retains the required intergenic region, deletes other surrounding sequences, 
  
   141 letions that shorten the total length of the intergenic region disrupt the ability of YqjI to regulat
   142 ion, but few studies have examined the human intergenic region effects on expression; therefore, thes
   143 d are more likely to occur in the genic than intergenic regions, especially common in the 5'- and 3'-
   144 ta4, Vbeta16, and the Vbeta4/Vbeta16-Vbeta10 intergenic region exhibited constitutive high CpG methyl
  
   146 orphic genes which are separated by a 227 bp intergenic region: first, the secreted form as previousl
  
   148  contains hundreds of V(H)s, separated by an intergenic region from Igh Ds, J(H)s, and constant regio
  
   150   Across five categories of genomic regions, intergenic regions had the highest SNP density and avera
   151     Further, we found that GC-rich genes and intergenic regions have higher levels of genetic diversi
  
   153 trol modules, spread throughout the flanking intergenic region, have regulatory activities that overl
   154 s have identified common variants within the intergenic region (HBS1L-MYB) between GTP-binding elonga
   155 f somatic mutation across exons, introns and intergenic regions highlights the repertoire of cancer g
   156 ociated haplotype blocks are in intronic and intergenic regions, hindering their functional evaluatio
   157 ve binding site in the chloroplast atpI-atpH intergenic region (i) blocks both 5'-->3' and 3'--> 5 ex
   158 5' and 3' untranslated regions as well as in intergenic regions, identification and validation of tru
   159 asmids containing the 255-bp lsrACDBFG-lsrRK intergenic region (IGR) fused to lacZ showed that essent
   160 re we document that the arenavirus noncoding intergenic region (IGR) has a high degree of plasticity 
  
  
   163 proach involved replacement of the noncoding intergenic region (IGR) of the L genome segment with the
   164    We have recently shown that the noncoding intergenic region (IGR) present in each arenavirus genom
   165 on and a point mutation within the L-segment intergenic region (IGR), and three silent changes in the
   166 irus using the previously reported L segment intergenic region (IGR), comprising the arenaviral trans
  
  
  
   170 ), HDL-cholesterol (PHOSPHO1, SYNGAP1 and an intergenic region in chromosome 2) and triglycerides (MY
   171 level of the pnp transcript initiated in the intergenic region in JSE1880, we utilized that transcrip
  
   173  (TUCs) along the genomic sequence; (ii) the intergenic regions in front of the first gene of each TU
   174 creases in promoter regions and decreases in intergenic regions in pre-iPSCs, then recovers to an int
  
   176  overrepresentation of RNAs from introns and intergenic regions in testes of Cstf2t(-/-) mice, and a 
   177 e longer and more conserved than the average intergenic regions in the corresponding bacterial genome
   178 eviously unrecognized transcription units in intergenic regions in the genome of Bacillus subtilis, w
   179 t microsatellite mapping found a bias toward intergenic regions in the nonconserved microsatellites a
   180   Microsatellite mapping found a bias toward intergenic regions in the nonconserved microsatellites a
  
   182 ons in the human genome differ from adjacent intergenic regions in transposable element density, cros
   183 ed-end Illumina sequencing of ssDNA revealed intergenic regions, including replication origins, as ho
   184  of these extension products to the rpsO-pnp intergenic region indicated that all four putative trans
  
  
  
   188 ted that the template-switching event during intergenic region (IR) sgmRNA synthesis occurs at the 5'
   189  of proposed P site binding domains from two intergenic region IRES RNAs bound to bacterial 70S ribos
  
   191 orders, including short (4- or 5-nucleotide) intergenic regions (IRs), a single long (144-nucleotide)
  
   193 single-nucleotide polymorphisms (SNPs) in an intergenic region located between the oncogenes MYC and 
   194  and the architecture of the lsrACDBFG-lsrRK intergenic region may control the expression of these op
   195 d rs11048230 (P=4.77x10(-8); MAF=0.10) in an intergenic region near RASSF8 (associated with vascular 
   196 sly mapped deletions, we elucidated a 3.5-kb intergenic region near the 5' end of the delta-globin ge
   197 s in the beta-globin locus, we identified an intergenic region near the delta-globin gene that is nec
   198 y study putative DNA regulatory sequences in intergenic regions near chloroplast genes in seven plant
  
  
   201 .71 x 10(-10), rs16891982), and revealed the intergenic region of BEND7 and PRPF18 as a novel locus a
  
  
   204 ts identified binding sites in the phnD-phnF intergenic region of M. smegmatis has allowed us to prop
  
   206 gle nucleotide polymorphism at the trnL-trnF intergenic region of the chloroplast chromosome was conf
  
  
   209  Base pairing of the GadY small RNA with the intergenic region of the gadX-gadW mRNA results in direc
   210 tides on the stem-loop (SL) structure in the intergenic region of the hepatitis E virus (HEV) genome 
   211 ription start site was identified within the intergenic region of the miR-183 cluster, which may regu
   212 ong noncoding transcripts (>200 nt) from the intergenic regions of annotated protein-coding genes.   
  
   214 cteristic of BFB; instead PDE9A was fused to intergenic regions of chromosome 21 or to genes on other
  
   216 genomes shows many cases of association with intergenic regions of genes with altered expression due 
  
   218 amming distance seeds to ncRNA search in the intergenic regions of human and mouse genomes and betwee
  
  
   221  existence of the H3K9me3 mark mainly within intergenic regions of the genome and identified specific
   222  and un-annotated exon boundaries, including intergenic regions of the genome, with high statistical 
  
  
   225  genomes of the diploid progenitors, but the intergenic regions of the Q/q locus are highly divergent
  
   227 c noncoding RNAs (lincRNAs) transcribed from intergenic regions of yeast and animal genomes play impo
   228 etected and showed that the presence, within intergenic regions, of sigma(70) promoters and sequences
  
  
   231 we demonstrate that the HELLP locus is in an intergenic region on 12q23.2 between PMCH and IGF1.     
   232 gnificant associations at two novel loci: an intergenic region on 9p21.3 (rs12553324, P = 5.87 x 10 (
   233 nflammatory states, maps to the 5' end of an intergenic region on Chr11p13 that is implicated as a mo
   234  Here, we show that polymorphism at a remote intergenic region on chromosome 11q13.3, recently identi
   235 6; p = 3.3 x 10(-8)), and rs6718520(A) in an intergenic region on chromosome 2p21, with THADA as the 
   236 ificance level at less than 5.0 x 10(-8): an intergenic region on chromosome 2q32.3, close to nucleic
   237 olymorphisms (SNPs) (r(2)>0.9) located in an intergenic region on chromosome 3q26 were associated wit
   238  evidence for association was observed in an intergenic region on chromosome 4 (rs753129; 'AD+PvAD-P'
   239 AR*D) or escitalopram (GENDEP) identified an intergenic region on chromosome 5 associated with early 
   240 d loci (CAV1-CAV2, CDKN2B-AS1, SIX1-SIX6, an intergenic region on chromosome 8q22, ABCA1, GAS7, AFAP1
  
  
   243 y to a short inverted repeat sequence in the intergenic region overlapping the predicted -10 regions 
   244 egulatory regions, as well as the intra- and intergenic regions, particularly in the X-chromosome amo
   245 regulated loci correspond to transposons and intergenic regions producing 24-nucleotide siRNAs that g
  
   247  exome sequencing data: reads in introns and intergenic regions, reads in the mitochondrial genome, a
   248 ic control region 1 (IGCR1) in the V(H)-to-D intergenic region regulates Igh V(D)J recombination in t
  
   250 pendent reporter gene cassette located in an intergenic region remained silent, indicating that the t
   251  also observe complex epigenomic profiles of intergenic regions, repeated transposable element (TE) s
   252 ns resulted in the identification of a small intergenic region required for gamma-globin (fetal hemog
   253 onic regions compared to heterochromatic and intergenic regions, respectively, and depletion of MSI a
   254 n of a 198-nucleotide sequence into the HN-L intergenic region, resulting in reduced viral gene expre
   255 f a 605-bp region within the RPA135-tK(CUU)P intergenic region results in a reduction in the RPA135-I
   256 tes (DHSs) spanning the entire upstream IL-3 intergenic region revealed the existence of a complex cl
   257 S_NmUC isolates was an IS1301 element in the intergenic region separating the capsule ctr-css operons
   258 NA genome, with an 827 nt-long 5' UTR and an intergenic region separating two open reading frames.   
   259 tribution of several non-B DNA motifs within intergenic regions separating divergently oriented opero
   260 BCG1, CPT1A, MYLIP, TXNIP and SLC7A11) and 2 intergenic regions showed differential methylation in as
   261 indromic (REP) elements within the yqjH-yqjI intergenic region shows that these sequences are not req
   262 ed by RNA polymerase II and map to low-copy, intergenic regions similar to PIWI-interacting RNAs (piR
  
   264 tcdR ribosome binding site and the tcdR-tcdB intergenic region, suggesting that a mechanistic basis f
   265 tion from its own promoter by binding to the intergenic region, suggesting that SMU.1349 acts as both
   266 cted, nucleotide diversity is much higher in intergenic regions than within gene bodies (regions span
   267  a 75-bp sequence within the RPA135-tK(CUU)P intergenic region that is involved in the interaction.  
   268 date control elements, we deleted the 100-kb intergenic region that separates the V(H) and D clusters
   269 evising several methods to select subsets of intergenic regions that can concentrate these rare RNA c
   270 icular interest is DNA variations located in intergenic regions that comprise regulatory sites for TF
  
   272 To identify a comprehensive set of genes and intergenic regions that impacts fitness in S. elongatus,
   273 insertions were located in 51 distinct genes/intergenic regions that must be involved either directly
  
   275  and end sites, and when they are located in intergenic regions they are located near regulatory fact
   276 icient resolution in the larger intronic and intergenic regions to identify copy number changes.     
  
  
   279     lacZ transcriptional reporter fusions to intergenic regions upstream of genes encoding the T3SS s
  
  
  
  
   284 es in both the vah1-plp and rtxH-rtxB genes' intergenic regions were determined using 5' random ampli
  
  
   287 G islands were shown to be in intragenic and intergenic regions, whereas less than 3% of CpG islands 
   288 4.8 kb miR-183 family cluster, including the intergenic region which contains highly conserved genomi
   289    Most of the remaining variants lie in the intergenic region, which exhibits evolutionary conservat
   290 We applied this methodology to the HBS1L-MYB intergenic region, which is associated with red-blood-ce
   291  results indicate that sRNAs are enriched in intergenic regions, which are longer and more conserved 
   292 WAS) appear to be located within intronic or intergenic regions, which makes it difficult to interpre
  
   294  with a transposon insertion in the upstream intergenic region, while FT2c and FT2d obtained a transp
   295 to DNA from both the penR-gapN and penM-penH intergenic regions, while PntR bound only the correspond
   296 Stringtie was then performed to identify the intergenic regions whose expression was influenced by th
   297 nd purified OhrR interacts with the ohr-ohrR intergenic region with a greater affinity and this inter
   298      We show that XdhR binds the xdhABC-xdhR intergenic region with high affinity (Kd approximately 0
  
  
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