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1 g aromatic amino acids, the caveolin-binding motif.
2 ture yet share the same RE4(mu3-OH)4 cluster motif.
3 ecognition/interaction amino acid consensus" motif.
4 nding domain: motif-1, motif-2, and the hook motif.
5 erence for a low-affinity, secondary binding motif.
6 ining a 5' terminal oligopyrimidine (5' TOP) motif.
7 ical hairpin, and bipartite helix-turn-helix motif.
8 genesis in cells expressing the mutated IVVY motif.
9 phenylalanines (FF) in an acidic tract (AT)] motif.
10 erformed to achieve the required uronic acid motif.
11 se(s) compared to the corresponding template motif.
12 CDGSH domain that is followed by the "NEET" motif.
13 he upstream motif and RRM1 to the downstream motif.
14 y site located in close proximity to the RGD motif.
15 mpared with models based on known TF binding motifs.
16 of digesting genomic DNA at defined sequence motifs.
17 ucture-fitness relationships in other common motifs.
18 f G-repeats on the formation of tetrameric i-motifs.
19 moters harboring canonical and variant MEF2C motifs.
20 ersified to recognize unique phosphorylation motifs.
21 and application to the synthesis 1,3-polyol motifs.
22 pression through inhibiting chaos-generating motifs.
23 rol through conserved cholesterol-responsive motifs.
24 sites, which are enriched for NR recognition motifs.
25 folding properties of individual structural motifs.
26 up to three copies of hAgo via its three GW motifs.
27 acting factors to cis-localized DNA sequence motifs.
28 ere significantly associated across multiple motifs.
29 n of RAB GTPases that contain C-terminal CXC motifs.
30 hese lists, we can find co-TFs for candidate motifs.
31 rs/collaborators and discovering enriched TF motifs.
32 quate knowledge of cell-specific DNA binding motifs.
33 sidues that confer specificity towards CC/TC motifs.
34 ation of two independent secondary structure motifs.
35 are hard to explain via evolutionary mating motives.
37 Our group previously identified Tripartite Motif 14 (TRIM14) as a component of a prognostic multige
38 lving leaving group stabilization by H155 in motif 2 and water coordination by N89 in motif 3 is prop
41 ork, we have extended a previously described motif (4 x 5) by expanding the structure to a system tha
42 ke and metalloproteinase with thrombospondin motifs-4) is a secreted proteinase involved in inflammat
43 An enhancer with amalgamated E-box and GATA motifs (+9.5) controls expression of the regulator of he
44 ome-wide methylation and highlight conserved motifs across three Trichodesmium isolates and two Trich
46 free energy landscape containing all binding motifs allows determination of the ligand mechanical foo
47 s hypothesis, we carried out a comprehensive motif analysis on the prognostic GSs from five cancer ty
51 re of FBXW7 bound to the DISC1 phosphodegron motif and exploit this information to prove that disrupt
53 enabled the discovery of subdominant binding motifs and an integrative analysis quantifying the contr
55 ntify that PrimPol possesses two RPA-binding motifs and ascertained the key residues required for the
57 s therefore critical in directing structural motifs and dictating the resulting hydrogen and halogen
58 e of this analysis, highly conserved protein motifs and domains within each of the AARS loci were ide
59 ounds reveals the key role of VO4 structural motifs and electronic band-edge character in efficient p
60 e.g. presence/absence of mutations, binding, motifs and epigenetic marks) and continuous data (e.g. g
61 e can identify functionally relevant circuit motifs and generalize the framework to solve other categ
62 compounds with potentially reactive chemical motifs and poor physicochemical properties are published
64 tly conjugated to Dha through its piperidine motif, and its antibody-mediated intracellular delivery
65 gh recognition of a short phenylalanine-rich motif, and the presence of similar motifs in other small
67 , identifies export-promoting ALYREF-binding motifs, and reveals CstF64- and PABPN1-mediated coupling
68 the crystallographically-defined recognition motif, apparently as a consequence of non-specific elect
69 lly modified with a simple aromatic boronate motif are actively trafficked to the nucleus via the imp
73 et of variables provides fine control of how motifs are placed into sequences, thereby allowing the i
75 ur analyses reveal that a conserved diacidic motif (Asp-Glu) in these proteins is necessary for their
76 of a previously unknown high-affinity AICE2 motif at a human single-nucleotide polymorphism (SNP) of
77 revealed a cenH3 nucleosome binding CENPC-k motif at the C terminus of Arabidopsis thaliana KNL2, wh
78 based on the biorecognition of complementary motifs at cell surface resulting in receptor crosslinkin
80 tations within a PMS2 C-terminal (721)QRLIAP motif attenuate or abolish human MutLalpha interaction w
81 um-range order is detected with crystal-like motifs based on the B2 CuZr structure and its distorted
86 ata establish that cargoes containing Yxxphi motif, but not dileucine motif, play a critical role in
87 investigated whether a mutation in the CX3C motif by insertion of an alanine, A(186), within the CX3
88 -rich DNA, here we show that this structural motif can be exploited to guide the self-assembly of nap
89 ir interaction network presents a regulatory motif characteristic of a "feedback-amplified domineerin
91 levels of interleukin-6, interleukin-8/C-X-C motif chemokine ligand 8, and monocyte chemoattractant p
92 sequences harboring distinct cis-regulatory motifs, constitute much of cell-type-specific splicing,
94 hypomethylated region mapping to Iqgap2 (IQ motif-containing GTPase activating protein 2) and F2rl2
96 diately flanking the previously defined AICE motif controlled the affinity of BATF-IRF4 for direct bi
97 homodimers revealed that 72% of heterodimer motifs correspond to conjoined half-sites preferred by p
99 e use of allosterically regulated C-terminal motifs could be a common mechanism for PilZ adaptor prot
102 approximately 20 residues downstream of this motif determines the size of the resultant hetero-oligom
107 ely to be involved in interaction with the i-motif DNA, and His24 and Arg26 were chosen for modificat
112 ern, identified transcription factor binding motifs enriched in each cluster, and generated a model G
114 odularity between sparsely connected network motifs, Escherichia coli (E. coli) appears to favor cros
116 Here we identified a Y/F-x-x-Y/L/F-x-Y/F motif, evolutionarily conserved from the first tetrapods
119 he hexapeptide motif in repeat R3, a crucial motif for fibril formation, shows strikingly low variabi
123 recognition were identified and recognition motifs for 6 uncharacterized Thermus-family enzymes were
124 sing this approach we developed quantitative motifs for a selection of kinases from each branch of th
127 These mRNAs' 3'UTRs have enriched binding motifs for several RNA-binding proteins, which implies e
128 ion factors (TFs), and enrichment of binding motifs for these TFs in alphaTC1/betaTC6 cis-regulatory
132 B-lymphocytes activated by un-methylated CpG motifs, found in bacterial DNA, and beta-glucans, found
134 compared with in silico predictions based on motifs from methods such as protein-binding microarrays
138 Five disease-causing variations in these motifs have been identified in ABCB4 (G535D, G536R, S107
139 promoter region containing the GCN4/Skn1/RY motif highlights its importance for HvPAPhy_a expression
140 tro studies here show that at the same shift motif HIV reverse transcriptase generates -1 and +1 inde
141 r2 contains two CDGSH motifs, and each CDGSH motif hosts a [2Fe-2S] cluster via three cysteine and on
142 and broad peak calling, peak annotation, and motif identification for ChIP-seq, differential gene exp
143 rsensitive site mapping, site annotation and motif identification for DNase-seq, analysis of nascent
146 EPIYA-C motifs or the presence of an EPIYA-D motif impacted early changes in host cell elongation; ho
148 Vicinal diamines are a common structural motif in bioactive natural products, therapeutic agents,
150 t PIN1 binds the phosphorylated Thr(187)-Pro motif in p27 and reduces p27's interaction with cyclin A
153 l analysis of a cyclin F-specific amino acid motif in the C-terminal region of Vif indicated rescue o
154 KII) strongly interacts with a novel binding motif in the N-terminal domain of CaV1 LTCC alpha1 subun
156 the recognition of the hexanucleotide AAUAAA motif in the pre-mRNA polyadenylation signal by the clea
157 by integrating transcription factor binding motifs in a machine learning framework, we identify EOR-
159 ealed that intact PIN domain and Zinc finger motifs in human hUTP23 are essential for 18S rRNA matura
161 nine-rich motif, and the presence of similar motifs in other small Tim proteins predicts robust degra
163 eals occurrences of protein and drug binding motifs in the HERV RNA ensemble that do not occur in min
165 e a local seeding model where the kinked GGA motifs in the stem region of TGGAA repeat DNA act as hot
166 s) zinc finger protein binds these GA repeat motifs, increases chromatin accessibility, enhances hist
168 wo self-complementary beta-hairpin enhancing motifs into a short polyQ sequence to generate a mutant,
169 n both species and are often associated with motifs involved in the Nrd1-Nab3-Sen1 termination pathwa
171 GPA levels, indicating that the GCN4/SKn1/RY motif is not the only element responsible for the level
172 erestingly, a Cd(S-Au-S)3 "paw-like" surface motif is observed for the first time in nanocluster stru
176 he infectious clone, which contains the VNDT motif, is highly pathogenic and causes lethality in a mo
178 th SpyTag C-terminal to the SrtA recognition motif, it can be covalently captured by an immobilized S
180 lel with evolution of consensus RNA sequence motifs known to be associated with the enzymatic complex
181 lt from a common set of recurring structural motifs, leading to the perspective that a generalizable
182 BEESEM is capable of selecting the optimal motif length and calculating the confidence intervals of
183 ition, Spliceman2 integrates with RNAcompete motif libraries to provide a prediction of which trans -
184 (LBP), C-reactive protein (CRP), ILT-4, C-C motif ligand 18 (PARC), and sialic acid-binding Ig-like
185 rosis factor-alpha, IL-1beta, chemokine (C-C motif) ligands 2 and 3, macrophage inhibitory factor, an
186 ies using thymidine nucleotides to lock in i-motif loop lengths support the conclusion that the most
188 However, the peptide containing the selected motif, LRLLRWC, was not the fastest; sequence context is
191 rtion of an alanine, A(186), within the CX3C motif, mutating it to CX4C ((182)CWAIAC(187)), known to
192 ionarily conserved, truncated leucine zipper motif near the N terminus as well as a strictly conserve
194 blies describe not only the basic structural motif of G-quadruplexes formed by, e.g., telomeric DNA s
195 at the N terminus of rice CCR4 and the PXLXP motif of rice CAF1 play critical roles in OsCCR4-OsCAF1
199 nalysis of transcription factor-binding site motifs of differentially dysregulated genes uncovered di
200 data suggest that the Walker A and Walker B motifs of Rrp2 are involved in the control of another un
201 heir promoters were enriched for the binding motifs of TFAP2 (which was identified in promoters of T,
202 centration (0, 2, 5 at.%) but the structural motifs of the medium-range ordered clusters become more
204 ar mechanism of a novel mutation at the SUMO motif on signal transducer and activator of transcriptio
205 tigate the effect of distinct intramolecular motifs on xylan conformation and on the interaction with
207 ies were bound with N ligand as eta(2) bound motifs or phosphonate ligand as a monodentate, as well a
209 the presence of a short protospacer adjacent motif (PAM) flanking the target site, and subsequent R-l
210 utations in the seed or protospacer adjacent motif (PAM) of the target sequence cause immune failure
218 s containing Yxxphi motif, but not dileucine motif, play a critical role in the earliest stages of AP
219 rt the conclusion that the most stable dCn i-motifs possess one nucleotide in each of the three loops
220 es data, either from ChIP-seq experiments or motif predictions, and outputs active TF-gene links as w
221 t in mice DND1 binds a UU(A/U) trinucleotide motif predominantly in the 3' untranslated regions of mR
223 its and four arene-Ru clips, into a cofacial motif previously demonstrated with free-base, Zn(II), an
225 webs have been found to exhibit remarkable "motif profiles", patterns in the relative prevalences of
227 ction mutations in ORGANELLE RNA RECOGNITION MOTIF PROTEIN6 (ORRM6) result in the near absence of RNA
229 of the exon-intron structures and conserved motifs provided further insight into the evolutionary re
231 ultiple key residues in the receptor-binding motif (RBM) of RBD and demonstrated their strong cross-r
232 on-inducing cysteine-rich protein with kazal motifs (Reck) was identified to be one of the target gen
234 became resistant to degradation when its SQ motifs required for ATR-mediated phosphorylation were mu
238 eracting protein (RIP) homotypic interaction motifs (RHIM) play a key role in cell death and inflamma
239 2 forms a tight complex with the polyproline motif-rich protein Aim21, which interacts physically wit
241 Several variants of a nucleic acid binding motif (RRM1) of putative transcription factor hnRNP LL c
242 in diverse RNAs through two RNA-recognition motifs, RRM1 and RRM2, and post-transcriptionally regula
243 gmentation within the second RNA recognition motif (RRM2) of TDP-43 has been observed in patient tiss
244 tif were identified from the network via the motif's enrichment or biased distribution towards transc
246 tors for slippage at slippage-prone template motif sequence 3' of such 'slippage-stimulatory' structu
247 ned by binding first to protospacer adjacent motif sequences on DNA, which is followed by reversible
248 nes with deletions located downstream of the motif show even lower MGPA levels, indicating that the G
249 fied within the NEP degradation site ("RPRL" motif) showed improved in vitro proteolytic stability wh
250 f the 14-3-3 dimer, with both 14-3-3 binding motifs simultaneously participating in protein associati
252 e marked by H3K4me1, Ep300, and Fox/Sox/Smad motifs, suggesting interplay between these factors in ge
253 transcriptional coactivator with PDZ binding motif (TAZ) and Yes-associated protein (YAP) proteins vi
254 transcriptional coactivator with PDZ-binding motif (TAZ) expression, which is required for osteoblast
255 N cooperated with a hitherto uncharacterized motif, termed AcidicN, to confer H4-tail sensitivity and
257 for function; most likely as an ER retention motif that enables anchoring to the ER-derived LCV membr
259 cid residues and a minimal fusogenic peptide motif that is necessary for promoting cell-cell fusion w
260 Heterochromatin Protein 1 (HP1) interaction motif that mediates direct binding between KDM2A and HP1
262 repeats are also small cysteine-rich protein motifs that can be O-glycosylated by several ER-localize
263 networks, it is possible to identify network motifs that lead to functional outputs such as bistabili
267 is reflected in people's minds as dominance motives that underpin ideologies and actions that ultima
268 respond to known nuclear localization signal motifs, they represent a new motif for INM trafficking.
269 at the frequency of a small number of linear motifs three amino acids in length can accurately identi
271 unusual conformation that allows this short motif to be bound directly by both CPSF-30 and WDR33.
273 ng process, eVP40 utilizes its PPXY L-domain motif to recruit a specific subset of host proteins cont
274 Arpin, which uses VCA-related acidic (A) motifs to interact with the Arp2/3 complex, induced the
276 TFs with winged helix-turn-helix (wHTH) motifs use an alpha helix to read the base sequence in t
278 so overcomes the limitations of conventional motif-visualization tools in handling positional interde
279 nd that the DAT carboxy-terminal PDZ-binding motif was required for DAT recycling and exit from retro
281 typically miss these position-specific short motifs, we developed kpLogo, a probability-based logo to
283 metallosupramolecules possessing star-shaped motifs were prepared based on the careful design of meta
286 to identification of a recurring structural motif where lysine NH3(+) group interacts with backbone
287 f an incoherent feed-forward loop, a network motif where two interconnected pathways or transcription
288 is not due to an alteration of the triacidic motif, which rather affects the efficiency of hemITAM ph
289 e analysis showed that mutations within this motif, which suppressed channel binding and its effects
290 1L and MAF1S, are regulated by the C-box YSY motif, which, when mutated, alters species stoichiometry
292 e analysis also reveals the presence of this motif with critical residues in the homolog of other Hel
293 d-state structure shows an eclipsed stacking motif with the electron-poor ammonium methyl groups occu
294 ks inferred by integrating sequence-specific motifs with expression have substantially greater agreem
296 ic amphipathic lipid packaging sensor (ALPS) motif within HOPS Vps41, a target of the vacuolar kinase
298 ctivity requires the sumoylation-interacting motif within p150N, which is also required for the nucle
299 sferase (Lgt) recognizes a conserved lipobox motif within the prolipoprotein signal sequence and cata
300 ane-proximal internal tyrosine-based sorting motif YXXL as a determinant that can affect the incomple
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