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1 ic databases and link findings to associated metadata.
2 projects along with a broad array of curated metadata.
3 g depth of coverage and integrating relevant metadata.
4 e, we have used standards to expose data and metadata.
5 We also prospectively collected clinical metadata.
6 more reidentifiable than men in credit card metadata.
7 cles to automate the retrieval of sufficient metadata.
8 d associated bioinformatics and experimental metadata.
9 for rapid identification to link species to metadata.
10 call format) in the context of geographical metadata.
11 edical Ontology (OBO) class descriptions and metadata.
12 access and analyze bioassay test results and metadata.
13 res and sequence typing data] and associated metadata.
14 tically generated lipid molecules and useful metadata.
15 s SQLite database for querying and accessing metadata.
16 tform for capturing and sharing experimental metadata.
17 ed flow data conditioned on experiment-level metadata.
18 e need to gather and organize the associated metadata.
19 about the study design or other experimental metadata.
20 omputed using the coordinates and associated metadata.
21 cticide resistance data and their associated metadata.
22 rieval of cryoEM maps, models and associated metadata.
23 ctral data and their associated experimental metadata.
24 the "current standard" of detailed clinical metadata.
25 al series) and improved metadata, and use of metadata.
26 ovides context-specific functionality to the metadata.
27 ign of database systems to hold the data and metadata.
28 tation of all the Robot Scientist's data and metadata.
29 ate the sharing of critical digital data and metadata.
30 a, extended to incorporate curation-specific metadata.
31 give an overview of these services and their metadata.
32 search tools rely almost exclusively on the metadata.
33 all annotated with detailed and standardized metadata.
34 omic model from a cryo-EM map with annotated metadata.
35 and integrate them with clinical and genomic metadata.
36 is of taxonomy and function, and support for metadata.
37 ns and the underlying biology in the form of metadata.
38 light on the privacy properties of telephone metadata.
39 experimental parameters in diffraction image metadata.
40 during 2003-2013, along with epidemiological metadata.
41 n of assembled metagenomes and their complex metadata.
44 ions" in the form of standardized experiment metadata about the specimen source analyzed and marker g
46 e database to match unknowns with biological metadata across over 110,000 samples; MS-DIAL 2.0, a sof
47 ture a complete annotation of the experiment metadata along with the metabolite abundance databased o
54 org, is a public repository for metabolomics metadata and experimental data spanning various species
55 els for age, gender, and tissue from textual metadata and GEO data using both a heuristic approach as
56 ntent and format of the metagenomic data and metadata and its submission to the CAMERA repository.
57 epitope locations, clinical and surveillance metadata and novel data derived from comparative genomic
58 software provides a user interface to query metadata and obtain standardized results in an exportabl
59 these datasets, we collected the associated metadata and organized them in a database called RNASeqM
60 CAA-related articles from PubMed, collected metadata and performed productivity analysis, copublicat
66 ffectively integrate sequence data, assembly metadata, and annotation to support both genome and comm
67 ile format supports storage of raw MSI data, metadata, and derived analyses in a single, self-describ
68 ling fast and convenient access to MSI data, metadata, and derived analysis results stored remotely t
69 encourages researchers to share sequence and metadata, and fosters collaboration between researchers
70 ormation on provenance, authorship and other metadata, and is flexible enough to include any kind of
71 is not traceable to changes in the attendant metadata, and is not linked to any known biases in surfa
74 imental data and metadata, and the equipment metadata, and supports the design of database systems to
75 and annotating of the experimental data and metadata, and the equipment metadata, and supports the d
76 scrapes user selected accession numbers and metadata, and then, with one click, users can submit thi
78 searches of expression images via associated metadata; and new displays that combine image data and t
79 ings of the experiment along with associated metadata; and the Metabolite Page, which provides a list
84 ucially, the method does not assume that the metadata are correlated with the communities we are tryi
85 etween the PDB dictionary and the XML schema metadata are described as well as the XML representation
89 sequencing, we used a novel approach termed metadata-assisted glycan sequencing (MAGS), in which we
90 to automate the sequencing of glycans using metadata-assisted glycan sequencing, which combines MS a
91 ess repository for geographic and ecological metadata associated with biosamples and genetic data.
93 SRAdb is an attempt to make queries of the metadata associated with SRA submission, study, sample,
96 s of statistical hypothesis testing, and its metadata-based organization of screening experiments int
97 des multigene query searching with iterative metadata-based search refinement and extensive visualiza
99 quality and validity of CD spectral data and metadata, both as an aid to data collection and processi
101 te and ongoing projects and their associated metadata can be accessed in GOLD through pre-computed li
104 ization of methods and development of robust metadata can increase data access but are not sufficient
106 ngoing projects, along with their associated metadata, can be accessed in GOLD through precomputed ta
107 ngoing projects, along with their associated metadata, can be accessed in GOLD through precomputed ta
109 research community, users are able to query metadata categories such as habitat, sample type, time,
110 ression, Pathway Details pages, experimental metadata checklists, experiment summary statistics and m
111 ewer, while biocurators will make use of the metadata-containing XML files and the BioLit database of
113 lance tools, extensive ontology development, metadata curation and representative genomic sequence id
114 d database-fueled investigations have placed metadata curation in the hands of researchers with littl
115 ion exists and correctly uses or ignores the metadata depending on whether they contain useful inform
117 including both the sequences themselves and metadata describing their abundance, assembly, predicted
119 quality, consistency and use, MOPED includes metadata detailing experimental design and analysis meth
125 stic recordings supported by spatio-temporal metadata enable rapid, non-invasive species identificati
126 a framework from which to draw on for future metadata-enabled functional inquiries of the vast viral
127 vides a combination of experimental data and metadata, examples of pre-computed analysis, step-by-ste
129 sion profile, opening the door for automatic metadata extraction and facilitating the re-use of plant
130 ility stems from two core concepts: flexible metadata facility and an open web-based architecture.
132 ting the content of the archive, an optional metadata file adding information about the archive and i
133 ages that can automatically generate ISA-Tab metadata file stubs from raw XML metabolomics data files
135 base of normalized SRA human sample-specific metadata following a schema inspired by the metadata org
136 ts, we first extract labels from the textual metadata for each GEO RNA dataset and evaluate the perfo
138 raphical user interface; (iv) collect custom metadata for each titration, analyte, run and batch of r
140 es, standardizes and integrates the outbreak metadata for the breadth of NIAID category A-C viral and
141 implement the proposed system, we propose a metadata format known as reverse phase protein array mar
142 /EMBL/GenBank feature table format, we share metadata formats for capillary and next-generation seque
143 ted by conflicting and proprietary image and metadata formats, that impede analyzing and sharing of i
145 nalyzing short read sequences and associated metadata from cancer patients to better understand the h
146 otation and local management of experimental metadata from high-throughput studies employing one or a
148 we applied the framework to the analysis of metadata from the Genomes OnLine Database and produced a
151 cations, our system performed best using the metadata heuristic (0.54 Precision, 0.89 Recall and 0.68
160 at supports the integration of heterogeneous metadata in model annotations and provides a user-friend
163 The information is then correlated with the metadata in the ORDB knowledge base to encode the unstru
169 e binned by their AMR phenotypes, as well as metadata including minimum inhibitory concentrations.
170 ne sets are annotated with several levels of metadata, including community ontologies, while gene set
171 can be queried using a variety of associated metadata, including habitat type and geographic location
172 ions Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72
173 ntinues to expand with the goal of providing metadata information related to the projects and the org
174 oviding the most comprehensive repository of metadata information related to the projects and their o
175 oviding the most comprehensive repository of metadata information related to the projects and their o
176 Searching and filtering is also possible by metadata information, such as sample details (e.g. speci
179 and memory use, records diagnostics, manages metadata, installs dependencies, logs version numbers an
182 g methodology, we demonstrate that telephone metadata is densely interconnected, can trivially be rei
183 he availability of computationally tractable metadata is especially important for the effective autom
184 with genomic nucleotide sequence data, this metadata is growing rapidly and becoming a valuable reso
185 s, checklists and ontologies describing what metadata is required for the interpretation and reuse of
186 However, information about each experiment (metadata) is in the format of an open-ended, non-standar
187 , their raw experimental data and associated metadata, maintained by one of the major open-access dat
188 s can be extracted directly from the textual metadata, many of the data available do not contain expl
192 uced a common data format for recordings and metadata of cellular electrophysiology and optical imagi
193 ARQL, the query language for RDF, to capture metadata of files in the TCGA open-access HTTP directory
195 urately has become increasingly important as metadata of many types, often assembled in hierarchies,
196 ure metadata substantially (capturing 90% of metadata on assay and sample levels), is much less prone
197 community, it is often hampered by a lack of metadata or differences in annotation styles of differen
199 h-throughput data production, and systematic metadata organization to enable cross-laboratory integra
200 literature text-mining, integrated outbreak metadata, outbreak surveillance tools, extensive ontolog
201 sion data while taking into account multiple metadata parameters; and, finally, to perform a meta-ana
202 rch lifecycle, and then focus on the role of metadata, particularly the ontologies on which the emerg
203 ations, their interactions, and diverse cell metadata, Perturb-seq dramatically increases the scope o
204 ard to store two- or three-dimensional image metadata, plant and root properties and geometries, cont
205 sers to create a local database for pathogen metadata, populate it with data from NCBI, easily query
206 user-provided sequence data with associated metadata, predictions of novel variant proteins, annotat
208 nsive microbiome data sets and corresponding metadata provides a vast, underused resource for the mic
209 line has its own page containing descriptive metadata, quality information, and links to archived ass
211 forces investigators to infer and to compare metadata rather than directly combining data from differ
212 upload marker gene sequences and associated metadata; reads are quality filtered and assigned to bot
213 ed States and abroad, is that communications metadata receives substantially less protection than com
221 We have continued to co-develop data and metadata representation formats with our collaborators f
222 ide sequences, they do not accession all the metadata required for ecological or evolutionary analyse
223 A in situ hybridization images and ancillary metadata revealing the patterns of gene expression of 81
225 s, we constructed a 1,133-HCC transcriptomic metadata set and validated findings in a publically avai
226 tope investigations and the examination of a metadata set we conclude that the lower limit for nitrif
227 e three components of any given input, i.e., metadata, short reads and quality score strings, are fir
228 inment hierarchy for arrays, imposition of a metadata standard based on a newly proposed MIDAS format
229 ng with improving study design, data access, metadata standardization, and analysis tools, will enabl
231 ompatible storage media, without any type of metadata structure, and thus with no standard facility w
232 nmrML2ISA reduces the time needed to capture metadata substantially (capturing 90% of metadata on ass
235 combination of a surname with other types of metadata, such as age and state, can be used to triangul
236 be annotated using aggregation of structured metadata, such as seasonal distribution, geographic loca
237 ENCODE data can also be retrieved using a metadata system that captures the experimental parameter
240 improve access to ENCODE data by relying on metadata that allow reusability and reproducibility of t
241 iques have created vast stores of images and metadata that are difficult to organize, search, process
242 owse and search the ENCODE data based on the metadata that describe the assays as well as summaries o
243 expression, higher-order phenotypic data and metadata that describe the protocols, processing and the
244 yotic organisms with three major clusters of metadata that represent pathogens, environmental isolate
245 nizations, using machine- and human-readable metadata that users can query to see the status of their
246 tionships between measured data elements and metadata - the contextual descriptors that define the pr
247 the diverse variant annotations and genotype metadata, there is a need for fast, flexible methods ena
249 llow diverse source of experimental data and metadata to be systematically incorporated into the mode
250 led approach that combines a network and its metadata to detect communities more accurately than can
251 roach highlights the potential for molecular metadata to inform highly-multiplexed single-cell analys
253 tandards, formats and protocols for data and metadata to make it easier for individuals and organisat
254 tes plant phenotypic data with environmental metadata to support experimental designs and to gain a m
256 includes a PostgreSQL database that captures metadata useful for disease outbreak investigations, and
260 cific dose estimates (SSDEs) using image and metadata was developed and validated in 16 examinations
261 ome sequencing (WGS) analysis and geographic metadata, we traced the origins of Salmonella Bareilly i
263 ts archiving of raw data, processed data and metadata which are indexed, cross-linked and searchable.
265 iating functional annotations and phenotypic metadata with each protein, we could compare our protein
266 ing ecologically and evolutionarily relevant metadata with publicly archived sequence data in a struc
267 enotype and phenotype together with clinical metadata within a machine-learning framework, we found s
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