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1 umscribed by phenotypical characters are not monophyletic.
2 mesiidae, Ctenizidae, and Dipluridae are not monophyletic.
3 sentative of four lemuriformes families were monophyletic.
4 result confirming that 'crustaceans' are not monophyletic.
5 grouping and we conclude that chordates are monophyletic.
6 All but two subfamilies are recovered as monophyletic.
7 ry of this population demonstrates that S is monophyletic.
8 he genus, and may therefore be assumed to be monophyletic.
9 ionship between SARS CoV and group 2 CoVs is monophyletic.
10 unaffected by selective drug pressure, were monophyletic.
11 onukia Ishihara and Onukia Matsumura are not monophyletic.
12 dings indicate that archaeal methanogens are monophyletic.
13 the group Deuterostomia, well established as monophyletic.
14 hat mammals with tribosphenic molars are not monophyletic.
15 ees strains of the same serotype were always monophyletic.
16 d the low-G+C Gram-positive bacteria are not monophyletic.
17 fferent ancestors, since the ingroup was not monophyletic.
18 ly ectophytophagous sawflies are found to be monophyletic.
19 n the Eastern North Pacific are reciprocally monophyletic.
20 trates, whereas canonical type I PKS KSs are monophyletic.
21 es--Columbea and Passerea--were supported as monophyletic.
25 the species is subdivided into three or five monophyletic agr groups but failed to reject the hypothe
26 showed that subtypes A and E are themselves monophyletic, although together they also form a larger
27 cate that (i) the supergroup Excavata is not monophyletic and (ii) the last common ancestor of eukary
28 imately 63% of 425 surveyed morphogenera are monophyletic and 19% are polyphyletic, although certain
29 anogaster, obscura, and willistoni, are each monophyletic and all three combined form a monophyletic
30 thin Gondwanatheria, which are recognized as monophyletic and closely related to multituberculates, a
31 lyses suggest that class Ia subunits are not monophyletic and consistently placed the apicomplexan-sp
34 virus lineages in Indiana and Oklahoma were monophyletic and formed a newly identified unique ancest
39 ve overlap, the two species are reciprocally monophyletic and show strongly bimodal genotypic cluster
41 alysis to show that Malagasy carnivorans are monophyletic and thus the product of a single colonizati
42 Strikingly, we found that very few OTUs were monophyletic, and many showed evidence of multiple indep
43 egions except env, lion subtypes B and E are monophyletic, and marginally more similar to Pallas cat
44 iously delimited) were strongly supported as monophyletic, and their relationships were fully resolve
45 nships between taxa that are not necessarily monophyletic, and visualizing how these relationships ch
48 kinases and some related proteins comprise a monophyletic assemblage within the P-loop NTPase fold.
49 o and Thermodesulfobacterium, or belonged to monophyletic assemblages recognized for a particular typ
50 ver, these characteristics do not group into monophyletic assemblages, suggesting rampant convergent
51 enes constitutes only one branch of a larger monophyletic assembly dominated by over 20 genes encodin
52 From reconstructed genomes we have defined monophyletic bacterial and archaeal DGR lineages that ex
53 ubstantial molecular differentiation in this monophyletic Bellamya clade has arisen since Late Pleist
54 nce, some gene genealogies were reciprocally monophyletic between these species, while others were pa
55 separated populations of L. lineolus are not monophyletic, but are sister taxa of different species o
61 ns of the newly isolated mbf1 genes formed a monophyletic clade different from other lichen-forming f
62 es considered calpain-2 orthologues formed a monophyletic clade external to sister clades for tetrapo
64 examined include almost all species within a monophyletic clade of endemic Hawaiian Tetragnatha speci
65 T loci have been characterized from a single monophyletic clade of fungi, the Dikarya (the ascomycete
66 hyla within which plant annexins represent a monophyletic clade of homologs descended from green alga
67 strated by a single well-defined constituent monophyletic clade of L1 non-LTR retrotransposons that i
69 In this article, we argue that identifying a monophyletic clade of metastatic subclones does not prov
71 rains of GALV isolated from gibbons formed a monophyletic clade that was closely related to the wooll
72 vides strong support for the legitimacy of a monophyletic clade Vicissicaudata, and demonstrates the
73 paraphyletic in our analyses, only forming a monophyletic clade when the B. canis genome was included
74 alyses demonstrated that SIVdrl1FAO formed a monophyletic clade with SIVmnd5440 and SIVmndM14, recent
77 y in which ungulate malaria parasites form a monophyletic clade within the Haemosporida, and branch p
78 morphologically while belonging to the same monophyletic clade, plus knowledge of the relevant GRNs
79 inae, Polistinae, and Vespinae) as a derived monophyletic clade, thus implying a single origin of eus
80 ta demonstrated that HSP90(AA+AB+B) formed a monophyletic clade, whereas TRAP is a relatively distant
81 en- and red-sensitive visual pigments form a monophyletic clade, which lends support to the hypothesi
87 es showed that SNAPs were distributed in six monophyletic clades corresponding to the major plant lin
88 an automated Cluster Picker which identifies monophyletic clades meeting user-input criteria for boot
90 F mitotypes of all species form reciprocally monophyletic clades supporting the hypothesis of taxon-s
95 lement from pVAPN, pVAPA, and pVAPB to seven monophyletic clades, each containing plasmid type-specif
96 analyses identify at least four separate and monophyletic clades, which should be recognized as four
101 nes demonstrated that the vpx genes formed a monophyletic cluster that grouped with vpr from SIVagm.
103 Nine of these hypothetical proteins form a monophyletic cluster within the broad superfamily of fer
104 iation allowed the definition of at least 20 monophyletic clusters associated with 9 or more differen
106 dUTPase sequence lineages in well-supported monophyletic clusters with eukaryotic, eubacterial, and
107 rium oxysporum is a phylogenetically diverse monophyletic complex of filamentous ascomycetous fungi t
108 da, Nematomorpha), together constituting the monophyletic Cycloneuralia that is the sister group of t
109 eas molecular phylogenetic studies recover a monophyletic Cyclostomata (hagfish and lampreys as close
111 Phylogenetic analysis of GH48 showed non-monophyletic distribution, an indication of horizontal g
113 nsmission pairs, that recipient viruses were monophyletic, encoding compact, glycan-restricted envelo
115 rtant duplications, leading to the separate, monophyletic enzyme families, coupled to individual late
116 consistently right-skewed, with most clades (monophyletic families and genera) containing few lineage
117 amino acid residue positions for each major monophyletic family and subfamily in the phylogenetic tr
120 receptor (CHIR) genes are members of a large monophyletic gene family and are organized into genomic
121 suggest that class II sequences constitute a monophyletic gene family within the plant and microbial
122 amilies and genera) containing few lineages (monophyletic genera and species, respectively), while on
123 most species for which FIV is endemic harbor monophyletic, genetically distinct species-specific FIV
125 anch leading to the common ancestor of their monophyletic group (for example Chiroptera), followed by
126 pliosaurids represent a globally distributed monophyletic group (the genus Pliosaurus, excluding 'Pli
127 quence analysis shows that these ADHs form a monophyletic group along with additional family members
128 the H. ventricosa group do not constitute a monophyletic group and Alcyonohippolyte does not constit
129 showed the putative class II CysRSs to be a monophyletic group and homology modeling revealed a cons
130 we show that swarming species do not form a monophyletic group and non-swarming species that are clo
131 t all endemic Malagasy primates constitute a monophyletic group and to determine the evolutionary rel
133 , a West African M. excelsa cluster formed a monophyletic group at plastid DNA and was more related t
134 ophora has been treated as a paraphyletic or monophyletic group at the base of the Mollusca, proximat
135 ntain a topoisomerase IB gene that defines a monophyletic group closely related to the eukaryotic enz
136 yses reveal that the coliphage species are a monophyletic group consisting of two clades representing
137 iously placed in different clusters formed a monophyletic group in all trees, suggesting that the Pro
138 The parabasalid sequences formed a robust monophyletic group in phylogenetic reconstructions with
139 er hepadnavirus did not form a fish-specific monophyletic group in the phylogenetic analysis of all t
140 of diplomonad and trichomonad GPIs formed a monophyletic group more closely related to cyanobacteria
141 that form complex oligomers are limited to a monophyletic group of families; (3) kinesins that crossl
142 ed alpha L, alpha M, alpha X, and alpha D, a monophyletic group of immune cell-expressed alpha integr
145 Mediterranean Sea Brine Lakes 1) comprises a monophyletic group of uncultured archaea found in differ
147 atively, all Syncerus sequences cluster as a monophyletic group on an evolutionary tree and differ fr
148 indicated that perchlorate reductase forms a monophyletic group separate from chlorate reductase of I
149 diaetids, atypids, and mecicobothriids) is a monophyletic group sister to all other mygalomorphs; and
150 amily suggests that the HisZ proteins form a monophyletic group that attaches outside the predominant
151 of Madagascar (Primates: Lemuriformes) are a monophyletic group that has lived in isolation from othe
154 hippolyte does not constitute a reciprocally monophyletic group to Hippolyte, with both genera herein
156 o and then (Gnetales + Pinaceae) sister to a monophyletic group with all other conifer families.
157 Most other plant sequences form a clear monophyletic group with animal MEF2-like domains to form
158 pology in which Scaphoideus species formed a monophyletic group within a larger clade comprising thre
159 e aberrant spa-types (t112, t121) and form a monophyletic group within the clade of North American US
162 at the canine influenza virus genomes form a monophyletic group, consistent with a single interspecie
163 d that the three endosymbionts do not form a monophyletic group, indicating that the endosymbiotic li
164 because it is basal (ancestral) to the human monophyletic group, it probably represents a progenitor
165 e maize FIE2 and sorghum FIE proteins form a monophyletic group, sharing a closer relationship to eac
167 members of the family Metschnikowiaceae as a monophyletic group, three species of Debaryomyces, and s
168 h monophyletic and all three combined form a monophyletic group, which corresponds to the subgenus So
169 The Hawaiian Drosophila and Scaptomyza are a monophyletic group, which is the sister clade to the vir
170 signs all known eukaryotic MSH proteins to a monophyletic group, whose branches correspond to the res
179 alysis of nucleotide sequences revealed: (1) monophyletic grouping of alleles from each genus, (2) tr
180 nalysis of nucleotide sequences revealed (1) monophyletic grouping of alleles from each genus, (2) tr
181 s illustrates that UP-1s and UP-2s fall into monophyletic groups and are biased with respect to speci
182 However, by identifying sequences unique to monophyletic groups at increasing phylogenetic depths, w
184 therefore conclude that SYCP1 and SYCP3 form monophyletic groups of orthologous proteins across metaz
185 of both teleosts and tetrapods contain four monophyletic groups of SCNA genes, and that tandem dupli
186 (grouse and ptarmigan) is supported by ASLV monophyletic groups reflecting geographic distribution a
187 rwise and multiple alignments), formation of monophyletic groups using Neighbour-Joining trees, and s
188 tic RAD51 and DMC1 genes formed two separate monophyletic groups when archaeal RADA genes were used a
190 e-based strategy-focused on common ancestry, monophyletic groups, and derived functional traits-is ex
191 he avian and mammalian viruses form distinct monophyletic groups, implying that interclass transmissi
198 compassed by three early-radiating, arguably monophyletic groups: Amoebozoa, opisthokonts, and bikont
200 In order to investigate whether a novel monophyletic HAdV-D8 strain prevailed during the epidemi
201 d with genomic surveys, that Cyclostomata is monophyletic: hagfish and lampreys share 4 unique microR
203 d surprisingly close genetic affinity of the monophyletic Hawaiian group to two diploid species of mo
204 pomorphies are also evident between them and monophyletic Homo habilis/rudolfensis + H. erectus.
205 , the causative agent of typhoid fever, is a monophyletic, human-restricted bacterium that exhibits l
209 Bacteria domain; (iv) almost all groups are monophyletic in prokaryotes at most taxonomic levels, bu
211 to determine whether the derived S morph was monophyletic, indicating a long history of coexistence w
212 ever, isolates of the same serotype were not monophyletic, indicating that recombination had occurred
213 cally similar allopatric populations are not monophyletic, indicating that the mostly coastal 'long-b
215 Statistical analyses reject the idea of a monophyletic Insectivora as well as traditional concepts
216 d the lizard-infecting Leishmania within the monophyletic Leishmania genus, supporting previous data
220 A. baumannii, even a fairly recently derived monophyletic lineage can still exhibit significant genot
222 nd plants (also known as embryophytes) are a monophyletic lineage embedded within the green algae.
223 yses showed that the Ugalla viruses formed a monophyletic lineage most closely related to viruses end
225 247, including 24 GenBank records) formed a monophyletic lineage separate from other Periplaneta spe
228 last psbA gene resolves S. thermophilum as a monophyletic lineage with large genetic distances from a
229 e diverse than human parasites, which form a monophyletic lineage within the ape parasite radiation.
230 rial sequences, human P. falciparum formed a monophyletic lineage within the gorilla parasite radiati
231 led a diverse group of viruses that formed a monophyletic lineage within the SIVcpzPts radiation.
232 ancyla verreauxi evolved as two reciprocally monophyletic lineages formed by stem members of the trib
234 c structure was found, with two reciprocally monophyletic lineages on each side of the Great Rift Sys
235 s from Africa and Eurasia represent distinct monophyletic lineages separated for more than one millio
236 chondrial data identified three reciprocally monophyletic lineages: one representing all small forms
237 and DNA sequence analyses identified sets of monophyletic markers consistent with the pattern of dive
238 lecularly-defined clades, even when strictly monophyletic morphogenera are excluded from analyses.
240 that form root-nodule symbioses are within a monophyletic 'nitrogen-fixing' clade and associated sign
243 propose a method for dividing the tree into monophyletic or paraphyletic groups so as to optimize th
245 rior hypotheses that found Triatominae to be monophyletic or polyphyletic and may be due to the more
247 es, but rejects the prevailing paradigm of a monophyletic Orbiculariae, the most diverse lineage, con
249 cterial genomes into one of seven undisputed monophyletic orders or families, despite great variabili
250 ested that A subgenomes of B. juncea were of monophyletic origin and evolved into vegetable-use and o
254 to all prior hypotheses, our data support a monophyletic origin of the landrace cultivars from the n
259 during domestication, expectations regarding monophyletic origins, and interpretations of multiple do
263 es (HPVs) have long been thought to follow a monophyletic pattern of evolution with little if any evi
265 are not likely to be the basal lineage of a monophyletic Porifera or the sister group to all other a
268 es derived from sera and mosquitoes showed a monophyletic relationship suggestive of a point source i
270 genera") are significantly more likely to be monophyletic relative to molecular phylogenies than rand
271 th less diverse than and nearly reciprocally monophyletic relative to those from T. b. brucei and T.
272 sis of the genus suggests that M. smithii is monophyletic, rendering a hybrid origin of asexuality un
278 pecimens from the Atlantic comprise a single monophyletic species and suggest possible species-level
280 suggests that: 1) genus Macaca contains four monophyletic species groups; 2) within the Asian macaque
281 nstrated L. acidophilus was a low diversity, monophyletic species with commercial isolates essentiall
283 ences from invertebrate deuterostomes form a monophyletic subclade with vertebrate GlyT2, while inver
285 RD181) further divided this family into four monophyletic subgroups, demonstrating a deeper populatio
286 a patens has three profilin genes, which are monophyletic, suggesting a single ancestor for plant pro
288 PFam54 members able to bind human FH are not monophyletic, suggesting that human FH affinity, however
289 ty of the Cambarus subgenera are rejected as monophyletic, suggesting the morphological characters us
290 riation in many plant groups, and especially monophyletic taxa with multiple base chromosome numbers,
291 e trees generated by parsimony confirmed the monophyletic taxonomic placement of Glossina, where fusc
292 e probability that a set of gene lineages is monophyletic under a two-species neutral coalescent mode
293 to have evolved from common ancestors of 15 monophyletic vertebrate GPCR subgroups (e.g., the ancest
295 While viruses in each shelter were generally monophyletic, we observed some gene flow between them.
296 , Pseudomonadales, or Oceanospirillales were monophyletic; we obtained strong support for clades that
298 this structurally defined group of genes is monophyletic with respect to kinase domains when compare
299 tial VP1 sequences of each CVB serotype were monophyletic with respect to serotype, as were the VP4-V
300 The prevailing view is that ratites are monophyletic, with the flighted tinamous as their sister
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