ライフサイエンスコーパス: mate pair

1 always affected a significant proportion of mated pairs.

2 offspring distribution of highly attractive mated pairs.

3 r correlations among partners' phenotypes in mated pairs.

4 hen the gene is deleted from both cells of a mating pair.

5 t sexual conflict between individuals in the mating pair.

6 reases in oviposition frequency in zebrafish mating pairs.

7 nts and produces offspring from all possible mating pairs.

8 s cerevisiae, to generate novel, alternative mating pairs.

9 reventing Prm1 transport to contact sites in mating pairs.

10 hat promotes plasma membrane fusion in yeast mating pairs.

11 a mild fusion defect in otherwise wild-type mating pairs.

12 spring viability and reproductive success of mating pairs.

13 with favored males through aggression toward mating pairs.

14 , assembled de novo with paired-end and long-mate-pair (8 kb) libraries were first assembled and anal

15 In some mating pairs, a sudden increase in GFP permeance was fou

16 nsduced to recipients after the formation of mating pairs affects imp activity.

17 Although fus1 mating pairs also have a defect in degrading the cell wa

18 of array comparative genomic hybridization, mate pair and cloned sequences, and FISH analyses, we ha

19 iguity to discover interchromosomal SVs from mate-pair and pair-end sequencing data.

20 ces the cell fusion defect of Prm1-deficient mating pairs and causes a mild fusion defect in otherwis

21 Mating pairs are established in clonal culture via flage

22 e independent functions and only prm1 mutant mating pairs are susceptible to contact-dependent lysis.

23 veals that the two plasma membranes in these mating pairs are tightly apposed, remaining separated on

24 Without Prm1, a substantial fraction of mating pairs arrest with their plasma membranes tightly

25 % is spanned by at least one uniquely placed mate-paired clone.

26 is was reduced in the presence of sufficient mate pair data.

27 an size than constitutional events even when mate-pair data were considered.

28 Mate-paired data are used to physically resolve haplotyp

29 We present a model in which members of a mated pair decide whether to care for their offspring or

30 SMASH combines signals from split reads and mate-pair discordance to detect somatic structural varia

31 wide, next-generation sequencing analysis of mate-pair DNA libraries and applied these tools to 16 PT

32 LCLs lacking ALK translocations, we combined mate-pair DNA library construction, massively parallel (

33 ependent competition that drives assortative mate-pair formation.

34 s and deletions of the DNA processing (dtr), mating pair formation (mpf) and traG coupling genes of R

35 counterattack also occurs in response to the mating pair formation (Mpf) system encoded by broad-host

36 te optimal environments for signal exchange, mating pair formation and widespread lateral gene transf

37 Mating pair formation proteins (Trb) from Yersinia pseud

38 sfer and replication system, or Dtr, and the mating pair formation system, or Mpf.

39 In RP4, these genes encode mating-pair formation functions and are essential for th

40 0, suggesting that these products comprise a mating-pair formation system.

41 If a mating pair forms between ergosterol-depleted cells desp

42 arus major) could access food, we restricted mated pairs from being allowed to forage at the same loc

43 d then merged to contigs and scaffolds using mate-pair information.

44 ength of the sequencing reads and absence of mate-pair information.

45 f linking data other than that inferred from mate-pair information.

46 ngth) opens a possibility to transform short mate-pairs into long mate-reads of length approximately

47 wild-type cells, cell fusion in prm1 mutant mating pairs is dramatically reduced when Ca(2+) is remo

48 identified the variants with high complexity mate-pair libraries and a novel computational algorithm

49 lity of contigs and scaffolds using Illumina mate-pair libraries and genetic map information.

50 ssemblies from high-coverage sequencing with mate-pair libraries extending up to 20 kilobases.

51 in a few contigs using only a single Nextera Mate Pair library of short reads.

52 Mate pair library sequencing is an effective and economi

53 n sequencing was performed using an Illumina mate-pair library protocol.

54 A cell-free, mate-paired library provided single DNA molecules that w

55 Illumina's recently released Nextera Long Mate Pair (LMP) kit enables production of jumping librar

56 In its absence, mutant mating pairs lyse or arrest in the mating reaction with

57 Their absence results in frequent mating pair lysis, which is counteracted by Ca(2+)-depen

58 We then carried out massively parallel mate-pair next generation sequencing (NGS) to examine th

59 The Illumina Nextera Mate Pair (NMP) protocol uses a circularization-based st

60 nce in specificity at either locus between a mated pair of individuals initiates an identical series

61 Long range linking information, such as mate-pairs or mapping data, is necessary to help assembl

62 comprehensive, and integrates read quality, mate pair orientation and insert length (for paired-end

63 adapter site to build 'virtual libraries' of mate pairs, paired-end reads and single-ended reads.

64 ich the production of one female progeny per mated pair per generation has been a rule, several ancie

65 Karyogamy is delayed by >1 h in fus1 mating pairs, possibly as a consequence of retarded fusi

66 d by the recently developed Illumina Nextera Mate Pair protocol.

67 In this study we used a whole-genome mate-pair protocol to characterize a landscape of genomi

68 Mate pair protocols add to the utility of paired-end seq

69 Unfortunately, the mapping and alignment of mate-pair read pairs to a reference genome is a challeng

70 However, introducing mate-paired reads (separated by a gap of length, GapLeng

71 novel approach for detecting indels between mate-paired reads that are smaller than the standard dev

72 We collected several billion mate-paired reads yielding approximately 18x haploid cov

73 6,529 intra-read indels, 5590 indels between mate-paired reads, 91 inversions, and four gene fusions.

74 g one based on read overlaps and paired-end (mate-pair) reads.

75 The high sequence coverage and presence of mate pairs result in fairly long haplotypes (N50 length

76 Electron microscopy of Deltakex2-derived mating pairs revealed novel extracellular blebs at presu

77 thms have been implemented and optimized for mate-paired Sanger-based reads, and thus do not perform

78 Extra constraints, including gap sizes, mate pairs, scaffold order and orientation, are explored

79 It also demonstrates that high-coverage mate-paired sequence can overcome assembly difficulties

80 by combining shotgun fragment and short jump mate-pair sequences with Hi-C data to generate chromosom

81 In this study, we performed mate pair sequencing (MPseq) on genomic DNA from 24 PDAC

82 Through whole-genome mate pair sequencing, we mapped and classified rearrange

83 equencing alignment programs when processing mate pair sequencing.

84 les the high numbers of artifacts present in mate-pair sequencing and reduces the false positive rate

85 ge test based on genomic rearrangements from mate-pair sequencing demonstrates promise for distinguis

86 focus on regions of gene amplification using mate-pair sequencing of long-insert genomic DNA with mat

87 gle nucleotide polymorphism (SNP) arrays and mate-pair sequencing-to compare CNVs that occur constitu

88 scribe a new tool, EULER-USR, for assembling mate-paired short reads and use it to analyze the questi

89 methods to reconstruct genomes directly from mate-paired short-read metagenomes.

90 Despite the requirement for a mating pair stabilization homologue, static coculture tr

91 homologous protein acts in pilus production, mating pair stabilization, and entry exclusion.

92 s generalize the concept of paired reads, or mate pairs, that have been routinely used for structural

93 s which block mating before the formation of mating pairs, the ste6(cef) (cell fusion) alleles permit

94 morum, known to be widespread and diverse in mating pairs, was found to encompass all of the isolates

95 in the old macronucleus of one partner of a mating pair were sufficient to inhibit deletion occurrin

96 y about 7% of the number of pups produced by mating pairs with an iPLA(2)beta(+/+) or iPLA(2)beta(+/-

97 Lpla2-/- mouse mating pairs yielded normal litter sizes, indicating tha