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1 bic behavior, our data provide evidence that non-coding, although functional GLRB gene polymorphisms
5 ther infer the biological functions of those non-coding associated genes based on their co-expressed
8 ractions for the analysis of both coding and non-coding disease-associated mutations to obtain mechan
9 e associations are preferentially located in non-coding DNA regions and in particular in tissue-speci
14 been found, such as novel genes arising from non-coding DNA, chimeric fusions, and lateral gene trans
15 odel of mutational heterogeneity facilitates non-coding driver identification and integrative analysi
17 Here, we develop a statistically founded non-coding driver-detection method, ncdDetect, which inc
18 ments, collectively referred to as conserved non-coding elements (CNEs), are non-randomly distributed
19 a suggest that mutations affecting conserved non-coding elements of PITX2 may constitute an important
21 with common human diseases map to enhancers, non-coding elements that shape cell-type-specific transc
22 e of tightly regulated, biochemically active non-coding elements, such as transcription factor-bindin
25 studied differentially expressed coding and non-coding genes in relation to systemic sclerosis patho
26 ns in the expression of both coding and long non-coding genes in the sub-chronic and chronic stages o
27 ential for termination of protein-coding and non-coding genes through interaction with S2-phosphoryla
29 erstand the mechanisms by which variation in non-coding genetic sequences contributes to disease.
31 d neurons helps functional interpretation of non-coding genetic variants associated with these diseas
32 ill improve the functional interpretation of non-coding genetic variants in the molecular genetic dis
33 s to predict pathogenicity of synonymous and non-coding genetic variants, and provide a web server of
37 milies is caused by tandem duplications in a non-coding genomic region containing an active enhancer
38 e identified sequence variants, localized to non-coding genomic regions, associated with kidney funct
44 ased approach identified two long intergenic non-coding(linc)RNAs, lincRNA-Cox2 and lincRNA-AK170409,
47 more likely to disrupt coding and regulatory non-coding loci, particularly when truncating constraine
48 ing peripheral axon injury, dysregulation of non-coding microRNAs (miRs) occurs in dorsal root gangli
51 The heavily mutated landscape of coding and non-coding mutations in cutaneous melanoma resolved nove
53 d identifies regions that potentially harbor non-coding mutations underlying disorders of sexual deve
54 lowed the annotation of more than 13 million non-coding mutations, 18 029 gene fusions, 187 429 genom
56 association was found between ACQ and single non-coding nucleotide variants of the GLRB gene (rs78726
57 stimating the relative rate parameter of the non-coding partition in a heterochronous dataset, MCMC i
59 benign prostate transcriptomes to identify a non-coding polymorphic regulatory element at 7p14.3 that
61 gene expression analysis revealed that this non-coding region alteration is associated with the sign
62 ession of expanded CCUG repeat RNAs from the non-coding region of the CCHC-type zinc finger nucleic a
63 with high CpG/UpA sequences inserted into a non-coding region were similarly replication defective.
64 eletion of any intergenic or deeply intronic non-coding region, indicating that proximal regulatory s
66 o A:T, their distribution between coding and non-coding regions and synonymous-to-non-synonymous muta
69 icant fraction of Pol III transcription from non-coding regions is not subjected to Xist-mediated tra
70 entifying these transcriptional regions from non-coding regions is the first step towards lincRNA rec
71 ur model specifically studies the effects of non-coding regions of DNA (in this case, CpG sites) on m
73 a statistical approach to isolate coding and non-coding regions of the cancer genome that appear enri
74 genes, aberrant enhancer element activity at non-coding regions of the genome is a key driver of tumo
75 For somatic point mutations in coding and non-coding regions of the genome, we propose CScape, an
76 ce, especially chromosomal rearrangements in non-coding regions of the human genome, remains one of t
80 ne or two protein-coding genes and conserved non-coding regions putatively involved in replication an
81 genomic regions and also showed that defined non-coding regions, such as first introns of genes and r
82 lanced accuracy in coding regions and 70% in non-coding regions, while even higher accuracy may be ac
87 our work provided a better understanding of non-coding regulatory mechanisms of transcriptomics and
90 lopment and disorder, variation that affects non-coding regulatory regions of the genome is likely to
92 tance of 3 prime untranslated region (3'UTR) non-coding regulatory variants across neurodevelopmental
93 rovide a comprehensive catalog of functional non-coding regulatory variants that may be responsible f
94 indings show the importance of investigating non-coding regulatory variants when determining risk fac
96 de association studies previously identified non-coding risk variants associated with PCa and melanom
97 on studies have identified a great number of non-coding risk variants for colorectal cancer (CRC).
98 nct messenger RNA (mRNA) and long intergenic non-coding RNA (lincRNA) profiles compared to hepatocell
99 that the mutation and dysregulation of long non-coding RNA (lncRNA) are associated with numerous dis
104 also binds and regulates the levels of long non-coding RNA (lncRNA) Neat1 and together with PABPN1 i
106 cis-regulatory element demarcated by a long non-coding RNA (lncRNA) that controls the function and l
107 tes with the expression of an antisense long non-coding RNA (lncRNA) that has previously been shown t
111 ly, ZNF750 promoted the expression of a long non-coding RNA (TINCR), which mediated both cancer-inhib
112 Here we identify FILNC1 (FoxO-induced long non-coding RNA 1) as an energy stress-induced long non-c
118 ctive specific transcript), a prototype long non-coding RNA essential for establishing X chromosome i
119 ress FoxOs induce the expression of the long non-coding RNA FILNC1, which inhibits survival of RCC by
121 , and a recent study indicated that the long non-coding RNA HOX transcript antisense RNA (HOTAIR) is
122 the first time an important role of a long, non-coding RNA in antigenic variation and demonstrated a
123 T and suggest a function for major satellite non-coding RNA in the organization of an RNA-nucleosome
124 In addition, we annotated various classes of non-coding RNA including microRNA, long intergenic RNA,
125 RNA processing machinery to cleave its small non-coding RNA into a 22-nt RNA fragment, Sal-1, which
127 criptional profiling, we found that the long non-coding RNA MIR100HG and two embedded microRNAs, miR-
128 hesis, processing and function of coding and non-coding RNA molecules and their interacting proteins
129 lar signaling, and microRNAs which are small non-coding RNA molecules that function in post-transcrip
130 relocalized the Bcl11b enhancer identified a non-coding RNA named ThymoD (thymocyte differentiation f
133 of differentially expressed genes and their non-coding RNA partners, long noncoding RNAs and microRN
135 eate a chromatin environment that influences non-coding RNA production, DNA methylation, and transcri
139 c disorders.Brain cytoplasmic (BC1) RNA is a non-coding RNA that has been implicated in translational
141 characterization of a novel long intergenic non-coding RNA with MyoD-regulated and skeletal muscle-r
145 that satellite DNA, and corresponding small non-coding RNA, helps the dosage compensation machinery
147 Here, we describe an unexpected role in non-coding RNA-directed DNA methylation in Arabidopsis t
148 ere, recent advances in our understanding of non-coding RNA-mediated regulation of skin development a
151 s, expresses seven small nuclear uracil-rich non-coding RNAs (called HSURs) in latently infected cell
152 erase III (Pol III) transcribes medium-sized non-coding RNAs (collectively termed Pol III genes).
168 In particular, the biological roles of long non-coding RNAs (lncRNAs) have never been characterized
169 urther, ethanol-induced upregulation of long non-coding RNAs (lncRNAs) HOTAIR and MALAT1 in endotheli
170 over, through screening hypoxia-related long non-coding RNAs (lncRNAs) in PDK1-positive tissue, we fi
171 the transcription of a wide variety of long non-coding RNAs (lncRNAs) in the genomes of several orga
172 tabases indicated similarity with plant long non-coding RNAs (lncRNAs) involved in splicing regulatio
179 espite the overwhelming number of human long non-coding RNAs (lncRNAs) reported so far, little is kno
180 rts have vastly expanded the catalog of long non-coding RNAs (lncRNAs) with varying evolutionary cons
181 a cell-type-specific manner, producing long non-coding RNAs (lncRNAs), rather than protein-coding tr
182 h as small nucleolar RNAs (snoRNAs) and long non-coding RNAs (lncRNAs), undergo trans-splicing and po
191 hereas a subset of gene transcripts and long-non-coding RNAs adjacent to TE insertions are affected b
193 eover, we identify multiple neurite-targeted non-coding RNAs and RNA-binding proteins with potential
194 together with coding genes, (antisense) long non-coding RNAs are deregulated in skin tissue of system
196 s in the folding and regulatory functions of non-coding RNAs but their structure proves difficult to
197 d therapeutic targets against gastric cancer.Non-coding RNAs can modify the expression of proteins in
200 PIWI-interacting RNAs (piRNAs) are small non-coding RNAs essential for animal germ cell developme
205 quencing studies have identified hundreds of non-coding RNAs in bacteria, including regulatory small
207 genes and 991 differentially expressed small non-coding RNAs in cortical tubers compared to autopsy c
208 r abundance, the molecular functions of long non-coding RNAs in mammalian nervous systems remain poor
210 samples reveled thousands of uncharacterized non-coding RNAs including long non-coding RNA (lncRNA).
213 snoRNAs and provided the first evidence that non-coding RNAs may play an important role in regulating
221 ed a large set of tissue-specific coding and non-coding RNAs that are bound to active promoters and e
223 cting RNAs (piRNAs) are a new class of small non-coding RNAs that are known to be associated with RNA
224 Circular RNAs (circRNAs) are a class of non-coding RNAs that are widely expressed in various cel
225 re 26-30-nucleotide germ line-specific small non-coding RNAs that have evolutionarily conserved funct
226 internal RNA modification in both coding and non-coding RNAs that is catalysed by the METTL3-METTL14
228 also reveals a regulatory mechanism by long non-coding RNAs to control energy metabolism and tumor d
229 ed fragments) are an abundant class of small non-coding RNAs whose biological roles are not well unde
231 00 protein coding genes (PCGs) and 100 long non-coding RNAs with domestication-associated haplotypes
234 g genes, 508 novel transcribed regions, 5178 non-coding RNAs, and 35 846 small RNA loci that were for
235 mulating articles are presented: one on long non-coding RNAs, another on the ligand-activated transcr
236 es are bound by a large number of coding and non-coding RNAs, but approaches to comprehensively map t
240 sRNA interactions were also identified with non-coding RNAs, including sRNAs and tRNAs, demonstratin
242 ion of 110 RNA-binding proteins and 137 long non-coding RNAs, most of them previously not linked to s
243 References 1013 MicroRNAs (miRNAs) are small non-coding RNAs, of typically 20-24 nt, that regulate ge
245 hat include fusion proteins, novel exons and non-coding RNAs, one-third of which showed allelically i
246 located in the nucleus, is to polyadenylate non-coding RNAs, which undergo trans-splicing and polyad
258 ry of: (i) new leads for gene function, (ii) non-coding RNAs; (iii) genes, pathways and ncRNAs that a
262 ein-coding gene and tRNA overlap with little non-coding sequence in the compact P. rubra genome.
263 ck of ALAS2 expression, indicating that this non-coding sequence is indispensable for ALAS2 expressio
265 did identify the disruption of exon-proximal non-coding sequences (e.g., the promoter) as functionall
266 ylvae and I. pulchra genomes have many long non-coding sequences between genes, likely driving genom
269 s affected by recurrent mutations disrupting non-coding sequences was similar to that affected by rec
270 ers using the combined effects of coding and non-coding single nucleotide variants, structural varian
271 vior of living cells to be reprogrammed, and non-coding small RNAs (sRNAs) are increasingly being use
272 ogether, these results indicate a functional non-coding SNP in EPHA2 promoter affects PAX2 binding an
273 the interpretation of personal genomes.While non-coding synonymous and intronic variants are often no
274 us, the ASCC3 gene expresses both coding and non-coding transcript isoforms with opposite effects on
275 lopmental progression and tumor suppression, non-coding transcription orchestrates chromatin folding
278 iated haploblocks express novel multi-exonic non-coding transcripts that are tissue-specific and enri
279 pha satellite array produces a unique set of non-coding transcripts, and RNAs present at active centr
280 edicted the potential regulatory function of non-coding transcripts, revealed enriched motifs of tran
281 fy the biologic mechanism by which a common, non-coding variant can distally regulate a gene and cont
282 are key to dissecting the allelic effects of non-coding variants and their contribution to phenotypic
283 L) methods for predicting disease-associated non-coding variants are faced with a chicken and egg pro
284 Ls in the Hutterites suggest that these rare non-coding variants are likely to mediate their effects
285 in two different contexts: the prediction of non-coding variants associated with Mendelian and with c
286 al regulatory functions for 423 of 565 (75%) non-coding variants associated with platelet traits and
288 ent methods ineffectively capture pathogenic non-coding variants in genic regions, resulting in overl
289 P outperforms leading methods in identifying non-coding variants that are pathogenic and is therefore
291 contributes to the prediction of functional non-coding variants, including expression quantitative t
299 ntifies functional enhancers and reveals how non-coding variation associated with human immune dysfun
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