ライフサイエンスコーパス: manually

1 , glycan spectra are predominantly sequenced manually.

2 Two periodontal journals were searched manually.

3 large data sets that are typically analyzed manually.

4 H images are annotated with anatomical terms manually.

5 sible to read and summarize these references manually.

6 ld take a researcher to perform such queries manually.

7 between centers when the assay is processed manually.

8 ce of substantial variability when performed manually.

9 e corresponding genetic change, is performed manually.

10 ing RGCs imaged using DARC have been counted manually.

11 omes) for which MS/MS spectra were annotated manually.

12 Angiograms were assessed manually.

13 se tasks may be labor intensive if performed manually.

14 computer programs and available software, or manually.

15 d and classified individual seals in imagery manually.

16 Other sources were screened manually.

17 n ISA-Tab format on users, who have to do it manually, a process that is time consuming and prone to

18 h monitoring has traditionally been examined manually, a slow and onerous process.

19 When four cases were manually adjusted for the complex anatomy, there was agr

20 GBM sub-compartments were defined manually and automatically using the Brain Tumor Image A

21 Unless they are manually and carefully traced, it has not previously bee

22 Seizure events were confirmed manually and classified as either clinically correlated,

23 Low-threshold channels were selected manually and matched in number and apex-to-base distribu

24 Hippocampal volumes were defined manually and normalized for total intracranial volume.

25 with the variance between samples processed manually and on a DS2 platform (mean difference, 0.02; L

26 ns of interest were drawn around the lesions manually and quantified the uptake of up to 3 lesions pe

27 mber of complex spectra is performed largely manually and therefore represents a limiting step in hit

28 SBP and DBP were measured manually and with a 24-h BP monitoring system on 3 d bef

29 All plaques were segmented manually, and image data information was analyzed using

30 The lesions were segmented manually, and parameters of the homodyned K distribution

31 Tumor volumes were delineated manually, and the input function was image-derived (abdo

32 Kyriacou et al. manually annotated a subset of our recordings and report

33 sis in immunology, we created ImmuneSigDB: a manually annotated compendium of approximately 5,000 gen

34 a F1 score of 59.6 on the test portion of a manually annotated corpus of 320 Medline abstracts, a 4-

35 Our system has been tested on a manually annotated corpus of journal articles related to

36 not replicate this finding and show that the manually annotated data, the original automatically segm

37 ular architecture, and was evaluated using a manually annotated dataset of the University of Pittsbur

38 this task, we introduce two text collections manually annotated for cell line names: the broad-covera

39 38 559 post-translational modifications, as manually annotated from 48 114 publications.

40 e cases and evaluate the results compared to manually annotated references.

41 rms of pixel-by-pixel evaluation compared to manually annotated regions of invasive ductal carcinoma.

42 We also highlight how the user can browse manually annotated updated patches from the Genome Refer

43 The corpus was manually annotated with coreference relations, including

44 d with an automated informatics pipeline and manually annotated.

45 Accurate NER systems require task-specific, manually-annotated datasets, which are expensive to deve

46 itatively evaluating the data often involves manually annotating structures of interest.

47 random sample of 1000 MEDLINE abstracts was manually assessed for reporting of P values and other ty

48 s-sectional area of the trachea was measured manually at 3 predetermined levels (aortic arch, carina,

49 MR elastograms were analyzed manually at two reading centers, and using a new automat

50 However, manually attaching substrates with recently settled cora

51 inically validated as being anaphylaxis were manually blind-coded under ICD-10 and current ICD-11 bet

52 mprove the atomic details in models that are manually built in near-atomic-resolution cryo-EM maps.

53 ata sets had four curation steps including a manually built, comprehensive hierarchical structure of

54 Each entry of ADPriboDB is annotated manually by at least two independent curators from the l

55 sequently, the peptide sequence was obtained manually by ESI-MS spectra of GMPH (KGYSSYICDK) and F-II

56 ese operations are (i) generally carried out manually by experts with limited computer support, (ii)

57 l neurons are attenuated to sounds generated manually by the animals' own behavior.

58 Axial unenhanced CT images were contoured manually by two independent analysts.

59 By manually changing the template sequence, many different

60 A portion containing 521 spectra was manually checked confirming that Glycoforest annotated a

61 ity to catalyze biochemical reactions; it is manually classified by the Enzyme Commission and robust

62 Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled

63 ng traditional query-based search engines to manually collect relevant materials is rather labor inte

64 ce evaluation of these prediction scores, we manually collected three distinct testing datasets, on w

65 Existing platforms rely on knowledge bases manually compiled through a labor-intensive process or a

66 ding painless scrotal swelling, which can be manually compressed after voiding.

67 , we show that deep-learning methods need no manually constructed inputs and yet improve the classifi

68 ts, and rely on a painstaking search through manually constructed nonlinear features.

69 validated, with permission, against Google's manually-constructed knowledge graph and against expert

70 t are most likely to generate hits; however, manually constructing DC libraries is challenging, error

71 with gross tumor and nodal targets were then manually contoured on images from each examination.

72 e resultant deformed ROIs were compared with manually contoured reference ROIs by using similarity co

73 threshold volumes (MTVt, TLGt) and from the manually contoured soft-tissue volumes.

74 rs paddles applied directly to the heart, to manually controlled external defibrillators, to automati

75 (instructed to act in three prescribed ways) manually controlled two systems (1st and 2nd order) subj

76 The PET images were manually coregistered to a MR imaging atlas of the pig b

77 outperforms traditional approaches based on manually crafted features.

78 all the systems satisfying our criterion, we manually create single layer systems and calculate their

79 f clustering results and enables analysts to manually curate and refine cluster assignments.

80 In addition to naming genomic loci we manually curate genes into family sets based on shared c

81 We manually curate molecular details of pathways in these d

82 lecule and peptide ligands is annotated with manually curated 2D chemical structures or amino acid se

83 We manually curated a gold standard set of 132 crosstalking

84 ionship between neuropeptides and cancer, we manually curated a total of 127 human neuropeptide genes

85 , with >95% of relevant published literature manually curated amounting to more than 15,000 journal a

86 cretion Systems (DBSecSys), a compilation of manually curated and computationally predicted bacterial

87 These datasets were manually curated and hierarchically organized based on E

88 Manually curated and predicted scaffold protein data wil

89 phila melanogaster), together with extensive manually curated annotations for each editing site.

90 We further provide a manually curated benchmark dataset that can be used for

91 Using a large manually curated benchmark of 1007 protein domains, we s

92 All data manually curated by the MINT curators have been moved in

93 nd aggregator databases, BorreliaBase serves manually curated comparative-genomic data including geno

94 tes the utility of integrative analysis of a manually curated compendium of genome-wide protein bindi

95 The manually curated condition annotation has been overhaule

96 evaluate the accuracy of the tagger on a new manually curated corpus of 600 Encyclopedia of Life (EOL

97 ere, we present Secmarker, a method based on manually curated covariance models capturing the specifi

98 rs) from various public databases as well as manually curated data from our group and collaborators (

99 The Genomes Online Database (GOLD) is a manually curated data management system that catalogs se

100 e curators and community researchers provide manually curated data to PomBase.

101 The CCGD is a manually curated database containing a unified descripti

102 s System Disease NcRNAome Atlas (NSDNA) is a manually curated database that provides comprehensive ex

103 We previously developed a manually curated database, DBSecSys, of bacterial secret

104 d achieves prediction accuracies of 90% on a manually curated database.

105 nd the area under the curve (AUC) metrics on manually curated datasets confirmed the excellent discri

106 a new reference genome for P. malariae and a manually curated draft P. o. curtisi genome, we are now

107 abase of protein families, containing 14 831 manually curated entries in the current release, version

108 Since extensive and manually curated experimental data about NR ligands and

109 owth conditions and developmental stage were manually curated for each sample.

110 glycomic workflow currently possible and the manually curated fragmentation characteristics presented

111 over 2400 experimentally validated instances manually curated from >2000 scientific publications.

112 aptation in ~1300 virus-interacting proteins manually curated from a set of 9900 proteins conserved i

113 anscription factors, based on validated data manually curated from published literature.

114 Firstly, we used regulatory interactions manually curated from the literature to construct a regu

115 emical-disease and gene-disease interactions manually curated from the literature) are integrated wit

116 sease and gene-disease interactions that are manually curated from the scientific literature by profe

117 Independently, manually curated FS are provided to principle investigat

118 While the manually curated Gene Ontology (GO) is widely used, infe

119 ,328 bp continuous gap free sequence with 35 manually curated genomic loci of which 23 were considere

120 of GlycoSeq were highly consistent with the manually curated glycan structures.

121 introduced annotation extensions that enable manually curated GO annotations to capture additional co

122 The algorithm was validated against manually curated images of pavement cells of widely vary

123 Domain Database alignments, which have been manually curated in the light of available crystal struc

124 rofile hidden Markov models constructed from manually curated IS elements.

125 e the performance against a gold standard of manually curated labels.

126 This is achieved by combining a manually curated list of bacterial genomes from human fa

127 Commercial tools based on large, manually curated networks of causal relationships offeri

128 l machinery captured by both data-driven and manually curated ontologies.

129 SCOP is a manually curated ordering of domains from the majority o

130 Rs were predicted in the FG proteome using a manually curated pipeline dedicated to the identificatio

131 orithm and a fitness function trained on the manually curated PPINs, we show that IIN topology can be

132 nsupervised training which makes unnecessary manually curated preparation of training sets.

133 nd domain architecture is calibrated against manually curated protein interaction data to define func

134 Significant genes are mapped to our manually curated protein-protein interaction database to

135 Here, we present a census of 1,542 manually curated RBPs that we have analysed for their in

136 db.org, provides users with a comprehensive, manually curated reference database of 287 eukaryotic ln

137 und information and included hundreds of new manually curated references to literature.

138 ata content containing information from 2219 manually curated references.

139 The Network of Cancer Genes is a manually curated repository of cancer genes derived from

140 ehensive Antibiotic Resistance Database is a manually curated resource containing high quality refere

141 LASS, which aims to provide a comprehensive, manually curated resource for experimentally validated G

142 tabase has created a new, free, open-source, manually curated resource, the Complex Portal (www.ebi.a

143 We have collected manually curated sequence alignments for >3000 sequences

144 The manually curated signatures are used as a training set t

145 ng bacteria, viruses, archaea and fungi with manually curated species classification and enhanced sam

146 re unique molecules (non-redundant) from 377 manually curated studies of 230 publications.

147 The metadata were manually curated to ensure annotation consistency.

148 we have systematically analyzed over 10,000 manually curated toxin sequences using sequence clusteri

149 igh-throughput immuno-profiling study on all manually curated toxins from Dendroaspis species and sel

150 We have manually curated VFs from six prioritized NIAID (Nationa

151 When manually curated, 87% of these additional flagged featur

152 Study data provided to CEBS are manually curated, accessioned and subject to quality ass

153 experiments from ArrayExpress that have been manually curated, annotated with Experimental Factor Ont

154 g studies from ArrayExpress, which have been manually curated, annotated with ontology terms, checked

155 This manually curated, literature-derived database, comprisin

156 alog of worldwide genome projects, GOLD is a manually curated, quality-controlled metadata warehouse.

157 crobe Communities (HPMC) database provides a manually curated, searchable, metagenomic resource to fa

158 All data are manually curated.

159 t be time-consumingly visually inspected and manually curated.

160 In total 20 models were manually curated.

161 to systemizing ageing resources, providing a manually-curated and readily accessible source of age-re

162 G Models contains more than 75 high-quality, manually-curated genome-scale metabolic models.

163 We validate EBC's performance against manually-curated sets of (1) pharmacogenomic relationshi

164 yping, which provides a better separation of manually defined eye colour categories.

165 based segmentation method by comparing it to manually defined sub-volumes by experienced radiologists

166 0.77 and 0.65, CI: 0.54-0.76), comparable to manually defined volumes (0.64, CI: 0.53-0.75 and 0.63,

167 uence; all of these parameters are typically manually defined.

168 All individual drusen in each B-scan were manually delineated by experts certified by a reading ce

169 target-to-background ratios (TBR) defined on manually delineated coronary plaque lesions were compare

170 The CRVT location was manually delineated in separate projection images of the

171 All individual IRC and SRF lesions were manually delineated on each of the 128 B-scan sections o

172 me-radioactivity curves were extracted in 11 manually delineated organs and corrected for injected ac

173 lumes showed moderate to high agreement with manually delineated volumes (range (r): 0.4 - 0.86).

174 ardized uptake value (SUV) was determined by manually delineating the aorta in the low-dose CT.

175 The manually derived core contains 3 million data from 77,00

176 The mid-stroma was manually dissected and an isolated donor Bowman layer wa

177 Fiber fragments were manually dissected, cultured, and evaluated for expressi

178 or readers to verify reproducibility without manually downloading and rerunning code and can provide

179 and SUVs were obtained from tumor lesions by manually drawing volumes of interest in the malignant ti

180 , substantia nigra (SN), and cerebellum were manually drawn on coregistered MR images.

181 Manually drawn regions of interest around tumors and adj

182 maximum standardized uptake values (SUVs) in manually drawn regions of interest were calculated.

183 equenced, de novo assembled, and extensively manually edited and annotated the genomes of 93 S. cerev

184 avoiding the tedious and error prone task of manually enumerating all species and reactions that can

185 experiments, three NLP rules were tested and manually evaluated by three annotators.

186 We manually evaluated the precisions of the learned pattern

187 anization, and ISI-Proceedings databases, by manually examining the references of the original articl

188 Among 99 manually extracted full-text articles with data, 55 repo

189 Next, all found and manually filteredpublications are classified according t

190 rd-design specific Watson-Crick base pairing manually for any given target structure.

191 We then searched manually for disease prevalence, targets, and human reso

192 o-demographic characteristics were extracted manually from historical civil registers for 5,671 child

193 ancer genes, mutation information is curated manually from the scientific literature, allowing very p

194 Positive findings were filtered manually generating a suspect list of 108 photoproducts.

195 Retinal images were manually graded following a standard national protocol f

196 3-dimensional (3D) volume AS-OCT scans were manually graded to evaluate for the presence or absence

197 t commercial category of oil quality in both manually harvested olives and in mechanically harvested

198 ntify several hundred isotope distributions, manually identify and quantify proteins from 1:1, 3:1, a

199 rained by the costs and time associated with manually identifying cases and abstracting clinical data

200 ve defined a bioinformatics-based method for manually identifying stabilizing substitutions in NBD2,

201 y date or language restrictions and searched manually in regular journals and unpublished studies.

202 adaptation and postadaptation phase required manually indicating the horizontal size of each target b

203 The headspace N2O was manually injected into an OA-ICOS isotopic N2O laser ana

204 All the complexes were manually inserted into the minor groove as the starting

205 This is currently accomplished by manually inspecting and inferring the biological consequ

206 ver, performing such collection and analysis manually is a tedious and time-consuming process.

207 Flagging and removing such false peaks manually is a time-consuming task and prone to human err

208 egions of interest (ROIs) of the murals were manually labeled and grouped into four levels: normal, s

209 provide an evaluation of its accuracy using manually labeled data.

210 nd in a publicly available benchmark dataset manually labeled for semantic similarity and relatedness

211 te provides the two study datasets including manually labeled ground truth, initial seeds and the cra

212 cross a total of 47 images and nearly 17,700 manually labeled nuclei serving as the ground truth, MPA

213 boggle's algorithms using the largest set of manually labeled, publicly available brain images in the

214 evant gene sets, which are currently curated manually, limiting their availability and accuracy in ma

215 Manually locating data on phenotypic variation within th

216 cer phenotypes is currently mostly performed manually, making it difficult to correlate phenotypic da

217 in all GWASdb v2 collected studies; (iii) We manually mapped 1610 GWAS traits to 501 Human Phenotype

218 Electrocardiograms were manually measured and visually coded using criteria of 0

219 SFCT was manually measured by 2 ophthalmologists using manufactur

220 urement of which was confirmed by additional manually obtained blood samples.

221 fully automated via the ROSIE web server or manually on a computer with user control of individual s

222 to cross-linked cDNA amplicons and sequenced manually on a confocal microscope.

223 simple, negative pressure-driven device with manually operated magnetic valves was developed and the

224 erated in Applied Biosystems(R) (ABI) either manually or automatically by providing panels or bins.

225 we construct a workflow that can be followed manually or by a robot to probe the envelope of both eve

226 ozymes have been designed in the past either manually or by SELEX (Systematic Evolution of Ligands by

227 kling, pigmented spots) were assessed either manually or digitally.

228 oaded with pyrene or phenanthrene and ground manually or in a ball mill for short periods of time.

229 The process can be implemented manually or through automation.

230 atistical analysis of measurements performed manually or using a robotic system.

231 ria as bright spots that were easily counted manually or using an automated script for user-independe

232 Infarcts were manually outlined and images were transformed into stand

233 The infarcts were manually outlined and transformed into stereotaxic space

234 When performed manually, paired genome and transcriptome sequencing lib

235 The striatum was manually parcellated into its associative and sensorimot

236 ur software algorithm compare favorably with manually performed clinical measurements.

237 The fundamental difficulty of manually predicting emergent behavior of even simple net

238 nate eluent systems are possible compared to manually prepared carbonate-bicarbonate eluents and with

239 of their biological features compared to the manually processed colonies using standard molecular app

240 However, manually processing acquired UHPLC-DAD-HRAM/MS(n) data f

241 play less line-to-line variation than either manually produced lines or lines produced through automa

242 The network was manually reconstructed through extensive biocuration to

243 total of 240 intracortical connections were manually reconstructed within a common neuroanatomic fra

244 We manually reexamined Stern's raw song recordings and anal

245 Operators should inspect and manually refine OCT retinal layer segmentation when asse

246 Manually refining thousands of amino acids - typical in

247 ically limited by the ubiquitous practice of manually replacing patch-clamp pipettes after each recor

248 These steps can be performed either manually (requiring significant time and labor) or autom

249 age registration and ordering are often done manually, requiring a significant amount of expertise wi

250 First, two human annotators manually reviewed a purposeful training sample (n=360) a

251 Selected studies from this group were then manually reviewed for possible inclusion in this review.

252 t flagged during the initial screen was then manually reviewed to confirm whether an iAE occurred.

253 All patients were manually reviewed using a structured protocol in order t

254 In 1000 abstracts that were manually reviewed, 796 were from articles reporting empi

255 ference lists of the identified studies were manually reviewed.

256 and 20% of cases with related diagnoses were manually reviewed.

257 These were then manually sampled by an operator (semiautomatic analysis)

258 Seven source organs were defined manually, scaled to a sex-specific reference, and reside

259 The results support manually scored L3 testing in routine practice.

260 ional approaches to analyze grooming rely on manually scoring the time of onset and duration of each

261 Of 559 citations identified and manually screened, 161 were selected as suitable for the

262 ished from Jan 1, 1998, to Dec 31, 2011, and manually search reference lists and contacted experts to

263 Additionally, we manually searched bibliographies for related references.

264 We also manually searched reference lists of key articles retrie

265 tomized script, coded in Matlab, was used to manually segment and measure multiple BMO-based paramete

266 In each post-TE OCT volume, 4 tissues were manually segmented (prelamina, choroid, sclera, and lami

267 ained using CellECT are compared to those of manually segmented cells.

268 tic segmentation results or direct import of manually segmented cells.

269 evaluated the segmentation accuracy against manually segmented datasets using two metrics.

270 Hippocampal subfields were manually segmented from 600mum isotropic resolution susc

271 y the pairwise comparisons of MERs using 106 manually segmented ground-truth cells with different siz

272 o perform comparably with ROP experts, using manually segmented images.

273 Choroidal neovascularization (CNV) was manually segmented on OCTA images and compared between t

274 The lungs were manually segmented on the ventilation-weighted images to

275 Manually segmented prostate capsules were aligned to a B

276 ons, seen as hypointensities on MPRAGE, were manually segmented.

277 st current methods rely on features that are manually selected based on knowledge about protein struc

278 RNFL; the fovea and optic nerve center were manually selected.

279 The renewal consisted in manually sliding metal-coated microwires across a channe

280 er, a fluidic switch that can be actuated by manually slipping a piece of paper.

281 elow 9.0%, which was equivalent to that of a manually spotted volume with a pipet.

282 r routine standard of care; 250 of them were manually supplemented with concentrations from <1 to 100

283 s first extracted from the thorax by marking manually the regions of interest on the computer, and th

284 and (2) model parameters are typically tuned manually to subjectively match a desired output.

285 All cephalograms had been manually traced by two experienced orthodontists with 19

286 ly transferred graphene, as compared to that manually transferred, is demonstrated by the optical and

287 was punched, stripped (8.5 mm diameter) and manually tri-folded with the endothelial side inward.

288 such constructs has traditionally been done manually using a DNA sequence editor which becomes error

289 We present a method for forming them manually using a Teflon tube attached to a syringe pump;

290 Yet dilution is mostly performed manually using large-volume manual liquid-handling tools

291 The measurements of FA index were performed manually using ROI (region of interest) tool.

292 ylation level changes were further confirmed manually using several sets of cancer DNA.

293 All these signatures are unique and are manually validated for quality.

294 The p53 pathway results were manually validated in the literature.

295 s the first global registry that holds both, manually validated scientific and ethical information on

296 s (DRESS) syndrome cases were identified and manually validated.

297 n was transferred and these gene models were manually verified and improved.

298 oveal avascular zone (FAZ) area was measured manually; vessel density was then quantified after the e

299 l inoculum with results from cultures plated manually with a 1-mul loop for comparable 2-month period

300 Striatal structures were traced manually with high reliability.