ライフサイエンスコーパス: multilocus sequence typing

1 action, pulse-field gel electrophoresis, and multilocus sequence typing).

2 staphylococcal chromosomal cassette mec and multilocus sequence typing.

3 cile infection (CDI) fecal samples underwent multilocus sequence typing.

4 nfirmed by a number of biochemical tests and multilocus sequence typing.

5 elineated into 12 sequence types (STs) using multilocus sequence typing.

6 resolution of the E. coli relationships than multilocus sequence typing.

7 causing human disease were characterized by multilocus sequence typing.

8 articular animal sources was evaluated using multilocus sequence typing.

9 genes, pulsed-field gel electrophoresis, and multilocus sequence typing.

10 ts of two healthy children were genotyped by multilocus sequence typing.

11 eus [MSSA]) were genotyped by spa typing and multilocus sequence typing.

12 study, were assigned a sequence type (ST) by multilocus sequence typing.

13 nd environmental specimens were genotyped by multilocus sequence typing.

14 ith a more sensitive method, such as PFGE or multilocus sequence typing.

15 and sequence types (STs) were determined by multilocus sequence typing.

16 19F), pulsed-field gel electrophoresis, and multilocus sequence typing.

17 ptococcus pneumoniae, and isolates underwent multilocus sequence typing.

18 -field gel electrophoresis, a DNA probe, and multilocus sequence typing.

19 esis, multilocus enzyme electrophoresis, and multilocus sequence typing.

20 Meningococcal CCs were assessed by multilocus sequence typing.

21 pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing.

22 iverse and can be classified by serotype and multilocus sequence typing.

23 C. trachomatis samples were typed using multilocus sequence typing.

24 s from the same counties were compared using multilocus sequence typing.

25 to 2011, we identified 85 sequence types by multilocus sequence typing.

26 rsity of the isolates was investigated using multilocus sequence typing.

27 dom (approximately 600,000 people) underwent multilocus sequence typing.

28 did whole genome sequencing and core genome multilocus sequence typing (1546 loci) on serogroup W di

29 ypic characterization of 300 NmY isolates by multilocus sequence typing, 16S rRNA gene sequencing, an

30 icd allele 96 and gyrB allele 87, two of the multilocus sequence typing alleles that define ST648; an

31 Multilocus sequence typing analysis for a variety of Shi

32 Multilocus sequence typing analysis of 49 B. bronchisept

33 Pulsed-field gel electrophoresis and multilocus sequence typing analysis showed that 24 (39%)

34 restriction fragment length polymorphism and multilocus sequence typing analysis.

35 We applied multilocus sequence typing and a microarray for detectio

36 Using multilocus sequence typing and an algorithm, BURST, we a

37 valuation of genotypic (gene comparisons and multilocus sequence typing and analysis), genomic (dDDH,

38 We performed multilocus sequence typing and antifungal susceptibility

39 Isolates were characterized by multilocus sequence typing and antigen sequence typing o

40 multilocus restriction fragment typing, and multilocus sequence typing and assayed for the PVL virul

41 pes (sequence types [ST]) were defined using multilocus sequence typing and assigned to a clonal comp

42 borrelial DNA in ticks were characterized by multilocus sequence typing and by sequencing five other

43 cluding 322 NTHI strains, have been typed by multilocus sequence typing and found to have 359 sequenc

44 BLEC by pulsed-field gel electrophoresis and multilocus sequence typing and identified their blaESBL

45 cell lymphoma, which was identified both by multilocus sequence typing and matrix-assisted laser des

46 Isolates underwent multilocus sequence typing and PCR sequencing of the wzi

47 tudied, by pulsed-field gel electrophoresis, multilocus sequence typing and penicillin-binding protei

48 latedness of the isolates was assessed using multilocus sequence typing and phylogenetic analyses.

49 Multilocus sequence typing and pulsed-field gel electrop

50 sely related porA sequences was confirmed by multilocus sequence typing and pulsed-field gel electrop

51 Whole-genome multilocus sequence typing and single nucleotide polymor

52 DNA uptake sequence signatures, metagenomic multilocus sequence typing and strain-specific marker ge

53 Multilocus sequence typing and whole-genome sequence com

54 chain reaction, phylogeny was assigned using multilocus sequence typing, and clonal relatedness was e

55 ermined by pulsed-field gel electrophoresis, multilocus sequence typing, and cmp gene (encoding the m

56 g homologous PFGE clusters were subjected to multilocus sequence typing, and eBURST was used to delin

57 ineage of each GBS isolate was determined by multilocus sequence typing, and isolates were clustered

58 ase genes, pulsed-field gel electrophoresis, multilocus sequence typing, and plasmid analysis were pe

59 ination of pulsed-field gel electrophoresis, multilocus sequence typing, and SCCmec typing.

60 Pulsed-field gel electrophoresis, multilocus sequence typing, and spa typing clustered the

61 Using serotyping, multilocus sequence typing, and whole-genome sequencing

62 gel electrophoresis (PFGE), ribotyping, and multilocus sequence typing are commonly used for this pu

63 Two genotypes were identified by multilocus sequence typing as members of globally dissem

64 ge of I. scapularis-borne Lyme disease using multilocus sequence typing based on bacterial housekeepi

65 mining of this enormous data set to create a multilocus sequence typing-based scheme that can identif

66 We show that emm typing and multilocus sequence typing can be achieved rapidly and e

67 The data obtained for multilocus sequence typing can be used to recognize fung

68 Whole-genome sequencing was used to perform multilocus sequence typing, capsular typing, and identif

69 strategies were used to generate core genome multilocus sequence typing (cgMLST) data.

70 we proposed the development of a core genome multilocus sequence typing (cgMLST) scheme for M. gallis

71 ive whole-genome sequencing with core genome multilocus sequencing typing (cgMLST) analysis for real-

72 DNA probes and multilocus sequence typing confirmed that the organisms

73 Serotype and multilocus sequence typing data for 426 pneumococci date

74 ce types and showed improved congruence with multilocus sequence typing data.

75 Comparison with the multilocus sequence typing database shows that strains o

76 We have reanalyzed the Campylobacter multilocus sequence typing database used in the previous

77 In summary, multilocus sequence typing demonstrated a high degree of

78 Multilocus sequence typing demonstrated that clones A an

79 ltiple strains expressed collagen adherence, multilocus sequence typing demonstrated that the majorit

80 Multilocus sequence typing demonstrates the spread of C.

81 terized by pulsed-field gel electrophoresis; multilocus sequence typing; determination of pbp1a, pbp2

82 ere characterized by susceptibility testing, multilocus sequence typing, DiversiLab, and plasmid anal

83 Multilocus sequence typing effectively distinguished 82

84 Relatedness was assessed by multilocus sequence typing, fitness was evaluated by gro

85 study to compare repetitive-sequence PCR and multilocus sequence typing for genotyping hospital- and

86 We compared Xpert C. difficile/Epi to multilocus sequence typing for identification of C. diff

87 Although the sequences of each of the seven multilocus sequence typing genes were identical in the t

88 brial adhesin gene: H subclone assignments), multilocus sequence typing, gyrA and parC sequence (fluo

89 ST17) were identified for the first time by multilocus sequence typing in an area where bathing had

90 Recent studies using data from multilocus sequence typing indicate that, in many specie

91 Multilocus sequence typing indicates that C. difficile s

92 hole-genome sequencing was used to determine multilocus sequence typing information and identify gene

93 The isolates were resolved by multilocus sequence typing into 16 clones, which cluster

94 A multilocus sequence typing method was also established f

95 es and in three European countries presented multilocus sequence typing (MLST) alleles, sequence type

96 lecular characterization was performed using multilocus sequence typing (MLST) alongside traditional

97 Multilocus sequence typing (MLST) analysis was performed

98 Multilocus sequence typing (MLST) analyzes the internal

99 bicans isolates from 44 different sources by multilocus sequence typing (MLST) and ABC typing of rRNA

100 ovine, porcine, ovine, and canine sources by multilocus sequence typing (MLST) and examined their pro

101 he specificity and sensitivity inferred from multilocus sequence typing (MLST) and genome-wide SNP-ba

102 Multilocus sequence typing (MLST) and multi-virulence-lo

103 In this study, multilocus sequence typing (MLST) and multilocus variabl

104 he same patient were molecularly typed using multilocus sequence typing (MLST) and multispacer sequen

105 Isolates were characterized by multilocus sequence typing (MLST) and outer membrane pro

106 onserotypeable presumptive pneumococci using multilocus sequence typing (MLST) and partial sequencing

107 acterized a diverse collection of strains by multilocus sequence typing (MLST) and performed restrict

108 MRSA isolates were further genotyped using multilocus sequence typing (MLST) and pulsed-field gel e

109 minatory power of PHAT (98%) equaled that of multilocus sequence typing (MLST) and pulsed-field gel e

110 o high-resolution fingerprinting approaches: multilocus sequence typing (MLST) and pulsed-field gel e

111 Multilocus sequence typing (MLST) and pulsed-field gel e

112 virulence-associated genes were analyzed by multilocus sequence typing (MLST) and sequence analysis

113 We have used multilocus sequence typing (MLST) and serotyping to buil

114 Characterization of PVL-MSSA isolates by multilocus sequence typing (MLST) and spa typing in this

115 The data for these isolates included multilocus sequence typing (MLST) and staphylococcal pro

116 genotyping approaches: gyrB gene sequencing, multilocus sequence typing (MLST) and whole genome clust

117 discriminatory power was compared to that of multilocus sequence typing (MLST) and whole-genome optic

118 terizes B. hampsonii using a newly developed multilocus sequence typing (MLST) approach and elucidate

119 In this study, we have used a multilocus sequence typing (MLST) approach employing the

120 resent study compared the recently developed multilocus sequence typing (MLST) approach with a well-e

121 pulsed-field gel electrophoresis (PFGE), and multilocus sequence typing (MLST) based on loci in actA,

122 Multilocus sequence typing (MLST) based on the 16S RNA,

123 etitive sequence-based PCR typing, and rapid multilocus sequence typing (MLST) by electrospray ioniza

124 pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) by using three houseke

125 virulence genes, by which groups similar to multilocus sequence typing (MLST) clonal groups (CGs) co

126 d no strong correlation between CPS type and multilocus sequence typing (MLST) cluster, with the rema

127 Although multilocus sequence typing (MLST) currently represents t

128 Multilocus sequence typing (MLST) data demonstrated that

129 nalysis of the population structure based on multilocus sequence typing (MLST) data derived from the

130 e of computational tools for the analysis of multilocus sequence typing (MLST) data, at http://mgip.b

131 Data derived from the public multilocus sequence typing (MLST) database established a

132 A multilocus sequence typing (MLST) database for V. paraha

133 eles within the current Campylobacter jejuni multilocus sequence typing (MLST) database.

134 Multilocus sequence typing (MLST) demonstrated 21 known

135 pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) for 90 P. aeruginosa i

136 The introduction of multilocus sequence typing (MLST) for the precise charac

137 the association between Opa repertoires and multilocus sequence typing (MLST) genotypes.

138 Multilocus sequence typing (MLST) had a typeability of 1

139 Multilocus sequence typing (MLST) has become the most co

140 Multilocus sequence typing (MLST) has been proven useful

141 Multilocus sequence typing (MLST) has emerged as a power

142 Prior studies using multilocus sequence typing (MLST) have found specific GB

143 Comparison between WGS and multilocus sequence typing (MLST) identified major discr

144 compare the discriminatory power of PFGE to multilocus sequence typing (MLST) in typing Salmonella e

145 ion of Staphylococcus aureus on the basis of multilocus sequence typing (MLST) in which sequence vari

146 he 16S-23S rRNA intergenic spacer region and multilocus sequence typing (MLST) indicated a predominan

147 Multilocus sequence typing (MLST) is a genetic typing to

148 For this reason, multilocus sequence typing (MLST) is an appealing altern

149 Multilocus sequence typing (MLST) is the gold standard g

150 ation, selection, and recombination in seven multilocus sequence typing (MLST) loci from 94 invasive,

151 capsular biosynthetic loci, and 8 targeting multilocus sequence typing (MLST) loci were employed for

152 gold standard" typing method for Salmonella, multilocus sequence typing (MLST) may be more relevant t

153 ld standard" for bacterial molecular typing, multilocus sequence typing (MLST) may offer advantages.

154 The recently developed multilocus sequence typing (MLST) method is based on the

155 e data obtained from the characterization by multilocus sequence typing (MLST) of 334 isolates of S.

156 Multilocus sequence typing (MLST) of Staphylococcus aure

157 We performed multilocus sequence typing (MLST) on 590 pneumococcal is

158 We performed multilocus sequence typing (MLST) on a limited sampling

159 We performed multilocus sequence typing (MLST) on all isolates and se

160 We formulated multilocus sequence typing (MLST) primers with six of th

161 A total of 43 known multilocus sequence typing (MLST) profiles (or single- o

162 Recent multilocus sequence typing (MLST) refined the relatednes

163 ted sequences of the three genes agreed with multilocus sequence typing (MLST) results for typing of

164 Multilocus sequence typing (MLST) revealed 24 sequence t

165 pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) revealed a high level

166 Multilocus sequence typing (MLST) revealed sequence type

167 Development of a multilocus sequence typing (MLST) scheme based on six ho

168 We, therefore, developed a multilocus sequence typing (MLST) scheme for B. burgdorf

169 A multilocus sequence typing (MLST) scheme for M. pneumoni

170 Here we describe a multilocus sequence typing (MLST) scheme for S. suis dev

171 Copenhagen) was initially used to develop a multilocus sequence typing (MLST) scheme for Salmonella

172 In this work, we describe a multilocus sequence typing (MLST) scheme for V. parahaem

173 A multilocus sequence typing (MLST) scheme that uses the s

174 of the genetic diversity of this pathogen, a multilocus sequence typing (MLST) scheme was developed a

175 A single multilocus sequence typing (MLST) scheme was developed f

176 nnii isolates to compare the robustness of a multilocus sequence typing (MLST) scheme, based on conse

177 In this study, we introduce a multilocus sequence typing (MLST) scheme, comprised of s

178 Using a nine-gene multilocus sequence typing (MLST) scheme, we identified

179 re of this genus, we developed a genus-level multilocus sequence typing (MLST) scheme.

180 e identified and used to develop an expanded multilocus sequence typing (MLST) scheme.

181 d 167 isolates into 39 groups and subsequent multilocus sequence typing (MLST) separated a subset of

182 Similarly, no multilocus sequence typing (MLST) sequence type (ST) was

183 hypothesis by performing the first extensive multilocus sequence typing (MLST) survey of plumbing dra

184 clades are assigned to ST131 by the Achtman multilocus sequence typing (MLST) system and a screening

185 A multilocus sequence typing (MLST) system has been report

186 A multilocus sequence typing (MLST) system was developed f

187 pulsed-field gel electrophoresis (PFGE), and multilocus sequence typing (MLST) to characterize them a

188 Here, we used multilocus sequence typing (MLST) to compare the molecul

189 from a London hospital and characterized by multilocus sequence typing (MLST) to determine the ident

190 Multilocus sequence typing (MLST) together with macrores

191 Multilocus sequence typing (MLST) was able to accurately

192 Nested multilocus sequence typing (MLST) was employed for case

193 Multilocus sequence typing (MLST) was performed on 107 B

194 Multilocus sequence typing (MLST) was proposed in 1998 a

195 repetitive-sequence-based PCR (rep-PCR) and multilocus sequence typing (MLST) were performed.

196 pulsed-field gel electrophoresis (PFGE), and multilocus sequence typing (MLST) were performed.

197 ncluded PCR detection of ply and psaA genes, multilocus sequence typing (MLST), 16S rRNA gene sequenc

198 Multilocus sequence typing (MLST), a sequence-based meth

199 ) were identified as sequence type (ST) 8 by multilocus sequence typing (MLST), all of which are char

200 isolates from Thailand, which were typed by multilocus sequence typing (MLST), and 44 isolates from

201 ing pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and clustered regular

202 notyped by pulsed field gel electrophoresis, multilocus sequence typing (MLST), and molecular capsule

203 riable number tandem repeat analysis (MLVA), multilocus sequence typing (MLST), and pertactin gene (p

204 ng, restriction endonuclease analysis (REA), multilocus sequence typing (MLST), and pulsed-field gel

205 imicrobial susceptibility profiles, BOX-PCR, multilocus sequence typing (MLST), and pulsed-field gel

206 ing pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and serotyping.

207 FGE), Staphylococcus protein A (spa) typing, multilocus sequence typing (MLST), and staphylococcal ca

208 esis, staphylococcal protein A (spa) typing, multilocus sequence typing (MLST), and staphylococcal ca

209 by pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and staphylococcal pr

210 The isolates underwent multilocus sequence typing (MLST), as well as assays for

211 ed the clustering of esp-positive strains by multilocus sequence typing (MLST), but surprisingly, all

212 of sequence-based typing approaches, such as multilocus sequence typing (MLST), by substantially incr

213 has a resolving power comparable to that of multilocus sequence typing (MLST), is applicable to mixt

214 Sequence-based typing (SBT), analogous to multilocus sequence typing (MLST), is the current "gold

215 ed typing technique most recently evaluated, multilocus sequence typing (MLST), often lacks discrimin

216 ing pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), pbp1a PCR restriction

217 is (PFGE), repetitive element PCR (Rep-PCR), multilocus sequence typing (MLST), plasmid profiling, an

218 resis (PFGE) profiles were analyzed by using multilocus sequence typing (MLST), plasmid profiling, hy

219 reus strains in order to assess the value of multilocus sequence typing (MLST), pulsed-field gel elec

220 during 2002 to 2008 in Great Britain, using multilocus sequence typing (MLST), pulsed-field gel elec

221 lution antimicrobial susceptibility testing, multilocus sequence typing (MLST), spa typing, SCCmec ty

222 Using multilocus sequence typing (MLST), we have compared (i)

223 Multilocus sequence typing (MLST), which defines strains

224 2016 with the isolates confirmed as ST398 by multilocus sequence typing (MLST), which prompted retros

225 sive) from 2011 to 2014 was characterized by multilocus sequence typing (MLST).

226 Select isolates then underwent multilocus sequence typing (MLST).

227 pulsed-field gel electrophoresis (PFGE), and multilocus sequence typing (MLST).

228 ribotyping, genome restriction mapping, and multilocus sequence typing (MLST).

229 signed to amplify the same genes analyzed in multilocus sequence typing (MLST).

230 ied fragment length polymorphisms (AFLP) and multilocus sequence typing (MLST).

231 pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST).

232 erized using emm typing, sof sequencing, and multilocus sequence typing (MLST).

233 ewbould 305 (NCIMB 702892), were analyzed by multilocus sequence typing (MLST).

234 genomic clades of Bp, largely congruent with multilocus sequence typing (MLST).

235 onsistent with genomotypes assigned by using multilocus sequence typing (MLST).

236 Selected isolates were subjected to multilocus sequence typing (MLST).

237 raditional method of amplicon sequencing for multilocus sequence typing (MLST).

238 in China, Sweden, and Egypt were subtyped by multilocus sequence typing (MLST).

239 y repetitive sequence-based PCR (repPCR) and multilocus sequence typing (MLST).

240 ism analysis (RFLP), PCR fingerprinting, and multilocus sequence typing (MLST).

241 by using polymerase chain reaction (PCR) and multilocus sequence typing (MLST).

242 solates causing meningitis were genotyped by multilocus sequence typing (MLST).

243 ups within clonal groups defined by standard multilocus sequence typing (MLST).

244 Selected strains were evaluated by multilocus sequence typing (MLST).

245 owing: conventional, extended, and ribosomal multilocus sequence typing (MLST, eMLST, and rMLST); ant

246 for all CPSs and selected protein antigens, multilocus sequencing typing (MLST), and pulsed-field ge

247 ltiple different ancestral origins (based on multilocus sequence typing [MLST] analysis), and did not

248 rized into six sequence types (determined by multilocus sequence typing [MLST]) and 79 pulsed-field g

249 sequence-based methods for bacterial typing (multilocus sequence typing; MLST) allow rapid and global

250 burgdorferi diversification was confirmed by multilocus sequence typing of 18 clinical isolates at 18

251 Multilocus sequence typing of Borrelia hermsii isolates

252 population genetic exchange was confirmed by multilocus sequence typing of isolates and of uncultivat

253 omic groups identified among the isolates by multilocus sequence typing of the 16S rRNA, flaB, gyrB,

254 analysis of PCR amplified16S rRNA genes, and multilocus sequence typing of three housekeeping genes c

255 We performed susceptibility testing and multilocus sequence typing on 528 (95%) of 554 serotype

256 eptibilities were recorded, and we performed multilocus sequence typing on a sample of MRSA isolates.

257 s were serotyped; susceptibility testing and multilocus sequence typing on Salmonella enterica serova

258 as a strain discrimination tool than either multilocus sequence typing or 23S ribosomal gene typing

259 s of clinical M. abscessus isolates utilized multilocus sequence typing or pulsed-field gel electroph

260 6S-23S ribosomal RNA intergenic spacer type, multilocus sequence typing, or both.

261 Isolates underwent PCR-based phylotyping, multilocus sequence typing, PCR-based detection of 55 vi

262 Multilocus sequence typing performed on DNA extracted fr

263 re not easily differentiated on the basis of multilocus sequence typing, phylogenetic typing, or carr

264 histories distinct from those predicted by a multilocus sequence typing phylogeny based on partial se

265 iers, and blood cultures were analyzed using multilocus sequence typing, phylotyping, ESBL genes, pla

266 s pulsed-field gel electrophoresis (PFGE) or multilocus sequence typing profiles to that of known epi

267 from the patient's blood and analyzed using multilocus sequence typing, protein gel electrophoresis

268 ping by pulsed-field gel electrophoresis and multilocus sequence typing revealed that the PVL-positiv

269 Ribosomal multilocus sequence typing (rMLST) using ribosomal prote

270 ics of the strains, which were determined by multilocus sequence typing, sap typing, and the presence

271 We recently described a multilocus sequence typing scheme (MLST) for P. acnes ba

272 We have created the first multilocus sequence typing scheme (MLST) for P. larvae,

273 in the current Burkholderia cepacia complex multilocus sequence typing scheme were redesigned to (i)

274 ity within the species based on the existing multilocus sequence typing scheme.

275 ation showed that the arcC genes used in the multilocus sequence typing schemes of these two species

276 smetic injections and the first report using multilocus sequence typing sequence data for determining

277 electrophoresis) patterns and the same MLST (multilocus sequence typing) sequence type (ST-1068) rega

278 Multilocus sequence typing showed both NVE and PVE isola

279 Multilocus sequence typing showed that most biotype V is

280 Also, use of multilocus sequence typing showed that some of the seque

281 tion of several molecular typing techniques: multilocus sequence typing, spaA typing, pulsed-field ge

282 e development and evaluation of an effective multilocus sequence typing strategy for M. xenopi.

283 By use of multilocus sequence typing, Streptococcus pneumoniae iso

284 lectrophoresis (PFGE); however, conventional multilocus sequence typing (targeting 6 conserved loci)

285 Here we demonstrate by multilocus sequence typing that enterotoxigenic E. coli

286 Using multilocus sequence typing to assess relatedness at the

287 We used multilocus sequence typing to characterize isolates of S

288 We have used serogrouping and multilocus sequence typing to characterize meningococci

289 In a prior study, we utilized multilocus sequence typing to describe A. lentulus as a

290 rulence of pneumococcal populations, we used multilocus sequence typing to identify the major clones

291 bility among replacing serotypes, we applied multilocus sequence typing to samples of 126 and 222 pne

292 Molecular techniques such as spa typing and multilocus sequence typing use DNA sequence data for dif

293 Multilocus sequence typing uses nucleotide sequence from

294 ing AscI and ApaI) and better than that with multilocus sequence typing (using six housekeeping genes

295 Multilocus sequence typing was also performed.

296 Multilocus sequence typing was performed on a sampling o

297 Multilocus sequence typing was successfully completed on

298 In this study, multilocus sequence typing was used to investigate genot

299 Using multilocus sequence typing, we identified another strain

300 Using multilocus sequence typing, we investigated the genetic