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1 h the C57BL/6J (B6) allele--6 exonic and 177 intronic.
2 4 (rs11105306, pooled P = 1.02 x 10(-16)) is intronic.
5 hich explains its known interaction with the intronic 3 site of NUMB exon 9 contributing to regulatio
7 analysis suggested 12 new likely pathogenic intronic ABCA4 variants, some of which were specific to
11 n neuroblastoma cells, we showed that nELAVL intronic and 3' UTR binding regulates human RNA splicing
12 RNA sequencing revealed that PSPC1 binds to intronic and 3'-untranslated regions of a number of adip
13 on signals associated with upstream, exonic, intronic and downstream genomic loci from A. mellifera M
15 discovered that the overwhelming majority of intronic and exonic RE are expressed in the same orienta
16 ation of functional RBP-binding sites within intronic and exonic sequences of regulated pre-mRNA.
18 From the MiSeq run, we identified multiple intronic and exonic single-nucleotide variations (SNVs),
19 A (IVS-AAA) that completely matched both the intronic and exonic U1 binding sequences of the mutated
23 ntify 1775 multi-exonic transcripts from 561 intronic and intergenic haploblocks associated with 392
24 ions and sufficient resolution in the larger intronic and intergenic regions to identify copy number
25 SNPs) and associated haplotype blocks are in intronic and intergenic regions, hindering their functio
27 mplify the entire coding region and flanking intronic and regulatory sequences of 88 genes and 40 mic
28 V] rs12614435; p = 6.76 x 10(-18)) comprised intronic and several highly correlated missense variants
33 nign variants in synonymous (AUC = 0.88) and intronic (AUC = 0.83) public datasets, dismissing benign
34 n element that is predominantly found within intronic binding sites and linked to repression of exon
38 s and sequences, and (ii) thousands of novel intronic circular RNAs (IcircRNAs) are expressed in cell
40 oncoding sequence 2 (CNS2), a CpG-rich Foxp3 intronic cis-element specifically demethylated in mature
41 re associated with a unique configuration of intronic cis-elements that promote rapid switch-like reg
42 methylated regions, including CNS1 and CNS2, intronic cis-regulatory elements in the Foxp3 locus.
43 In the same animals, methylation of four intronic CpG sites was decreased, amplifying glucose-ind
45 signal for rs1358071 within the MAPT region (intronic=CRHR1, p=4.91x10(-7)) with the effect allele ta
46 h FECD, the strongest association is with an intronic (CTG.CAG)n trinucleotide repeat expansion in th
48 y binds in vivo to an Arx enhancer and to an intronic CXCR7 enhancer that remains active in mature in
50 cursor protein (APP) duplication and a BACE2 intronic deletion) and 3/12 non-synonymous DNVs (in PSEN
53 of denatured dsDNA, in which Zn(2+)-tolerant intronic DNA provides annealing protection on otherwise
55 binding, factors that target intergenic and intronic DNA, and factors with distinct chromatin state
58 ChIP analyses, we show that SOX2 binds to an intronic domain of the PTCH1 locus to regulate PTCH1 exp
60 overlapping an evolutionary constrained Tst intronic element and the other residing in the seed regi
61 ractions between the promoter and cis-acting intronic elements including enhancers, which are also de
63 is suppressed in CHF via inhibition of AT2R intronic enhancer activity, leading to lowered muscle re
64 ression is driven through a highly conserved intronic enhancer element by the transcription factors P
67 analysis revealed that TFAP2C binding to an intronic enhancer is required for activation of Cdx2 exp
71 slands and were unexpectedly associated with intronic enhancer regions defined in normal B cells and
73 within the intron, and movement of putative intronic enhancer sequences to multiple promoter-proxima
77 onfiguration is the insertion of specialized intronic enhancers between polypyrimidine tracts and acc
80 ments and is regulated by cell-type-specific intronic enhancers, which loop to the promoter in the ac
83 ley employing two alternative promoters, one intronic/exonic, to generate two sequence-overlapping bu
90 gle nucleotide polymorphism (SNP; rs4888378, intronic in CFDP1) in Progressione della Lesione Intimal
91 nd functional validation identified a common intronic indel, rs144361550 (-/GGGCCC; r(2) = 0.947 with
92 ch IL-1R1 gene expression is disrupted by an intronic insertion of a loxP flanked disruptive sequence
93 nditional alleles in zebrafish by generating intronic insertions via in vivo homologous recombination
94 ing disease by disruption of a long-distance intronic interaction controlling alternative splicing.
95 e differentiation, the preferred targets are intronic/intergenic sequences with enhancer-like activit
101 non-exonic variants and provides examples of intronic loss-of-function variants with pathological rel
102 tly, since miCLIP data reveal Sxl as a major intronic m(6)A target, and female-specific Sxl splicing
103 found that FTLD-Tau neurons, either with an intronic MAPT mutation or with an exonic mutation, devel
104 at PIM3 repression is mediated by miR-33, an intronic microRNA encoded within the SREBP loci, the exp
106 Here, we describe a novel method based on intronic MiMIC insertions described in Nagarkar-Jaiswal
107 d novel exchange cassettes to convert coding intronic MiMIC insertions into gene-specific binary fact
109 im-trained mice, upregulation of miR-423-5p (intronic miR) and its host gene, NSRP1, is driven by an
110 en the expression of CDK4/6 and miR-149* and intronic miRNA-6883-5p encoding the clock gene PER1 in c
111 ty at promoters, rather than piggybacking of intronic miRNAs on sex-biased protein-coding genes.
112 suggests that the production of non-stop and intronic mRNA isoforms may represent a form of negative
113 3A mutation carriers presented the same deep-intronic mutation (c.1909+22G>A), which activates a cryp
115 three additional families carrying this deep intronic mutation and a base exchange four nucleotides u
117 For example, there are known cases where an intronic mutation disrupts the splicing of not only the
119 The most frequent genetic cause of LCA is an intronic mutation in CEP290 (c.2991 + 1655A > G) that cr
121 hotoreceptors are especially sensitive to an intronic mutation in the cilia-related gene CEP290, whic
123 We discovered that XLPDR is caused by an intronic mutation that disrupts the expression of POLA1,
125 equencing (WGS) identified a homozygous deep intronic mutation, c.254-649T > G, predicted to generate
126 ized mutant Cep290 mouse model, carrying the intronic mutation, showed a statistically significant re
129 in POLR3A-related syndromes, especially when intronic mutations are present, and thus can no longer b
130 de genetic and functional evidence that deep intronic mutations in OPA1 can cause optic atrophy and e
136 bust to deletion of any intergenic or deeply intronic non-coding region, indicating that proximal reg
137 netic mechanisms in optic neuropathies: deep intronic OPA1 mutations, which explain the disease in se
138 n studies (GWAS) appear to be located within intronic or intergenic regions, which makes it difficult
140 ave previously reported that the use of this intronic PAS depends on the nuclear polyadenylation fact
145 y HIPSTR (Heterogeneously expressed from the Intronic Plus Strand of the TFAP2A-locus RNA), a novel l
151 ampens transcription termination at a strong intronic polyadenylation site (PAS) in unc-44/ankyrin ye
155 In addition, processing of an alternative intronic promoter of miR-9-5 was validated by 5' RACE PC
156 is revealed a novel GR binding site in a BIM intronic region (IGR) that was engaged only in dexametha
157 The abnormal transcript with the retained intronic region coded a truncated protein that lacked th
158 eased transcription mediated directly by the intronic region containing the rs7554511 C variant.
161 1-rs11084307, P = 1.4 x 10(-6)) covering the intronic region of CACNG8 to be significantly associated
162 ssociation signals are present in the TCF7L2 intronic region of Hispanics, one of which is tagged by
163 -nucleotide polymorphism (rs12979860) in the intronic region of interferon-lambda4 (IFNL4) is a stron
164 p (n=436) with confirmation of rs6975107, an intronic region of KCND2 (potassium voltage-gated channe
166 -specific responsive element within the 15th intronic region of the HK2 gene, providing evidence of a
167 or depression, and a haplotype located in an intronic region of the L-type voltage-gated calcium chan
168 (formerly SPRY4-IT1), which lies within the intronic region of the SPRY4 gene, is up-regulated in hu
169 zed the histone modification profiles of the intronic region surrounding rs12041331 and identified H3
171 ex-dependent mRNAs contained a 75-nucleotide intronic region that increased the nuclear retention and
173 he transient receptor potential melastatin 1 intronic region, regulates oxidative phosphorylation and
174 SLIT2 gene, which contains miR-218-1 in its intronic region, was frequently observed in PSCCs, mainl
176 Approximately three quarters of conserved intronic regions among angiosperms and dicots, in partic
179 into a specific locus in the genome [such as intronic regions of endogenous eukaryotic translation el
180 the nucleus, hybridization predicted against intronic regions of pre-mRNAs was tested and confirmed.
181 AKAP95 binds preferentially to proximal intronic regions on pre-mRNAs in human transcriptome, an
182 ce variants map to non-coding intergenic and intronic regions, and it has been much more challenging
183 hat FTO binds preferentially to pre-mRNAs in intronic regions, in the proximity of alternatively spli
188 sely define the positions from which certain intronic regulatory sequences increase mRNA accumulation
189 repressive histone methylation marks at the intronic repeat elements in genes such as the Histone 3
190 rosophila laccase2 gene is regulated by both intronic repeats and trans-acting splicing factors.
192 o prevent exon-skipping, we have targeted an intronic repressor, Element1 (E1), located upstream of S
194 ight into potential mechanisms by which this intronic retroelement may induce transcriptional interfe
196 using mRNA stability measurements as well as intronic RNA expression analysis are consistent with a t
197 ce sites near intron borders or in exonic or intronic RNA regulatory silencer or enhancer elements, a
199 easurements of total and chromatin-bound FLC intronic RNA, a methodology appropriate for analyzing el
201 n analysis, we detected expression of stable intronic RNAs from the EBV BamHI W repeats that may be p
203 In multivariate logistic regression, the intronic rs6021191 variant in nuclear factor of activate
204 The lead SNP at the TSPAN15 locus is the intronic rs78707713 and the lead SLC44A2 SNP is the non-
206 of AID deamination events between the c-myc intronic sequence and inserted S region in different B c
207 g in aberrant OPA1 transcripts with retained intronic sequence and subsequent translational frameshif
208 sion in postselection thymocytes requires an intronic sequence containing an uncharacterized DNase I
209 alternative splicing of RNAs are governed by intronic sequence elements and produce transient lariat
211 essed genes associated in trans with a CIITA intronic sequence variant, integrate with CIITA recruitm
213 RNA structures (ncRNAs) are embedded within intronic sequences and are contributing to phenotype and
214 coding the extracellular domain and flanking intronic sequences are inserted into the switch region.
216 ow that interaction of PTBP1 with downstream intronic sequences can activate natural cassette exons b
218 Bimodal exons are flanked by more conserved intronic sequences harboring distinct cis-regulatory mot
219 ovo RNA structure prediction tools to screen intronic sequences in S. cerevisiae and 36 other fungi.
223 ic U1 snRNAs that, by targeting nonconserved intronic sequences, might reduce possible off-target eve
225 merous binding sites were also identified in intronic sequences, our RNA transcriptome sequencing ana
226 le with a dsRNA-specific antibody, including intronic sequences, RNAs with antisense overlap to anoth
230 increased type 2 diabetes risk linked to an intronic single nucleotide polymorphism in CDKAL1 In a m
236 evels and enables detection of NAD(+)-capped intronic small nucleolar RNAs (snoRNAs), suggesting NAD(
238 SNPs at the remaining three loci include an intronic SNP in FOXP1 at locus 3p13, an intergenic SNP a
239 d use CRISPR mutagenesis to validate that an intronic SNP in prominin regulates its editing levels.
241 the more efficiently spliced allele of this intronic SNP in SYCP2L is associated with increased ANM.
242 support a significant association between an intronic SNP in the MMP gene located on chromosome 6 and
244 contrast to the promoter SNP rs4950928, the intronic SNP rs12141494 in CHI3L1 is associated with ast
245 ved in European subjects was for the imputed intronic SNP rs1830298 in ALS2CR12 (telomeric to CASP8),
247 variants in these two regions suggested that intronic SNPs nearby are more strongly associated with d
249 ymorphisms (SNPs), exonic SNP rs12422149 and intronic SNPs rs1789693 and rs1077858, were genotyped in
250 Three additional independent signals from intronic SNPs were identified, in CASP8 (rs36043647), AL
252 R sequencing, the method found three cryptic intronic splice variants (one known and two experimental
253 tion, likely due to the action of a putative intronic splicing enhancer present in intron 25, which a
254 minigenes, we identified multiple exonic and intronic splicing enhancers and silencers that regulate
256 2] and c.920delG [p.Gly307Alafs( *)11]), one intronic splicing mutation (c.1164+5C>T), and six missen
257 ly regulated through a complex network of an intronic splicing silencer (ISS), a bipartite exonic spl
258 sly to a single bipartite motif of the human intronic splicing silencer ISS-N1, which controls surviv
259 n antisense oligonucleotide that targets the intronic splicing silencer N1 (ISS-N1), located downstre
260 ronic variants and illustrate versatility of intronic SSOs that target pseudo-3'ss to modify gene exp
264 s-regulatory elements, including a noncoding intronic telencephalon enhancer of DCHS1 The functions o
266 omising association at 10p13 with rs10904849 intronic to CUBN (MAF = 0.32, P = 7.01 x 10(-8); OR = 1.
268 % confidence interval = 1.06-1.13), which is intronic to PNKD (paroxysmal non-kinesigenic dyskinesia)
269 t one of the 83 replicated CpGs, cg11024682 (intronic to sterol regulatory element binding transcript
270 283 (odds ratio (OR)=4.32, P=1.79 x 10(-8)), intronic to transcripts of SLCO1B3 and SLCO1B7, members
271 -ethnic CRC risk locus at 10q25 (rs12241008, intronic to VTI1A; P=1.4 x 10(-9)), providing additional
275 a genetic disease caused by expansion of an intronic trinucleotide repeat in the frataxin (FXN) gene
276 interactions are frequently localized to the intronic U-rich polypyrimidine tracts (PPT) located 5' t
277 omplete nascent transcriptome; it is rich in intronic unprocessed transcript, as well as long interge
279 locus at chromosome 16q21 represented by an intronic variant (rs74019828) in the CSNK2A2 gene (beta=
281 dentified a previously unreported pathogenic intronic variant in CHM in two males with choroideremia.
282 that increase risk of liver diseases and an intronic variant in GNAS associating with increased thyr
283 mon variants were identified: rs10791286, an intronic variant in OPCML (P=9.89 x 10(-6)), and rs77001
284 fies and validates the role of rs9828519, an intronic variant in SLC9A9, in IFNbeta-treated subjects,
286 blished GWAS of HTS, we report that a common intronic variant in the CSMD1 gene is associated with re
287 08 95% CI 1.05-1.11, Pmeta=3.12 x 10-10), an intronic variant in the SMAD3 gene, which is known to pl
288 ifferent polyadenylation sites, including an intronic variant that codes for a protein isoform contai
289 round of exome sequencing revealed a single intronic variant therein (c.2885+8A>G [p.Ser963( *)] in
290 fibroblasts cultured from a patient with an intronic variant to determine the impact of the mutation
292 breaks, demonstrate functional plasticity of intronic variants and illustrate versatility of intronic
293 isms will be key to defining the role of the intronic variants and non-coding RNA for pain in patient
294 onal genomes.While non-coding synonymous and intronic variants are often not under strong selective c
295 a sets we observe significant association of intronic variants in ARHGAP15 (Rho GTPase-activating pro
296 pastic ataxia family turned our attention to intronic variants in POLR3A, a gene previously associate
300 notype, 2 variants in GC--one exonic and one intronic--were associated with serum DBP concentrations
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