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1 nor-acceptor building block into the polymer main chain.
2 the redox state of ferrocene in the polymer main chain.
3 carbene (NHC) orthogonally connected to its main chain.
4 15), while the remaining contacts are to the main chain.
5 dergoing a change in the overall fold of the main chain.
6 group attached to the CoNP colloidal polymer main chain.
7 Tra1 enabled tracing of the majority of its main chain.
8 of bonds orthogonal to an elongated polymer main chain.
9 onfiguration between the side chains and the main chain.
10 arity primarily due to the trajectory of the main chain.
11 nhancing electronic delocalization along the main-chain.
12 table to the formation of polarons along the main chains.
13 he hydrogen-bonding interactions between the main chains.
14 Phe(B25), which mimics the Phe(B24) side and main chains.
15 nyl-alpha-aminoamide-substituted polypeptide main chains.
17 a canonical conformation in which the ligand main chain adopts an extended beta-strand conformation b
18 sp174 form ion-pairing interactions with the main chain alpha-carboxyl and alpha-amino-groups, respec
19 minus to investigate whether the polypeptide main chain amide bonds in the N-terminus of SDF-1alpha p
20 ng and internalization is dependent upon the main chain amide bonds in the N-terminus of SDF-1alpha.
22 n chain carbonyl of the P(5) residue and the main chain amide of amino acid 137 of the protease, whic
23 firms that the oxyanion is stabilized by the main chain amide of Ser-201 and by the side chains of Hi
25 ative oxyanion hole that is constituted of a main-chain amide (Ser-201) and two conserved side chains
30 enzyme, allowing a hydrogen bond between the main-chain amide of residue Trp141 and the carboxylate o
32 h known Raman tensors for modes of the pVIII main chain (amide I) and Trp and Tyr side chains to reve
34 ive site, was bound by hydrogen bonds to two main-chain amides and to two basic residues, H129 and R1
35 NaAD are recognized by interaction with the main-chain amides of Thr85 and Tyr117, a positive helix
37 most of the SLC5 family, interacts with the main chain amino group of G444, capping the alpha-helix
39 e apolar domain consists of a perfluorohexyl main chain and a butyl hydrogenated branch as a side cha
40 accommodated by local shifts of the protein main chain and by adoption of alternative side chain rot
41 binding to the MHC, repositions the peptide main chain and generates subtly enhanced interactions be
42 wo-dimensional (2D) pi-conjugation along the main chain and in the lateral direction, leading to high
43 attention to the general orientation of the main chain and mutual spatial arrangement of secondary s
44 re linked by hydrogen bonds between both the main chain and side chain amides, and side chains point
46 This is most likely due to the fact that the main chain and side chain of Asp46 form a characteristic
48 affold with repeating S = 1/2 centers in the main chain and suggest antiferromagnetic interactions be
49 onformations differ via a translation of the main chain and the corresponding side chains in the 5- t
50 ortant interactions between the PTS1 peptide main chain and up to five invariant Asn side chains of P
51 drical copolypeptide brushes, where both the main chains and side chains can be prepared with control
52 eals sinefungin-specific polar contacts with main-chain and side-chain atoms that can explain the 3-f
54 Both binding events lead to perturbation of main-chain and side-chain dynamics at sites distal to th
56 t rely on arrays of basic residues; instead, main-chain and side-chain nitrogen atoms and two calcium
57 ctural metamorphosis conserves the number of main-chain and side-chain to main-chain hydrogen bonds a
59 of tacticity, heavy atom substitution on the main chain, and chain helicity on the depolarization beh
60 alpha analogues with a modified N-methylated main chain at position 2, 3, or 5 retain significant CXC
63 nformation regarding the displacement of the main chain atoms that form the oxyanion hole and movemen
64 bond cysteines coordinating the AMP with its main chain atoms, a nucleotide-binding motif that appear
68 alogs show very similar interactions for the main-chain atoms and the conserved P1 Asp and P4 Asp, wh
69 actions while water molecules cross-link the main-chain atoms of alpha-synuclein to atoms of NbSyn2,
70 4017 forms hydrogen bonds with the conserved main-chain atoms of Asp29 and Asp30 of the protease.
72 A) showed differences in the position of the main-chain atoms of residue 82 compared to PR structure
74 positions form at least one hydrogen bond to main-chain atoms that are not involved in hydrogen bonds
75 through formation of a beta-zipper involving main-chain atoms, burying an important hydrophobic surfa
81 rotates approximately 180 degrees about the main chain axis, requiring surrounding side chains to re
83 estigated the impact of threonine side-chain/main-chain backbonding on the backbone dynamics of the a
84 erchain interaction only through the protein main chain, beta-carbon, or associated hydrogen atoms.
85 is and characterization of a novel series of main-chain boron-containing conjugated polymers (CPs), b
86 BPAs), which represent the first examples of main-chain boron-containing CPs without aromatic moietie
87 es (AXOS) having 2-10 xylose residues in the main chain but no unsubstituted xylooligosaccharides (XO
89 a methyl group at the beta carbon along the main chain can drastically affect selectivity, but its i
91 teractions of Arg130, Glu86, Arg135, and the main chain carbonyl groups of Cys132 and Leu55 appears t
92 sed tendency for the electron density of the main chain carbonyl groups within alpha-helices to be po
93 otassium ion is directly coordinated by five main chain carbonyl groups, and we show this site is ess
96 en the phenolic hydroxide of the SHA and the main chain carbonyl of Pro132, between the carbonyl oxyg
97 new hydrogen-bonding interaction between the main chain carbonyl of the P(5) residue and the main cha
101 e SAM headgroup (H(3)C- and/or HO-) near the main chain carbonyl oxygen of Cys153 and that Phe88 (ana
102 ne (TM) alpha-helix 2, hydrogen bonds to the main chain carbonyl oxygen of Ile-259 on TM alpha-helix
103 We have surveyed the bridging of pairs of main chain carbonyl oxygens by cations or by delta(+) hy
104 hored by halogen bonding of an iodine with a main-chain carbonyl and (ii) an acetylene linker, enabli
105 When the activated asparagine attacks its main-chain carbonyl carbon, the resulting oxyanion is st
106 sidechains, a water molecule, a serine and a main-chain carbonyl in the unwound stretch of trans-memb
107 no moiety participates in three H-bonds: two main-chain carbonyl oxygen atoms (from R194 itself and f
108 t to the intracellular side, is made of four main-chain carbonyl oxygen atoms and four threonine side
111 participates in Ca(2+) coordination with its main-chain carbonyl oxygen, and this function is not exp
112 These macromolecules can be transformed into main-chain cationic polymers upon quaternization of the
113 ried Ser238 side-chain hydrogen bonds to the main-chain CO of Asn170 on the Omega loop, that is unalt
114 s--Textal, Resolve and ARP/WARP--in terms of main chain completeness, sidechain identification and cr
115 which share common features: (i) a galactan main chain composed of two 1-->3 beta-linked trigalactos
118 set of PDZ domains bind peptides with a bent main-chain conformation and the specificities of these n
119 dicted side-chain packing interactions and a main-chain conformation indistinguishable from the wild-
121 domains, but the C(alpha) domain exhibits a main-chain conformation remarkably different from those
123 simulation has not only reached the correct main-chain conformation, but also a very high degree of
125 AP-1 appears to be facilitated by a strained main-chain conformation, which suggests a potential role
127 y toward Ins(1,2,4,5,6)P5 These features are main-chain conformational differences in loops adjacent
130 ed in the structure, and there are alternate main chain conformations for the magnesium positioning l
132 2.0-A-resolution structure reveals canonical main-chain conformations for the V(alpha), V(beta), and
134 ems, the effects of fluorine substitution on main-chain conformations, packing, and electronic coupli
135 in a pocket on the proteasome surface using main chain contacts of its C-terminal residues and uses
137 reactive sites, low toxicity, and controlled main-chain degradability has not been realized, yet this
138 t intermolecular interactions induced by the main-chain deuteration are shown to change the film crys
141 tereoelectronic effects that preorganize the main-chain dihedral angles in the conformation found in
145 drogen bond, apparently caused by changes in main chain dynamics, provide a mechanism for the long di
146 ns from molecular dynamics indicate that the main-chain dynamics of the protein show little variation
147 toconvertible class of FPs, a light-mediated main chain elimination reaction partakes in the formatio
149 e helix with insignificant deviations to its main chain, even though 2/3 of the residues are nonnatur
150 o Pro in order to test the impact of reduced main chain flexibility at the putative hinge position.
153 tiation and control of the polymerization of main chain fluorinated monomers as exemplified by vinyli
156 25; alpha7, M131-E141) that adopt an overall main-chain fold similar to that of PBPs found in Anthera
158 philic polymer with cleavable side chain and main chain functional groups has been designed and synth
159 N-alkyl alpha-bisimines were employed as main-chain functional groups in acyclic diene metathesis
160 nd relatively tolerant of alterations to the main-chain functional groups in order to achieve this sp
161 ituted proline amino acids, with the peptide main chain functioning to "protect" the proline amino an
162 the active site hydrogen-bonding network and main-chain geometry at Asp120, a key component of the bi
163 Thus, the force does not directly break the main chain H-bonds: it destabilizes them in such a way t
164 Recent studies suggest the dominant role of main-chain H-bond formation in specifying beta-sheet top
165 f the design and supported the importance of main-chain H-bonds in determining beta-sheet topology.
167 due to effects of local sequence sterics and main-chain hydration on the persistence length of the ch
171 a strands that is centered near a bifurcated main chain hydrogen bond interaction between these two s
172 ha-helix in which the N-terminal i and i + 4 main chain hydrogen bond is replaced with a carbon-carbo
173 ses have a cross beta-sheet structure, where main chain hydrogen bonding occurs between beta-strands
174 rils have a cross-beta-sheet structure where main chain hydrogen bonding occurs between beta-strands
177 air, only one of the residues is involved in main chain hydrogen bonding with the strand containing t
178 accommodate a wide range of residues, while main chain hydrogen bonds may help dictate substrate-bin
179 I, and the G440A mutation, which abolishes a main-chain hydrogen bond associated with the interaction
180 ificial alpha-helices in which an N-terminal main-chain hydrogen bond is replaced by a carbon-carbon
183 s the number of main-chain and side-chain to main-chain hydrogen bonds and the number of fully buried
185 hydrophobic interactions while cross-strand main-chain hydrogen bonds manifested the ordered oligome
186 d an NMR-based site-specific analysis of the main-chain hydrogen bonds that stabilize its native conf
190 formed by the beta-sheet extension along the main-chain hydrogen-bond direction, whereas the other ha
191 s for the generation of all the chirality of main chain hydroxyaldehyde, while the appended side-chai
192 ed by replacing an N-terminal intramolecular main chain i and i + 5 hydrogen bond with a carbon-carbo
193 lated rhamnose as the capping residue of the main chain, (ii) a hyperbranched fucose unit, and (iii)
194 s mainly from the exceptional ability of the main chain in a structurally relaxed beta-conformation t
196 egy, we show that complete assignment of the main chain (including prolyl residues) can be achieved w
199 that amyloid formation arises primarily from main chain interactions that are, in some environments,
200 ADP is tightly bound through side-chain and main-chain interactions, whereas at the other two sites
205 particles, of controlled diameter, made from main-chain liquid crystalline polymers using a mini-emul
206 mposed of d(5)-vanadium metal centers in the main chain, making it a rare example of a spin-carrying
207 n its native state, the coupling between the main-chain (MC) motions [represented by coarse-grained d
210 s a function of temperature reveals that the main chain melting transition and the lamellar-to-invert
211 migration insertion polymerization (MIP) for main chain metal-containing polymer (MCP) synthesis.
213 ow that when the H-bonding capability of the main-chain N-H of the conserved glutamine is eliminated
214 rovided the highest affinity at pY+1 and its main chain NH is involved with a hydrogen bond with Stat
215 scribed in the accompanying paper, where the main-chain NH groups point inwards relative to the ring
216 catalysis, such as a hydrogen bond between a main chain nitrogen atom and the flavin redox center (N5
217 te to form hydrogen bond interactions to the main chain nitrogen atoms of Cys356 and Leu314, and hydr
218 site contains an oxyanion hole formed by the main chain nitrogen atoms of Thr-80 and Phe-79 and the s
220 cies, in which tryptophan cross-links to the main chain nitrogen of the adjacent glycine residue to f
221 le in active Site B the 2-nitro contacts the main chain nitrogen of Thr41 and the 4-nitro group the L
222 ol oxidase has revealed an unusual elongated main chain nitrogen to hydrogen bond distance positionin
223 the side-chain oxygen atom of Asp169 and the main-chain nitrogen of Arg112 binds together the incomin
225 ized through measurement of enzyme kinetics, main chain NMR relaxation, X-ray crystallographic studie
226 e bound DRV lacks one hydrogen bond with the main chain of Asp30 in PR(L76V) relative to PR, possibly
227 lose, especially xylan that is composed of a main chain of beta-1,4-linked xylopyranoside residues de
229 The insertion of trisubstituted ureas in the main chain of N,N'-linked oligourea foldamers locally im
230 med intrinsic localized modes (ILMs), of the main chain of proteins based on all-atom molecular dynam
231 the E-dimer interface, including the exposed main chain of the E fusion loop and the two conserved gl
232 al change requires modest adjustments to the main chain of the heme crevice loop and is facilitated b
235 roduction of inhibitor interactions with the main chains of key amino acids and seeking a unique inhi
238 ionalities are orthogonally connected to the main chains of the respective polymers have been synthes
240 ell-established, readily accessible class of main chain organosilicon metallopolymer consisting of al
243 bromine atoms makes polar contacts either to main chain oxygens in the hinge region of the kinase or
244 anscription factor is due in large part to a main-chain perturbation rather than to specific features
247 oactuation within the local structure of the main chain polymer results in a mechanically controlled
248 tives with a poly(vinyl alcohol)MW27kD (PVA) main-chain polymer bearing poly(ethylene glycol)MW2000 (
250 Here we report the synthesis of metalated main-chain polypseudorotaxanes via ring-opening olefin m
251 contrast, foldamers with aryl rings in their main chains possess distinct conformations that may give
252 3S-Flp), like 4S-Flp, should preorganize the main chain properly for triple-helix formation but witho
253 ater flexibility that glycine confers on the main-chain provides no advantage in terms of the persist
254 gesting that both side-chain disordering and main-chain rearrangement play important roles in alterin
256 Arg141, but also requires substantial local main chain rearrangements relative to the structurally h
257 dy of this article is focused on a series of main chain redox and beta-elimination reactions mediated
258 -vis spectra demonstrate that the conjugated main chains remain essentially planar through the alpha
259 ng the primary monomer sequence of a polymer main chain represents a considerable challenge in polyme
260 brillar LCs involves an inducible N-terminal main chain reversal that results in the formation of a p
261 ucture comprises two beta-grasp folds having main chain root mean square deviation (r.m.s.d.) values
262 due loops in the PLOP benchmark, the average main-chain root mean square deviation of the best scored
264 ures are similar to those of native insulin (main-chain root-mean-square deviations (RMSD) of 0.45 an
265 al residues in Elk have significantly higher main-chain root-mean-square deviations than their counte
266 activated mechanophore that does not lead to main chain scission and an elastomeric polyurethane enab
268 onversions of polymers comprising pendant or main-chain secondary amines were observed for an array o
269 hs provide an unbiased method for evaluating main-chain segmental motions; they resolve an apparent d
270 arrangements but also showed movement of the main chain segments that are contiguous with the mutatio
271 cyclic ether groups with a stiff polycyclic main chain, serves as a grafted polymer skin on the Li m
272 te a highly strained disulfide and localized main chain structural changes that presumably account fo
281 een side-chain fluorinated benzyl esters and main-chain terminal arenes, in turn controlling the conf
284 ent: (1) as suggested by informatic studies, main-chain to base hydrogen bonding makes up an importan
285 moiety and the carbonyl of hyp distorts the main-chain torsion angles that typically accompany a C(g
287 n rotation is accompanied by a change in the main chain torsional angles of Asp402, a conserved resid
288 c, much larger than is typically seen in the main chain transition at these anesthetic concentrations
291 and a Gal 6-linked to Gal-1 and Gal-2 of the main-chain trigalactosyl repeats; (iii) a common side ch
294 zes the proper docking of the Ile(181) (P1') main chain, whereas the hydrophobic pockets stabilize th
295 ty destroys or recovers the curvature of the main chain, which demonstrates external control over the
296 train of the substituted ketal groups in the main chain, while for polymers with linear (acyclic) ket
297 n structure calculations revealed a galactan main chain with a reverse turn involving the beta-1-->6
299 ins for solubility, that alternate along the main chain with electron-rich aromatic segments comprisi
300 n to sugar precursors requires the action of main chain xylanases as well as alpha-glucuronidases tha
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