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1 agent for Middle East respiratory syndrome (MERS).
2 extending the analyte recognition beyond a 5-mer.
3 crystal formed by self-assembly of a DNA 13-mer.
4 ags behind beta7 incorporation into the half-mer.
5 al-reproductive tyrosine kinase; ie, soluble MER), a critical biomarker of compromised phagocytosis b
7 ex formation is observed for homo-sequence 2-mers (AA.DD) where there are no competing folding equili
8 In silico analysis indicated that this 49-mer Aalpha-chain peptide contained a motif (VLITL), with
10 ifferent SNP pipelines, wgMLST approaches, k-mer algorithms, whole genome alignment and others; each
11 with different classification strategies (k-mer, alignment, marker) can combine their respective adv
14 two maize inbred lines B73 and Mo17 using k-mer analysis to quantify the differences between the two
17 to study the functional correlation between Mer and TLRs in the development of GC responses and auto
21 can be uniquely described by overlapping 31-mers and show how rapid and accurate SNP and indel genot
23 mmetry axis (lel/ob), geometric isomers (fac/mer), and configurational diastereomers (R/S) arising fr
25 al binding between l-tyrosinamide and its 49-mer aptamer for which neither structural nor mechanistic
27 has undesirable behaviors (e.g. too many k -mers are selected when processing certain sequences).
29 aggregates up to the size of at least the 13-mer as well as partially folded beta-sheet containing ol
30 DNA sequence from E. coli O157:H7 having 22 mers as an amine-terminated probe ssDNA was immobilized
31 we used an alignment-free method that uses k-mers as genomic features for a large-scale comparison of
33 (SARS) and Middle East respiratory syndrome (MERS), as well as a number of important animal pathogens
35 creases in abundance of additional sets of k-mers associated with centromere, 45S rDNA, knob, and ret
40 This kernel extends an existing class of k-mer based sequence kernels, based on the recently descri
43 (as high as m/z 2793 corresponding to the 26-mer), but a significant abundance of thermolysis product
44 tors based on the co-occurrence matrix of k -mers by using an unsupervised representation learning ap
46 in the analogous complex with a pincer-type mer-C,N,S ligation, emphasizing the importance of the fa
47 tion under defined thermodynamic conditions, MER can also be used to capture changes in iron oxide re
53 a to improve both subsystem annotation and k-mer classification, and tags new genomes as having signa
54 mprehensive framework to integrate useful k -mer co-occurrence information with recent advances in de
55 wo different assembly states (36-mers and 32-mers) coexist as well as occasional extended forms with
56 roach to this task is to model the typical k-mer composition of a set of CRMs known to drive a common
61 d both vaccinated mice and control mice with MERS-CoV after adenovirus transduction of the human dipe
63 the significantly lower MERS-CoV titers and MERS-CoV and mRNA levels in challenged mice than those i
64 derstanding viral deISGylase activity within MERS-CoV and other CoVs.IMPORTANCE Coronaviruses, such a
67 uces a new tool to probe the pathogenesis of MERS-CoV and related viruses through the removal of vira
72 However, in vivo studies are limited because MERS-CoV cannot infect wild-type mice due to incompatibi
73 World Health Organization questionnaire for MERS-CoV case-control studies to assess risk factors for
74 accinated mice were fully protected from the MERS-CoV challenge, as indicated by the significantly lo
75 MERS-CoV has been hampered by the fact that MERS-CoV does not replicate in commonly available mouse
77 ace Sia by neuraminidase treatment inhibited MERS-CoV entry of Calu-3 human airway cells, thus provid
81 Therefore, development of mouse models of MERS-CoV has been hampered by the fact that MERS-CoV doe
83 DPP4 species-specific differences impacting MERS-CoV host range and better inform our understanding
85 e first autopsy performed on a fatal case of MERS-CoV in the world, which was related to a hospital o
89 mouse model to analyze the host response to MERS-CoV infection using immunological assays and transc
90 related activities may pose a higher risk of MERS-CoV infection, as may cross-border movements of cam
91 While bat, camel, and human DPP4 support MERS-CoV infection, several DPP4 orthologs, including mo
98 emergence and host susceptibility.IMPORTANCE MERS-CoV is a recently emerged zoonotic virus that is st
103 coronaviruses, the spike (S) glycoprotein of MERS-CoV mediates receptor recognition and membrane fusi
104 during the 2012-2015 outbreaks, 5 MAb escape MERS-CoV mutants, and 2 live human MERS-CoV strains.
108 for the inflammatory response in regulating MERS-CoV pathogenesis in vivo The Middle East respirator
109 lable vaccines or therapeutics, the study of MERS-CoV pathogenesis is crucial for its control and pre
111 Here, biophysical techniques revealed that MERS-CoV PLpro chiefly engages human ISG15 through its C
115 % fatalities and now spread to 27 countries, MERS-CoV poses a significant ongoing threat to global hu
117 Therefore, this study demonstrates that MERS-CoV RBD is an important vaccine target able to indu
118 icted to infection at the level of DPP4, the MERS-CoV receptor, we generated mice with humanized exon
119 (+) T cells, or macrophages has no effect on MERS-CoV replication in the lungs of infected mice.
120 2,3-linked Sias and the predominant sites of MERS-CoV replication in the upper and lower respiratory
121 bl2), as required for efficient SARS-CoV and MERS-CoV replication in vitro These data demonstrate tha
122 d high-resolution structures of the trimeric MERS-CoV S ectodomain in complex with G4, a stem-directe
124 that contained the MERS-CoV S1 domain of the MERS-CoV S protein fused to the RABV G protein C terminu
125 BNSP333-S, expresses a full-length wild-type MERS-CoV S protein; however, it showed significantly red
126 eloped a RABV-MERS vector that contained the MERS-CoV S1 domain of the MERS-CoV S protein fused to th
127 ental vaccine vector BNSP333, and the RABV G-MERS-CoV S1 fusion protein was efficiently expressed and
128 ivated rabies virus particles containing the MERS-CoV S1 protein induce potent immune responses again
129 rol studies to assess risk factors for human MERS-CoV seropositivity at a farm complex in Qatar.
130 ay with human erythrocytes and intact virus, MERS-CoV Sia-binding activity was assigned to S subdomai
131 ivated rabies virus (RABV) that contains the MERS-CoV spike (S) protein expressed on its surface.
132 e mutants, cross-neutralization of divergent MERS-CoV strains by RBD-induced antibodies remains unkno
134 e mutations detected in representative human MERS-CoV strains from the 2012, 2013, 2014, and 2015 out
135 S proteins of representative human and camel MERS-CoV strains identified during the 2012-2015 outbrea
136 infection by divergent pseudotyped and live MERS-CoV strains, as well as antibody escape MERS-CoV mu
141 in the distribution of DPP4 expression among MERS-CoV susceptible species, which might influence vari
142 nge, as indicated by the significantly lower MERS-CoV titers and MERS-CoV and mRNA levels in challeng
143 high-specificity, low-affinity attachment of MERS-CoV to sialoglycans during the preattachment or ear
144 ns designated S1(A) through S1(D) Binding of MERS-CoV to the cell surface entry receptor dipeptidyl p
147 By understanding the immune response to MERS-CoV we can develop targeted therapies to inhibit pa
149 e East respiratory syndrome betacoronavirus (MERS-CoV) and found that 11 of the 22 residues in the pF
150 iddle East respiratory syndrome coronavirus (MERS-CoV) binds to cellular receptor dipeptidyl peptidas
152 iddle East respiratory syndrome coronavirus (MERS-CoV) emerged in 2012 and is a highly pathogenic res
153 iddle East respiratory syndrome coronavirus (MERS-CoV) encode multifunctional papain-like proteases (
154 iddle East respiratory syndrome coronavirus (MERS-CoV) has been attributed to overcrowding, delayed d
155 iddle East respiratory syndrome coronavirus (MERS-CoV) has been shown to infect both humans and drome
156 iddle East respiratory syndrome coronavirus (MERS-CoV) highlights the zoonotic potential of Betacoron
157 iddle East respiratory syndrome coronavirus (MERS-CoV) infection have been reported worldwide, with 6
159 iddle East respiratory syndrome coronavirus (MERS-CoV) is a highly pathogenic respiratory virus that
160 iddle East respiratory syndrome coronavirus (MERS-CoV) is a lineage C betacoronavirus that since its
161 iddle East respiratory syndrome coronavirus (MERS-CoV) is a novel virus that emerged in 2012, causing
162 iddle East respiratory syndrome coronavirus (MERS-CoV) is an emerging human pathogen that is the caus
163 iddle East respiratory syndrome coronavirus (MERS-CoV) is an important emerging pathogen that was fir
164 iddle East respiratory syndrome coronavirus (MERS-CoV) targets the epithelial cells of the respirator
165 iddle East respiratory syndrome coronavirus (MERS-CoV) utilizes dipeptidyl peptidase 4 (DPP4) as an e
168 iddle East respiratory syndrome coronavirus (MERS-CoV), encode a papain-like protease (PLpro) that po
169 iddle East respiratory syndrome coronavirus (MERS-CoV), Mycobacterium tuberculosis (MTB), and human p
174 erefore, the activity of PLPs from SARS-CoV, MERS-CoV, and mouse hepatitis virus was evaluated agains
175 coronavirus, mouse hepatitis virus (MHV) and MERS-CoV, encode 2',5'-phosphodiesterases (2',5'-PDEs) t
178 cts and depletion of macrophages exacerbates MERS-CoV-induced pathology and clinical symptoms of dise
179 epitope was also recognized in SARS-CoV- and MERS-CoV-infected human leukocyte antigen DR2 and DR3 tr
187 reference-free methods based primarily on k-mer distributions or coverage information, the proposed
192 DNA sequences into k -mers and pre-train k -mer embedding vectors based on the co-occurrence matrix
196 as associated with loss of tubular Tyro3 and Mer expression in diabetic nephropathy tissue and glomer
197 Recently, TYRO3, a member of the TYRO3-AXL-MER family of receptor tyrosine kinases, was identified
198 nto two classes: one based on handcrafted k -mer features and the other based on convolutional neural
205 r taxonomic assignments, or use nucleotide k-mer frequency as the proxy for sequence similarity measu
206 and calculates four different statistics: k -mer frequency, 16S abundance, prokaryotic- and viral-rea
207 of UvrD in vivo is to unwind the excised 13-mer from dsDNA and that mutation of uvrD results in rema
211 e previously showed that Mer-deficient mice (Mer(-/-)) have increased germinal center (GC) responses,
213 compared with B6.Sle1b mice, indicating that Mer immunoregulatory signaling in APCs regulates B cell
214 lower levels of the cleavage product soluble Mer, improved efferocytosis, smaller necrotic cores, thi
216 ctly affect GC B cell responses, the loss of Mer in dendritic cells promotes enhanced T cell activati
218 integers k and L > k, we say that a set of k-mers is a universal hitting set (UHS) if every possible
219 293A cells transiently transfected with mER isoforms were used to detect EDC-mediated changes in
222 i-mismatch kernel performs better than the k-mer kernel, for larger k; and (iii) the di-mismatch + sh
225 vely compared 11 ONF metrics using several k-mer lengths for predicting host taxonomy from among appr
227 tivorous bats, suggests that transmission of MERS-like-CoVs mainly occurs via the fecal-oral route.
234 idney cells had down-regulation of Tyro3 and Mer mRNA and increased shedding of sTyro3 and sMer.
236 rticular, DOCKS uses less than 30% of the 10-mers needed to span the human genome compared to minimiz
237 ation, i.e. the number of times that each k -mer occurs, which is key in transcriptome assemblers.
238 receptor by assembling monomers into 6- to 8-mer oligomers; condensation of the preassembled oligomer
240 R spectroscopy, excludes the intermediacy of mer-(ONO(Q))Re(V)O2(IMes) in this oxygen atom transfer r
241 ide an in-depth analysis of the effect of k -mer ordering on the performance of the minimizers techni
244 number of Middle East respiratory syndrome (MERS) outbreaks have been linked to healthcare facilitie
245 After adjusting for age, epidemic period, MERS patients with comorbidity had around 4 times the ri
249 body was used to isolate mimotopes from a 12-mer peptide library in successive selection rounds.
251 interactions between Fn and each of eight 20-mer peptide variants containing amino acids Ala, Asn, Gl
252 of ArcA, which led to the discovery of an 11-mer peptide with the native sequence of ArcA that repres
255 ico the 41 highest-affinity, A2-binding 8-11-mer peptides and assessed their binding, kinetic complex
256 d 3 NS1 using an Ag microarray tiled with 20-mer peptides overlapping by 15 aa and identified five re
258 cross-beta-sheet self-association of the 49-mer Phe521Leufs peptide identified in vivo, whereas its
259 es reveal that removing the Ubl2 domain from MERS PLpro has no effect on its ability to process the v
264 assemblies through pairwise comparison of k-mers present in both input reads and the assemblies.
265 by PacBio or Oxford Nanopore), efficient k -mer processing is still crucial for accurate assembly, a
267 eutralizing antibodies cross-neutralizing 17 MERS pseudoviruses expressing S proteins of representati
268 inase-1, and interleukin-10 by activation of mer receptor tyrosine kinase associated with inhibition
269 phagocytic and immunomodulatory functions of Mer regulate GC responses to prevent the development of
271 ing platform involves immobilization of a 40-mer RNA probe specific for a characteristic fragment of
272 hese data establish that an inactivated RABV-MERS S-based vaccine may be effective for use in animals
273 lysis of DNase footprints to determine any k-mer's potential for protein binding in a specific cell t
275 s analyse the complete set of read-derived k-mer sequence at once, resulting in the need for computer
276 cribed ES, as well as conserved VSG 3'UTR 16-mer sequences for the generation of functional levels of
277 mistry was used to synthesize all possible 3-mer sequences: AAA, AAD, ADA, DAA, ADD, DAD, DDA, and DD
279 lies using eight programs with a series of k-mer sizes (from 25 to 71), including BinPacker, Bridger,
283 kinase family consisting of Tyro3, Axl, and Mer (TAM) is one of the most recently identified recepto
286 No therapeutics or vaccines are approved for MERS; thus, development of novel therapies is needed.
287 we used mediated electrochemical reduction (MER) to directly quantify the extents and rates of ferri
288 attempt to map sequence-level features ( k -mers) to binding event but usually ignore the location o
289 t in the detection of HRGPs using multiple-k-mer transcriptome assembly methodology was observed.
291 e of the macrophage efferocytosis receptor c-Mer tyrosine kinase (MerTK) reduces efferocytosis and pr
293 ecruitment, is downregulated in TAMs through Mer tyrosine kinase-dependent recognition of apoptotic c
295 and the natural lexicographic ordering of k -mers used by minimizers was recognized as their origin.
296 lly supported by the pairwise comparisons of MERs using 106 manually segmented ground-truth cells wit
297 sing concerns over the efficacy of RBD-based MERS vaccines against circulating human and camel MERS-C
300 event but usually ignore the location of k -mers, which can cause data fragmentation and consequentl
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