ライフサイエンスコーパス: ligand-binding site

1 introduce a cysteine in the vicinity of the ligand binding site.

2 ent knowledge of the sigma1 receptor and its ligand binding site.

3 ty of the triazole product for the nicotinic ligand binding site.

4 igand complexes also supports the identified ligand binding site.

5 tant molecules and the fully formed phenolic-ligand binding site.

6 the largely disordered CT domain and the PDZ ligand binding site.

7 ly reported pharmacophore model for the FPR2 ligand binding site.

8 ch are consistent with a self-association or ligand binding site.

9 directly affects the avidity of the KIR3DL1 ligand binding site.

10 suggesting that lysine 155 is in or near the ligand binding site.

11 rearrangements in the switch3 region at the ligand binding site.

12 as MRS2500 blocks signaling by occupying the ligand binding site.

13 racting with a site other than the nicotinic ligand binding site.

14 tin repeats of the receptor contain a second ligand binding site.

15 receptor alpha subunit as components of one ligand binding site.

16 topology with a solvent-exposed hydrophobic ligand binding site.

17 in basic residues located only 12 A from the ligand binding site.

18 ntegrins contain an I-domain that is a major ligand binding site.

19 rance of HirCel7A may serve as an additional ligand-binding site.

20 ately 15 A from the classical, 'orthosteric' ligand-binding site.

21 mice or mice expressing sVEGFR-3 lacking the ligand-binding site.

22 at span a region immediately adjacent to the ligand-binding site.

23 peared to open and shape the entrance of the ligand-binding site.

24 olecules, shows no occupancy of its putative ligand-binding site.

25 e (Gln128) in modulating the geometry of the ligand-binding site.

26 ons, and as a result, induces changes in the ligand-binding site.

27 ith predicted variable residues exposed in a ligand-binding site.

28 y of approximately 3000 A(3) that could be a ligand-binding site.

29 s pocket is likely to represent a regulatory ligand-binding site.

30 CD and a conserved, membrane-distal putative ligand-binding site.

31 al PASTA domain that has the properties of a ligand-binding site.

32 17, 19, 21, and 23) that shares a conserved ligand-binding site.

33 different subunits in the homotrimer, on the ligand-binding site.

34 esidue 16 or 148 is part of, or near to, the ligand-binding site.

35 fills the entrance to the putative C8 gamma ligand-binding site.

36 integrin conformations without occluding the ligand-binding site.

37 o integrin alphavbeta3 outside the classical ligand-binding site.

38 y structure, the tertiary structure, and the ligand-binding site.

39 ositioning and increased mobility within its ligand-binding site.

40 ermediate mutations located distant from the ligand-binding site.

41 tering interhexamer interfaces remote to the ligand-binding site.

42 characterized compounds that act at the PAR1 ligand-binding site.

43 tide to its target Na channels at a distinct ligand-binding site.

44 g studies allowed identification of possible ligand binding sites.

45 , from Erwinia chrysanthemi and analyzes the ligand binding sites.

46 alk separation and exposure of extracellular ligand binding sites.

47 that can form tertiary contacts or serve as ligand binding sites.

48 These regions correspond to putative ligand binding sites.

49 own-regulates vinculin function by obscuring ligand binding sites.

50 each subunit presents multiple, interacting ligand binding sites.

51 from experiment and to determine yet unknown ligand binding sites.

52 ingle RNA in different states, and to detect ligand binding sites.

53 each other, or in pockets such as protein or ligand binding sites.

54 and (ii) prediction of sequence tolerance in ligand binding sites.

55 tion, the new structures have revealed novel ligand binding sites.

56 ertase have been identified in Factor B (FB) ligand binding sites.

57 , and co-existent, exo- and endofacial GLUT1 ligand-binding sites.

58 protein domain that can accommodate multiple ligand-binding sites.

59 nable allosteric signal transmission between ligand-binding sites.

60 employing in silico modeling of various FGFR ligand-binding sites.

61 g two benchmark databases and two particular ligand-binding sites.

62 ndSite is a web server for the prediction of ligand-binding sites.

63 s possible to discriminate between different ligand-binding sites.

64 of the heteromeric receptors contained beta4 ligand-binding sites.

65 ations expected to inhibit nAChRs with beta2 ligand-binding sites.

66 uctural features: 1) the lack of an internal ligand binding site; 2) a striking groove in the surface

67 to selectively capture alpha factor into the ligand-binding site after photoactivation.

68 logical inhomogeneity, and multiple possible ligand binding sites all conspire to limit characterizat

69 The presence of a ligand-binding site allowed the effect of redox modulati

70 on of individual orthosteric contacts in the ligand binding sites, allowing us to rank the energetic

71 ethod is based on experimental evidence that ligand binding sites also bind small organic molecules o

72 es of the secondary sites with known primary ligand binding sites also shows broad similarities indic

73 e that includes breathing of the orthosteric ligand binding site and shear motion of the transmembran

74 ple interactions, ligands stabilize both the ligand binding site and the local secondary structure.

75 etection methods to build 3D models, predict ligand binding sites and analyze the effect of amino aci

76 llowed us to create pharmacophore models for ligand binding sites and formulate requirements for thes

77 heories for the predictions of metal ion and ligand binding sites and metal ion-dependent RNA stabili

78 embled including hundreds of type I collagen ligand binding sites and mutations on a two-dimensional

79 physiological processes, but for many GPCRs ligand binding sites and other structural features have

80 ed at protein-protein interfaces and protein-ligand binding sites and uses these characteristics to m

81 deviations occur at specific residues in the ligand-binding site and in the two helical segments that

82 ing is the allosteric regulation between its ligand-binding site and the C-terminal helix (alpha7) of

83 tension resulting in increased access to the ligand-binding site and/or facilitating the conformation

84 : an efficient software tool for identifying ligand-binding sites and predicting pseudo ligand corres

85 ter-aided drug design, we explored potential ligand-binding sites and screened for compounds that cou

86 on is mediated extracellularly by unoccupied ligand-binding sites and that oligomerization organizes

87 ide characterization and analysis of protein ligand-binding sites and their interactions with ligands

88 nto groups based on the conformations of the ligand binding site, and distinct conformers from each g

89 en the myoglobin's buried heme, which is the ligand binding site, and surrounding solvent.

90 ent of beta(2)AR, which establishes multiple ligand binding sites, and its properties were not signif

91 the effects of SNVs on enzyme active sites, ligand binding sites, and various types of post translat

92 et-blocking antibody which binds outside the ligand-binding site, and determined the crystal structur

93 he STAT3 coiled-coil domain (CCD) as a novel ligand-binding site, and we describe a new naphthalene s

94 summarize our current view of the structure, ligand-binding sites, and chloride channel of these rece

95 bles are titration of intracellular ions and ligands, binding sites, and efflux pathways such as thos

96 ed ligand binding sites (LIGBASE), predicted ligand binding sites (AnnoLyze), structurally defined bi

97 targeting PAR1 with an orthosteric-tethered ligand binding-site antagonist results in bleeding, poss

98 nd GLs and that proteins possessing multiple ligand binding sites are able to interact with GLs origi

99 These channels are heteropentamers and their ligand binding sites are localized at the beta+ / alpha-

100 indicate that multiple, distinct, functional ligand binding sites are present on SIRPalpha that may a

101 monovalently in solution, we show that both ligand binding sites are required to efficiently recruit

102 alpha4beta1 and alpha4beta7 shows that their ligand-binding sites are highly conserved.

103 mber of ligands, but in the closed state the ligand-binding sites are inaccessible.

104 ce, such as pockets that often correspond to ligand binding sites as well as protrusions and flat reg

105 and binding in the immediate vicinity of the ligand-binding site as well as at remote sites.

106 ts identified by various approaches, such as ligand-binding sites as observed in experimental complex

107 produced high-resolution images defining the ligand binding site at the atomic level.

108 to concurrently detect and localize multiple ligand-binding sites at single receptor resolution.

109 will also permit the modelling of potential ligand-binding sites at the interfaces between the subun

110 Also, the orthosteric ligand-binding site becomes the initiator region for all

111 loop II protrudes to the M1-mAChR allosteric ligand-binding site blocking the entrance to the orthost

112 toplasmic face of PAR1 without modifying the ligand-binding site, blocking signaling through Galphaq

113 n includes a cupin-like beta-barrel with the ligand-binding site buried at its centre.

114 und in both forms, not in the canonical TetR ligand binding site but rather in a second pocket more d

115 rgo a conformational change that exposes its ligand-binding site, but it is poised to rapidly assembl

116 suggests that their polymorphisms affect the ligand-binding site by changing the hinge angle and the

117 eta(2)AR structures and demonstrate that the ligand binding site can accommodate compounds of differe

118 Our results show that ligand binding sites can usefully be thought of in terms

119 ting" mutations) and is located far from the ligand-binding site, close to the interdomain interface.

120 ology pipeline which combines proteome-scale ligand binding site comparison, protein-ligand docking,

121 hrough parallel computations designed for 3D ligand-binding site comparison and similarity searching

122 The ligand binding site comprises the beta-sheet that forms

123 teric response, occur in the vicinity of the ligand-binding site concomitant with effector binding to

124 site containing D142, and a flexible proton/ligand binding site containing D235 and E327, the contri

125 dicated that desolvation effects in the PBP3 ligand-binding sites contributed significantly to the th

126 conformational exchange for a portion of the ligand-binding site correlate with ligand EC(50) data.

127 ignment of the two modules revealed that the ligand-binding sites could be superimposed and that amin

128 B receptors is limited, with only one other ligand-binding site defined--for the corticotropin-relea

129 The residue composition of a ligand binding site determines the interactions availabl

130 suggest that the level of saturation of the ligand binding sites determines the nature of the P2X7R

131 The location and shape of the ligand-binding sites differ from other G protein-coupled

132 In contrast, NTs that have extracellular ligand-binding sites do not have a similar tendency to a

133 e predictions, and functional annotations on ligand-binding sites, Enzyme Commission numbers and Gene

134 The ability to concurrently search protein-ligand binding sites extracted from the Protein Data Ban

135 Our findings demonstrate an extended ligand binding site for mannosylated ligands and the sig

136 The method is applicable to any purified ligand-binding site for which an appropriate fluorescent

137 l complex, the N-lobe of calmodulin provides ligand-binding sites for channel gating, and that its li

138 The identification of ligand-binding sites from a protein structure facilitate

139 ased algorithm COACH is developed to predict ligand-binding sites from protein sequence or using 3D s

140 cluding gene ontology, enzyme commission and ligand-binding sites from various analogous and homologo

141 ers, namely FTSite, which is used to predict ligand-binding sites, FTFlex, which is used to account f

142 Studies involving a ligand-binding site G131T mutant show that the mutant fo

143 Further constraining the search to the ligand binding site gives up to 48 solutions within the

144 Periplasmic binding protein ligand-binding sites have diversified to bind a wide var

145 orrect ligand: in the context of the overall ligand-binding site, His210 validates the C3 modificatio

146 issociation constant for binding of PQS to a ligand binding site in (PqsRLBD)2 dimers was determined

147 g analysis that revealed an occlusion of the ligand binding site in the alpha2-chimaerin C1 domain, w

148 teraction of the alpha(M)I-domain, the major ligand binding site in the beta(2) integrins, with Plg.

149 inding energetics shows that the location of ligand binding sites in Abeta dimer is dictated by the A

150 ification of tertiary structure elements and ligand binding sites in complex RNAs and in diverse biol

151 cs of proline-rich or phosphorylated peptide ligand binding sites in distal c-Src SH3 and SH2 domains

152 roversy regarding the number and function of ligand binding sites in neurotransmitter/sodium symporte

153 logically correct alignments using predicted ligand binding sites in protein models opens up the poss

154 ing sequence order-independent alignments of ligand binding sites in protein models.

155 Detecting similarities between ligand binding sites in the absence of global homology b

156 rmational changes in the fusion process, and ligand binding sites in their vicinity are anticipated t

157 onstrate a role for GlcNAc in modulating the ligand-binding site in hN1 EGF12, resulting in an increa

158 uided mutational analysis, we identified the ligand-binding site in HucR.

159 a unique conformation at the backside of the ligand-binding site in proximity to the region at which

160 latory potency is enhanced by unmasking of a ligand-binding site in the C-terminal CCPs 19-20 that is

161 Moreover, we identified a ligand-binding site in the dimer interface, suggesting t

162 alpha/beta subunit interface and not at the ligand-binding site in the inserted ("I") domain of the

163 conservation extending from the orthosteric ligand-binding site in the transmembrane core to the cyt

164 lts to describe the proposed intravestibular ligand-binding site in TRPA1 in detail.

165 Allosteric communication between two ligand-binding sites in a protein is a central aspect of

166 improving prediction or characterization of ligand-binding sites in proteins of unknown function.

167 Computational characterization of ligand-binding sites in proteins provides preliminary in

168 Structural studies of the beta1AR define ligand-binding sites in the transmembrane helices and ef

169 ls common structural rearrangements near the ligand binding site induced by the bound (S)-enantiomers

170 neered form of sTie2, which presents dimeric ligand binding sites, inhibits Angpt1 signalling at seve

171 nt effects were investigated to maximize the ligand-binding site interactions in the protease active

172 fers the possibility of favorably modulating ligand-binding site interactions, physicochemical proper

173 vealed important molecular insights into the ligand-binding site interactions, which may account for

174 evealed important molecular insight into the ligand-binding site interactions.

175 rovide intriguing molecular insight into the ligand-binding site interactions.

176 rovided critical molecular insights into the ligand-binding site interactions.

177 CD is similar to other Class B GPCRs and the ligand binding site is similar to the binding site of th

178 tramolecular communication between the three ligand binding sites is conserved in the Kinesin-5 famil

179 Identification of protein-ligand binding sites is critical to protein function ann

180 The large-scale comparison of protein-ligand binding sites is problematic, in that measures of

181 Locating a ligand-binding site is an important first step in struct

182 ed primary cyclic AMP-binding site, a second ligand-binding site is nestled between the N-terminal do

183 subunits to complementary components of the ligand-binding site is nonequivalent.

184 ostery in proteins in which evolution of the ligand-binding site is occurring.

185 Each of these ligand-binding sites is bonded to a different solvent-ex

186 The detection of ligand-binding sites is often the starting point for pro

187 lemented with a P(proxy) containing a single ligand binding site, is given.

188 and-binding domain (LBD), which contains the ligand-binding site, is coupled to the transmembrane dom

189 Mutations at the ligand binding sites (LBSs) can influence protein struct

190 ure alignments (DBAli), structurally defined ligand binding sites (LIGBASE), predicted ligand binding

191 Ligand binding site mapping experiments showed that DV1

192 The elucidation of the ligand binding site may be useful in analyzing likely bi

193 ructure, cholesterol localization within the ligand binding site, membrane association, and, potentia

194 We tested whether the two ligand binding sites might overlap by examining whether

195 on posttranslational modifications of their ligand binding sites, Notch proteins have linked their f

196 l relevance of the dimer-specific peripheral ligand-binding site observed in certain CYP3A4 structure

197 The planar ligand binding site, observed in a parallel orientation

198 The ligand binding site of CD163 has previously been shown t

199 The ligand binding site of Cys-loop receptors is formed by r

200 Molecular docking studies suggested that the ligand binding site of PEDF-R interacts with the neurotr

201 ptor signaling by binding to the orthosteric ligand binding site of the AT1 receptor and promoting co

202 These residues thus form part of a novel ligand binding site of the insulin receptor.

203 13-carotenone can interact directly with the ligand binding site of the retinoid receptors.

204 are juxtaposed to form, at least in part, a ligand binding site of the sigma-1 receptor.

205 peller domains of LRP5/6 and showed that the ligand binding site of the third LRP5/6 beta-propeller d

206 The composition of the ligand binding site of this receptor is unclear, since n

207 ntial allosteric paths between catalytic and ligand binding sites of hPDI.

208 n and allosteric interactions between remote ligand binding sites of the protein.

209 cts with a conserved tyrosine residue in the ligand-binding site of a subset of iLBPs.

210 ition of seven transmembrane helices and the ligand-binding site of an important G protein-coupled re

211 elative positions of various residues in the ligand-binding site of any ligand-receptor complex, and

212 C sequence (the specificity loop) within the ligand-binding site of beta3 plays a role in FGF1 bindin

213 allelic polymorphism at sites distal to the ligand-binding site of KIR2DL2/3 has diversified this re

214 ther than the conserved aspartic acid at the ligand-binding site of M(1) and M(2) receptors.

215 ion whereby a sequence motif within the PxxP ligand-binding site of the p115 RhoGAP SH3 domain occupi

216 The two most common are binding to the ligand-binding site of the receptor and, conversely, bin

217 ithin the area that corresponds to the rigid ligand-binding site of these bona fide folate receptors.

218 Herein, we compare in silico the ligand-binding sites of 28 human "side-effect" targets t

219 e postsynaptic membrane surface whenever the ligand-binding sites of their synaptic receptors are bur

220 odulating polycyclic aromatic small molecule ligand binding sites on Abeta monomer using immunostaini

221 Ligand binding sites on acetylcholinesterase (AChE) comp

222 elation studies on T1R2/T1R3 showed multiple ligand binding sites on both subunits.

223 e provide evidence for separate and specific ligand binding sites on CXCR4.

224 Aggretin thus presents two ligand binding sites on one surface and can therefore cl

225 tion networks, as well as in detecting small ligand binding sites on protein structures.

226 The success rate for locating protein-ligand binding sites on protein surfaces using this new

227 Both LD motifs can target two ligand binding sites on Pyk2-FAT.

228 termed pMD-membrane, to identify allosteric ligand binding sites on the G12D and G13D oncogenic muta

229 Furthermore, we review eight characterized ligand binding sites on the Na(v) channel alpha subunit.

230 r interaction using antibody targeted to the ligand-binding site on IP3R, blocked plasma membrane acc

231 work is to identify a biologically relevant ligand-binding site on PEDF-R.

232 e binding sites for these effectors, and the ligand-binding sites on different subunits could influen

233 binding to LenA, which suggests overlapping ligand-binding sites on the bacterial receptor.

234 provided additional clues to localization of ligand-binding sites on the protein surface.

235 moothened, a GPCR that contains two distinct ligand-binding sites: one in its TMD and one in the CRD.

236 y, specifically, and reversibly to a defined ligand-binding site (or sites) on the TLR3 ectodomain (T

237 on a non-redundant set of about 20,000 known ligand-binding sites, or pockets, of proteins.

238 The protein consists of a ligand binding site, partially overlapping with a winged

239 luding a potential alternative QS-modulatory ligand binding site/partner) that provide new, and unexp

240 for domain prediction; and FunFOLD 1.0, for ligand binding site prediction.

241 Here, FINDSITE, a method for ligand-binding site prediction and functional annotation

242 Protein ligand-binding site prediction is highly important for p

243 Most ligand-binding sites prediction methods use the protein

244 s could greatly assist the classification of ligand-binding sites, prediction of protein molecular fu

245 OR was ranked as the best method for protein-ligand binding site predictions.

246 ust method for future evaluations of protein-ligand binding site predictions.

247 The structures reveal two distinct ligand-binding sites, providing atomic details of P2Y1R'

248 derived material that is predicted to affect ligand binding sites proximal to glycans.

249 rangement of three different residues in the ligand-binding site: R92 (loop D), N128 (loop A), and E2

250 ed on the preferences of amino acids for the ligand-binding site (RA) and proposed the propensity for

251 demonstrate a new robust approach to protein-ligand binding site recognition, which is ready for geno

252 he consistent structural alignment of 57 PDE ligand binding site residues enables the systematic anal

253 contains a consistent alignment of 85 kinase ligand binding site residues that enables the identifica

254 In addition, Mg(2+) ligand binding site(s) indicated by the structural analy

255 176-194) regions are involved in forming the ligand binding site(s).

256 ation by WFA via targeting the conserved WFA-ligand binding site shared among type III IFs promotes f

257 at supports local sequence order independent ligand-binding-site similarity searching.

258 larity can be established by detecting their ligand-binding-site similarity.

259 e a web application for querying the PDB for ligands, binding sites, small 3D structural and sequence

260 e docking of 7alpha,25-OHC into the putative ligand binding site, so that the hydroxyl groups interac

261 ng mouse strain or alternatively used a CD28 ligand-binding site-specific mouse anti-mouse mAb blocki

262 tes enforce specificity independently of the ligand-binding site, such that either one may be rationa

263 tor mutations located near and away from the ligand-binding site suffices to switch the binding speci

264 te are clustered in a region adjacent to the ligand-binding site, suggesting that this region acts as

265 The discrete modification of a small set of ligand binding sites suggests Au(102)(p-MBA)(44) as a po

266 ditionally, the structures revealed a second ligand-binding site suitable for targeting by novel phar

267 explanation of how cAMP gains access to the ligand binding sites that, in the crystal structure, are

268 etwork of conserved water molecules near the ligand-binding site that are important for activation by

269 n-haemoglobin (HpHb), revealing an elongated ligand-binding site that extends along its membrane dist

270 drugs targeting the endogenous (orthosteric) ligand-binding site that include the ability to sculpt c

271 g from other family members in the number of ligand binding sites, the diversity of bound ligands, an

272 The PDK1 kinase domain has at least three ligand-binding sites: the ATP-binding pocket, the peptid

273 We identify two distinct and overlapping ligand binding sites; the first one is broader and consi

274 We propose that SAM enters the ligand-binding site through the "J1/2-J3/4" gate and "lo

275 alpha/beta subunit interface overlapping the ligand-binding site thus indicating that the compound mu

276 ts structural information from a boron-based ligand binding site to a spectroscopic reporter located

277 r long distances in integrins, 40 A from the ligand binding site to the opposite end of the betaI dom

278 ropagation of conformational change from the ligand-binding site to a distal functional site.

279 ransmission of conformational changes at the ligand-binding site to the remote helix-loop-helix exten

280 The substitution pattern of the three ligand binding sites, together with the kinetic stabilit

281 structural homologs, mapping of cavities and ligand binding sites, transmembrane regions and protein

282 ve discovered that binding of choline at the ligand-binding site triggers conformational changes in t

283 rescence, and fluorescence quenching), (iii) ligand binding site [Trp response to ligands, peptide cr

284 The identified ligand binding sites were also confirmed by a separate f

285 complexes in regions of Hsp90 remote to the ligand-binding site were observed indicating long-range

286 previously labeled by the distances between ligand binding sites, were isolated independently by con

287 ransmembrane domain of SMO harbours multiple ligand binding sites, where SANT1 binds at a deeper site

288 342A may form a distant part of the putative ligand-binding site, whereas F358A is likely to be in a

289 mber of basic amino acids that form a common ligand binding site, which indicated that these interact

290 cture of known agonists and our model of the ligand binding site, which was validated by mutagenesis.

291 form for most proteins containing a specific ligand binding site, which would be useful as a simple a

292 capping movement of the loop C region of the ligand-binding site, which ultimately triggers channel g

293 natural carrier protein possessing multiple ligand binding sites with a plasma half-life ~19days, fa

294 r identifying the best of top five predicted ligand-binding sites with a ranking accuracy of 76.0%.

295 We show that AutoSite identifies ligand-binding sites with higher accuracy than other lea

296 These studies identify three separable ligand binding sites within GPR84 and suggest that if me

297 of multiple opposing endpoints, and multiple ligand binding sites within nuclear receptors also contr

298 Ligand binding sites within proteins can interact by all

299 Potential ligand-binding sites within the epidermal growth factor

300 ng input of thermal energy into the flexible ligand binding sites, without local heating of the rigid