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1 n trees, linear discriminate analysis, and k-nearest neighbor).
2 m pairs at a specific Pd-Pd distance with Au nearest-neighbors).
3 Forest, Naive Bayes, Logistic Regression, K-Nearest Neighbor.
4 als interactions with the side chains of its nearest neighbor.
5 t exclusively involve properties of a node's nearest neighbors.
6 ion, whose sign depends on the number of its nearest neighbors.
7 trations, size hierarchies and the growth of nearest neighbors.
8 inished by merging small clusters into their nearest neighbors.
9 les, and small modules are merged into their nearest neighbors.
10 purity profiles prior to classification by K-nearest neighbors.
11 on in the duplex and the identity of the non-nearest neighbors.
12 s containing P*U pairs adjacent to different nearest neighbors.
13 es, linear discriminant analysis (LDA) and 3-nearest-neighbor (3NN), and for filter and wrapper featu
15 Groups were propensity matched using a 2:1 nearest neighbor algorithm and short-term outcomes were
16 , we have several useful insights: (1) the k-nearest neighbor algorithm is an efficient and effective
18 sity score matching was conducted by using a nearest-neighbor algorithm (1:1) to account for pretreat
19 erent machine learning approaches, including nearest neighbor algorithms, one-class classifiers, and
22 mismatch, the nearest neighbors, and the non-nearest neighbors, along with the effects of the single
23 ructure, permitting a rapid search for the k nearest neighbors among {x(j)} for an arbitrary point x
24 peripheral hydrophilic subunits, we combined nearest neighbor analyses by intermolecular disulfide bo
25 e stator by use of monoclonal antibodies and nearest neighbor analyses via intersubunit disulfide bon
26 ith image segmentation, centroid mapping and nearest-neighbor analyses in open-source environments, 3
35 , our imputation comparisons indicate that k-nearest neighbor and singular value decomposition yielde
36 or rates computed using the Random Forest, k Nearest Neighbor and Support Vector Machine classifiers
38 imental results on 18 subjects, using both k nearest neighbors and support vector machine classifiers
41 which isolates the target cytosine from its nearest neighbors and thereby facilitates its extrusion
42 both standard 'guilt-by-association' (i.e., Nearest-Neighbor) and more refined Markov random field m
43 o the identities of the single mismatch, the nearest neighbors, and the non-nearest neighbors, along
44 ioning tree for sub-linear time searching of nearest neighbors, and then use a new multiple-pair merg
45 roportion of offspring are dropped on second-nearest neighbors, and why triplet approximation is able
49 temperatures using approximative formulae or Nearest-Neighbor approaches, where one can select differ
50 optimize the local sequence identity or the nearest-neighbor approximation of the change in free ene
52 on employing dispersal to nearest and second-nearest neighbors, as well as long-distance dispersal ac
53 tion, allowing selective coupling beyond the nearest-neighbor, at separations of hundreds of nanomete
54 n of nucleotide edges for the mismatched and nearest neighbor base pairs are described and compared,
55 s, neither the identity of the bulge nor the nearest-neighbor base pairs had an effect on the influen
56 This accuracy depended upon the identity of nearest neighbor bases surrounding the CG dinucleotide.
58 in large flocks respond to a fixed number of nearest neighbors, but until now it was not understood w
59 ) pi MO is balanced by the fact that the non-nearest-neighbor, C-C interactions in (CO)(4) are antibo
60 C and C --> N) tie the helix together, with nearest-neighbor C7 rings turning the backbone so that i
61 when the particles simply "rattle" in their nearest-neighbor cages, are interrupted by abrupt "avala
62 can be attributed to the p electrons of the nearest-neighbor carbon atoms around the VSiVC divacanci
63 due to the much larger distances between non-nearest-neighbor carbons in (CO)(6) than in (CO)(4).
64 ) is that interactions between 2p AOs on non-nearest-neighbor carbons, which stabilize the a(2u) pi M
66 ctions for in silico fragmentation software, nearest neighbor chemical similarity scoring, random for
68 ed splat label were used to train a linear k-nearest neighbor classifier that learnt the color proper
69 n in a set of controlled experiments using a nearest neighbor classifier that uses PSI-BLAST similari
70 ates the resident's performance was within 1 nearest-neighbor classifier of experts after ASSET train
71 oportions of the bond-orientational order of nearest neighbor clusters in colloidal packings by stati
72 cal2a x c expansion of the nuclear cell, and nearest-neighbor Co(2+) moments couple antiferromagnetic
73 results to those of the same single mismatch-nearest neighbor combination centrally located have allo
74 odynamic contributions of 13 single mismatch-nearest neighbor combinations are reported, but only nin
75 stabilization is found for most of the other nearest neighbor combinations involving CA pairs (e.g.,
76 routine, nearest neighbor parameters for all nearest neighbor combinations of I x U pairs and an addi
77 'YRY3'/3'RYR5', and 5'RRY3'/3'YYR5' mismatch-nearest neighbor combinations, respectively, when A and
78 analysis (P < .0005) and distance to the kth nearest neighbor compared with random distributions, obt
79 rough contig-to-gene identification by BLAST nearest-neighbor comparison, and through single-contig r
80 scope of the library to include spectra of "nearest-neighbor" compounds that differ from library com
81 y applied allowing the detection of distinct nearest neighbor contacts for the HPMC-E3 rich preparati
82 A, which are attributed to C-C, C-N and C-O nearest neighbor contacts present in drug-drug interacti
84 mutant cycles on base pairs having identical nearest-neighbor contexts but located in either external
85 inding densities, indicating long-range, non-nearest neighbor cooperative restriction of filament rot
86 result, spatial correlations, as assayed by nearest-neighbor correlation and functional connectivity
89 pin-orbital coupling or a frustrating second-nearest-neighbor coupling is expected to be a source of
90 ces, such as abc and abca, have the stronger nearest-neighbor coupling which imply the popular of per
93 y shifts of the local carbonyl groups due to nearest neighbor couplings and environmental factors are
94 st, followed by relatively slow (mus-ms) non-nearest neighbor cross-surface electron transfer from -R
97 is unavailable, we find that the sum of the nearest neighbors' degree is a reliable local proxy for
98 include efficient algorithms for overlap and nearest neighbor detection, coverage calculation and oth
99 and strain as well as Young's moduli on the nearest neighbor distance and defect types is examined.
100 To calculate diversity, we use the mean nearest neighbor distance of crosses plotted in trait sp
103 re more condensed with a 20% smaller average nearest-neighbor distance and a 30% higher nucleosome de
107 r to minor axes of the best-fit ellipse) and nearest neighbor distances were calculated for each sess
108 each other by enabling quantification of the nearest-neighbor distribution of a ligand mixture in a m
109 AP solvent exposure to be distinguished from nearest neighbor effects or environmental influences on
111 e presence of confounding influences such as nearest-neighbor effects, side-chain conformation, elect
114 orithm that processes data sets using fast k-nearest-neighbor estimation of cell event density and ar
115 s (C-W) temperature of theta = -125 K, and a nearest-neighbor exchange coupling constant of J(NN) = -
117 lues consistent with perturbations exceeding nearest-neighbor expectations that are enthalpic in orig
118 Signal intensities measured with each gene's nearest-neighbor features were subsequently averaged to
120 ence of third-neighbor antiferromagnetic and nearest-neighbor ferromagnetic exchange interactions can
121 Affiliative interaction, proximity, and nearest neighbors for 6 captive female giraffe living in
122 )} in R(d), the algorithm attempts to find k nearest neighbors for each of x(j), where k is a user-sp
123 nd sparse discriminant analysis (SDA) with k-nearest neighbors for imputation for varying mechanism a
124 h preferential positions at first and second nearest neighbors for interstitial and substitutional Sr
125 ork topology that maximizes the regions with nearest-neighbor framework atom distances from 3 to 4.5
126 ng of transcription factor ARBORKNOX1 to the nearest neighbor genes in a pre-calculated co-expression
127 rlapping plasmonic fields emanating from the nearest-neighbor gold nanoparticle nanocarriers and crea
130 clear geometry in which one MOPV and its two nearest neighbors have a nuclear equilibrium that differ
131 op 1-stem 2 region reveal (1) the individual nearest-neighbor hydrogen bonding (INN-HB) model provide
132 el was evaluated by comparing a drug and its nearest neighbor (i.e., a drug pair) for common indicati
134 se with 10(5) samples, GEMINI identifies the nearest neighbor in 0.05 sec compared to a brute force s
135 at the mutated position and it's ordered six nearest neighbors in the 3-dimensional (3D) protein stru
137 revealed that both peptides favor Chol as a nearest-neighbor in liquid-disordered (ld) bilayers to t
138 e effect is expected in a 1D antiferromagnet nearest-neighbors interacting Ising chain in the presenc
139 proach allowed us to distinguish alternative nearest-neighbor interaction models, and quantifies the
140 tically a four-site square lattice with next-nearest neighbor interactions and a six-site checkerboar
141 d molecular dynamics (MD) simulations of the nearest neighbor interactions combined with a Genalized
145 ccurately described by a model consisting of nearest-neighbor interactions and additive loop and bulg
146 lo-based simulation protocol that allows for nearest-neighbor interactions between adjacent binding s
147 different sequence) reveal the importance of nearest-neighbor interactions in the emissive behavior.
148 rains are created with effectively repulsive nearest-neighbor interactions or rather evolve into such
149 Cholesterol stabilizes the L(o) state by nearest-neighbor interactions, giving rise to the appear
150 by Monte Carlo simulations on a lattice with nearest-neighbor interactions, which are derived from ex
154 econd, the branch lengths of all the simple (nearest neighbor interchange) rearrangements of a tree c
159 endent Modelling of Class Analogy (SIMCA), k-Nearest Neighbor (k-NN), Principal Component Analysis fo
160 nt Modeling of Class Analogies (SIMCA) and K-Nearest Neighbors (k-NN) were applied to the four chroma
161 hods, namely Support Vector Machine (SVM), k-Nearest Neighbors (k-NN), and Decision Tree, were employ
162 ast square discriminant analysis (PLS-DA), k-nearest neighbors (k-NN), support vector machine (SVM) a
163 classified 50.2% of the samples correctly, K-nearest neighbor (KNN) 86%, and soft independent modelin
164 factors the best available methods utilize k-nearest neighbor (KNN) algorithms to make specificity pr
165 and a vector space model-based approach, a K-Nearest Neighbor (KNN) approach and MTI] in terms of rep
166 Here we present a modified version of the K-nearest neighbor (KNN) approach which accounts for trunc
170 dels for 48 GGTIs using variable selection k nearest neighbor (kNN), automated lazy learning (ALL), a
171 In all cases studied, CLPP accompanied by k-Nearest Neighbors (kNN) algorithm was found to outperfor
173 ast-squares discriminant analysis (PLSDA), K nearest neighbors (KNN), and support vector machines dis
174 mance of Artificial Neural Networks (ANN), K-Nearest Neighbors (KNN), Linear Discriminant Analysis (L
175 (PCA), linear discriminant analysis (LDA), k-nearest neighbors (kNN), partial least square-discrimina
176 for assisting MeSH annotation, which uses k-nearest neighbors (KNN), pattern matching and indexing r
177 ation is frequently based on a vote of the K-nearest-neighbor (KNN) haplotypes, but this technique is
178 ayer properties overall, except for the four nearest neighboring lipids, while the effect of PCB 52 i
179 f minimum substitution, mean substitution, k-nearest neighbors, local least squares regression, Bayes
180 he balance of competing interactions between nearest-neighbor magnetic moments can be directly contro
182 iple confounders using linear regression and nearest neighbor matching based on propensity score esti
185 To approach this problem, we utilized a nearest neighbor method which seamlessly integrates homo
186 combines a full-coverage but lower accuracy nearest neighbor method with higher accuracy but reduced
188 al calculations reveal not only the expected nearest-neighbor Mn(III)2 exchange couplings via superex
189 ation constant that is computed with current nearest neighbor model and existing parameters, and only
190 els (the statistical regression model, the K nearest neighbor model and the modified version of the b
191 ary structure is typically predicted using a nearest neighbor model based on free energy parameters.
192 otide thermodynamic stability derived by the nearest neighbor model representation and (v) nucleic ac
193 ature with mismatches, computed based on the nearest neighbor model via an efficient fractional progr
194 ignals according to the positional dependent nearest neighbor model, which gives reasonable estimates
195 The results allow for the development of a nearest neighbor model, which improves the predication o
196 served the following: (1) In most cases, the nearest-neighbor model accurately predicted the free ene
199 e position) was found in accordance with the nearest-neighbor model, where the considered configurati
200 employing principal component analysis and K-nearest neighbor modeling, we classified the time-resolv
201 ic penalty, not captured by state-of-the-art nearest neighbor models of DNA, due to the additional ov
202 hese homozygotes by T(m) even though current nearest neighbor models predict that the two homozygous
203 s Analysis (CoMSIA) and variable-selection k-nearest neighbor models, from which 3D-molecular fields
206 this study, a modified positional dependent nearest neighbor (MPDNN) model was constructed to adjust
207 n this paper, we describe the Multi-Source k-Nearest Neighbor (MS-kNN) algorithm for function predict
208 assification trees, discriminant analysis, k-Nearest neighbor, naive Bayes, and support vector machin
209 zation, whereas the shell was simulated as a nearest neighbor network promoting local GABAergic conne
211 mise increasingly accurate recovery of RNA's nearest-neighbor (NN) free-energy parameters, but these
214 Ti/Ge distribution has been deduced in next nearest neighbor (NNN) sites that surround tetrahedral P
215 r nucleotides, suggesting that the effect of nearest-neighbor nucleotides on repair of 7MeGs in the c
216 of 7MeGs by dimethyl sulfate is affected by nearest-neighbor nucleotides, being enhanced at sites ne
218 lycosylase in vitro is similarly affected by nearest-neighbor nucleotides, suggesting that the effect
219 Regardless of sensory area, random and k-nearest neighbors null graphs failed to capture the stru
222 rithm for function prediction, which finds k-nearest neighbors of a query protein based on different
223 o account for interactions between the first nearest neighbors of Ca, Pb and Sb in the ternary Ca-Sb-
228 nt, mostly contributed by 2p orbitals of the nearest-neighbor oxygen atom (O(NN)) with two dangling b
229 rmodynamic dataset of single mismatches, and nearest neighbor parameters are derived for an A-U pair
230 ltaG degrees 37,loop and DeltaH degrees loop nearest neighbor parameters derived here were compared t
231 mplete linear least-squares fitting routine, nearest neighbor parameters for all nearest neighbor com
233 der to determine unique linearly independent nearest neighbor parameters for I x U pairs, four duplex
234 for 29 RNA duplexes with GU pairs to improve nearest neighbor parameters for predicting stabilities o
235 Both the experimental thermodynamics and the nearest neighbor parameters reported here can be used to
236 ssion, the entire dataset was used to derive nearest neighbor parameters that can be used to predict
241 PE pseudo-free energies, in conjunction with nearest neighbor parameters, predicts the secondary stru
242 omposition to determine the eight non-unique nearest-neighbor parameters for each internal mismatch.
243 ches, where one can select different sets of Nearest-Neighbor parameters, corrections and formulae.
245 taG(Bulge) values consistent with localized, nearest neighbor perturbations arising from unfavorable
246 gh the integration of predictions from the k nearest neighbor phenologs, comparing classifiers and we
247 residues at the cleavage site (P1, P1') and nearest-neighbor positions (P2, P2') and their positiona
248 rgetically convenient for them to pair up in nearest-neighbor positions taking a D2-D2 or D2-D1 confi
250 t a randomized algorithm for the approximate nearest neighbor problem in d-dimensional Euclidean spac
251 possibility of treatment selection bias, 1:1 nearest neighbor propensity score matching was performed
252 uboctahedral structure and the average first nearest-neighbor Pt-Pt bond length increases by 3%, agre
253 rate calculations of the ground state of the nearest-neighbor quantum spin S = 1/2 Heisenberg antifer
254 dding to read mapping, thus rephrasing it to nearest neighbor queries in a q-gram frequency vector sp
259 iting the nonlocal atomic interaction in the nearest neighbor region, and the nonlocal coefficient is
260 ivation that accounts for interactions among nearest-neighbor regulatory units (RUs) in a spatially e
261 alysis (matching ratio, method to choose the nearest neighbors, replacement and method for statistica
262 concentrations is cooperatively inhibited by nearest neighbors, requiring Ca(2+) binding to >25% of R
264 nd TiO2(e(-)) was followed by rapid (<20 ns) nearest-neighbor -Ru(II)OH2(2+) to -Ru(III)P(3+) electro
267 he benefits of variance and distance between nearest-neighbor(s) minimization, providing a solution f
268 es this space using an efficient index-aware nearest neighbor search method based on locality sensiti
271 30 most frequently occurring single mismatch-nearest neighbor sequence combinations found in experime
273 We have found that a mismatch embedded in a nearest-neighbor sequence context containing symmetric 3
274 l, hidden Markov model, logical algorithm, k-nearest neighbor, single value decomposition, and random
276 and 420 K reveals emerging asymmetry in the nearest-neighbor Sn-Br correlations, consistent with dyn
277 , we describe a novel algorithm named shared nearest neighbor (SNN)-Cliq that clusters single-cell tr
278 Dicke-Ising model with an antiferromagnetic nearest-neighbor spin-spin interaction in circuit QED wi
279 photon interaction and the antiferromagnetic nearest-neighbor spin-spin interaction, and then predict
280 mic and experimental parameters that include nearest neighbor stacking energies, loop entropy effects
281 els of binding affinity, which depend on the nearest-neighbor stacking interactions in addition to ba
283 nt crystal in which the P atoms form a third-nearest-neighbor sublattice and "In-P" dimers are orient
284 ing Diagonal Linear Discriminant Analysis, k-Nearest Neighbor, Support Vector Machine and Random Fore
286 dynamics of plug trains: Interactions among nearest neighbors take place through the wetting films a
287 SNN-Cliq utilizes the concept of shared nearest neighbor that shows advantages in handling high-
288 scribing the population of distances between nearest neighbors: the lengths (di(o)) of distances and
289 nucleotide-melting temperatures, including a nearest-neighbor thermodynamic model for melting tempera
290 prediction methods depend on the underlying nearest-neighbor thermodynamic model remains a fundament
292 in immunocompromised individuals and is the nearest neighbor to the causative agent of tularemia and
293 d distance (metric range), a fixed number of nearest neighbors (topological range), a 'shell' of near
298 CA pair forms at pH 7 in the CG/AA and CA/AA nearest neighbors when the CA pair is the first noncanon
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