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1 ences, 5-9% of alignments at iteration 5 are non-homologous.
2 ediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-t
3 ocol can be successfully applied to pairs of non-homologous but functionally linked proteins to find
4 nks were observed involving the beta subunit non-homologous C-terminal tail, several cross-links were
5 ulatory GTPases, but is atypical in having a non-homologous, C-terminal domain of approximately 20 kD
6 se as mice, wheat and yeast, indicating that non-homologous centromere pairing in early meiosis and a
8 ly to inhibit sustained interactions between non-homologous chromatids, and that these ectopic intera
9 to those observed in Cdk2 KO mice including non-homologous chromosome pairing, unrepaired double-str
11 d chromatin bridges between the telomeres of non-homologous chromosomes in Atrecq4A at metaphase I, i
12 be compared with parameter distributions for non-homologous datasets of different classes of protein
14 deletion of genomic sequence or insertion of non-homologous DNA at the edited locus in a cell line sp
15 coni protein D2, ATM protein expression, and non-homologous DNA end joining protein expression and fu
19 ing site-specific nuclease digestion through non-homologous DNA end-joining, as opposed to single str
21 n the neighboring sequence region contains a non-homologous domain, PSI-BLAST can incorporate the unr
22 ndant proteins and test it on a large set of non-homologous domains, as well as on the set of protein
23 ing partners promotes the rapid unbinding of non-homologous dsDNA and drives strand exchange forward
25 ce that selection for RPS5 involves multiple non-homologous effectors and multiple pathogen species.
30 mpared to HR, whereas Ku-dependent classical non-homologous end joining (C-NHEJ) has a minimal role t
32 ngly none of the components of the canonical non-homologous end joining (C-NHEJ) pathway were identif
34 pair is usually facilitated by the classical non-homologous end joining (C-NHEJ), or homologous recom
36 ndependent function for LRF in the classical non-homologous end joining (cNHEJ) pathway of double-str
39 promotes the two major DSB repair pathways, non-homologous end joining (NHEJ) and homologous recombi
41 ebrafish (Danio rerio) and livestock through non-homologous end joining (NHEJ) and homology-directed
42 trand break repair that buttresses canonical non-homologous end joining (NHEJ) and is manifest in NHE
46 ohomology-mediated end joining (MMEJ), while non-homologous end joining (NHEJ) has not been reported.
57 m the RAG post-cleavage complex (PCC) to the non-homologous end joining (NHEJ) machinery to promote a
59 capabilities; however, the preponderance of non-homologous end joining (NHEJ) mediated repair events
60 The available evidence indicates a role for non-homologous end joining (NHEJ) of DNA double-strand b
62 regulated process performed predominantly by non-homologous end joining (NHEJ) or homologous recombin
63 and breaks (DSBs) are repaired by either the non-homologous end joining (NHEJ) or homologous recombin
64 uble strand breaks (DSBs) can be repaired by non-homologous end joining (NHEJ) or homology-directed r
65 implicates breaks followed by repair through non-homologous end joining (NHEJ) or stalled fork repair
66 se IIIalpha is a component of an alternative non-homologous end joining (NHEJ) pathway for DNA double
72 B-mediated homologous recombination (HR) and non-homologous end joining (NHEJ) repair systems, leadin
73 ught to arise from a moderate attenuation of non-homologous end joining (NHEJ) repair, the role of DE
75 knockout MEFs exhibited distinct defects in non-homologous end joining (NHEJ) when compared to their
77 nit (DNA-PKcs) plays a key role in mediating non-homologous end joining (NHEJ), a major repair pathwa
78 Non-allelic homologous recombination (NAHR), non-homologous end joining (NHEJ), and microhomology-med
79 otes, DNA DSBs are predominantly repaired by non-homologous end joining (NHEJ), but DNA ends can also
80 for sequence-specific gene knockout through non-homologous end joining (NHEJ), but it remains ineffi
81 ir factors, in particular those required for non-homologous end joining (NHEJ), do not form discrete
82 non-allelic homologous recombination (NAHR), non-homologous end joining (NHEJ), fork stalling and tem
83 hen can become the substrate for error-prone non-homologous end joining (NHEJ), generating mutations
84 xcision repair (NER), mismatch repair (MMR), non-homologous end joining (NHEJ), homologous recombinat
86 common DSB repair mechanism in human cells, non-homologous end joining (NHEJ), rejoins broken DNA en
88 air by homologous recombination (HR) but not non-homologous end joining (NHEJ), using HeLa cell lines
89 s of either homologous recombination (HR) or non-homologous end joining (NHEJ), whereas SUMO2/3 was r
108 t provides DNA ligase activity for classical non-homologous end joining (the predominant DNA double-s
109 that errors in DNA repair pathways, such as non-homologous end joining and homologous recombination,
111 e other five types of solid tumors, in which non-homologous end joining and microhomology end joining
112 ted stochastic model of DNA damage repair by non-homologous end joining and of gamma irradiation-indu
113 otein and combined deficiencies in classical non-homologous end joining and p53 predispose to RAG-ini
114 e found that MMSET is required for efficient non-homologous end joining as well as homologous recombi
116 RNF168 rescues 53BP1 recruitment involved in non-homologous end joining but not BRCA1 recruitment for
117 the interference of high LET radiation with non-homologous end joining but not homologous recombinat
118 roach to reduce the toxicity associated with non-homologous end joining by promoting the use of homol
119 de DNA end binding proteins required for the non-homologous end joining DNA repair pathway, increases
121 We found Cas9-gRNA achieved 7-8x higher non-homologous end joining efficiencies (3%) than reTALE
123 t acetylation of H4 regulates binding of the non-homologous end joining factor 53BP1, which engages c
124 G2 shepherd the broken DNA ends to classical non-homologous end joining for proper repair, roles for
125 ting functional redundancy between Rad18 and non-homologous end joining for tolerance of oxidative DN
127 Repair of DNA double-strand breaks (DSBs) by non-homologous end joining is critical for neural develo
130 repair (HR), while counteracting error-prone non-homologous end joining of DNA double-strand breaks.
131 poration, and it efficiently participates in non-homologous end joining of double-strand DNA breaks.
133 ther demonstrate that the excursions promote non-homologous end joining of dysfunctional telomeres an
134 derived hiPSCs where successful deletion and non-homologous end joining of up to 725 kb reframed the
135 SceI-induced break can be repaired either by non-homologous end joining or by recombination between t
136 A double-strand breaks can be eliminated via non-homologous end joining or homologous recombination.
137 s in a G1-like DNA repair mode which favours non-homologous end joining over interchromosomal recombi
138 double-strand DNA break (DSB) repair via the non-homologous end joining pathway, as unrepaired DSBs a
143 h recombination use overlapping but distinct non-homologous end joining pathways to repair DNA double
144 r shown to have homologous recombination and non-homologous end joining related activities and also t
145 led to enhanced phosphorylation of DNA-PK, a non-homologous end joining repair protein, in Hec-108 ce
146 removal of histone H3 from the genome during non-homologous end joining was promoted by both ATM and
147 EGFR mutation is associated with a defect in non-homologous end joining, a major pathway for DNA doub
148 ecombination, an error-free mechanism, or by non-homologous end joining, a process susceptible to int
149 ctionally contribute to efficient resection, non-homologous end joining, and tolerance to DNA-damagin
150 lta defects in Tel1/ATM kinase signaling and non-homologous end joining, consistent with the role of
151 ile another chromosome break repair pathway, non-homologous end joining, does not affect chromosome s
152 the processing of dysfunctional telomeres by non-homologous end joining, putatively through stabiliza
153 at take part in homologous recombination and non-homologous end joining, respectively, were transcrip
155 damage-tolerance in G(1) (because of back-up non-homologous end joining-mediated DSB repair), yet Rad
156 e heterodimer Ku70/Ku80, has a major role in non-homologous end joining-the main pathway in mammals u
165 dent on Ku70/80 and LIG4, or the alternative non-homologous end-joining (A-NHEJ), which relies on PAR
167 elomere fusions require either the classical non-homologous end-joining (C-NHEJ) pathway dependent on
169 ng mechanisms, the main process is classical non-homologous end-joining (C-NHEJ) which relies on Ku b
170 or critical role in ICL repair was seen for non-homologous end-joining (cku-80) or base excision rep
171 CC4-like factor (XLF) functions in classical non-homologous end-joining (cNHEJ) but is dispensable fo
174 s) are repaired by two principal mechanisms: non-homologous end-joining (NHEJ) and homologous recombi
175 e repair of DNA double-strand breaks (DSBs): non-homologous end-joining (NHEJ) and homologous recombi
176 ase II (TOP2) are rejoined by TDP2-dependent non-homologous end-joining (NHEJ) but whether this promo
178 tional error-prone pathway of DSB repair via non-homologous end-joining (NHEJ) catalysed by Ku and DN
179 to be associated with the components of the non-homologous end-joining (NHEJ) complex and participat
180 rate that combined inactivation of the XRCC4 non-homologous end-joining (NHEJ) DNA repair gene and p5
181 Allele-specific gene disruption induced by non-homologous end-joining (NHEJ) DNA repair offers a po
184 chanisms for DSB repair; in mammalian cells, non-homologous end-joining (NHEJ) is a major DSB repair
187 ge response pathways, and promotes efficient non-homologous end-joining (NHEJ) of dysfunctional telom
188 DSBs are repaired by either error prone non-homologous end-joining (NHEJ) or error-free homologo
189 the X family that has been implicated in the non-homologous end-joining (NHEJ) pathway during repair
190 y (CHO) cell lines that are defective in the non-homologous end-joining (NHEJ) pathway of DNA double-
193 depleting HP1 from cells did not affect the non-homologous end-joining (NHEJ) pathway: instead it el
194 ed via the single-strand annealing (SSA) and non-homologous end-joining (NHEJ) pathways in a manner d
195 osomes and generate genome rearrangements by non-homologous end-joining (NHEJ) processes in specializ
196 dation of a novel assay to measure mutagenic non-homologous end-joining (NHEJ) repair in living cells
199 homology directed repair (HDR) and decreased non-homologous end-joining (NHEJ) repair, suggesting tha
200 efficiency, which are typically repaired by non-homologous end-joining (NHEJ) resulting in nonspecif
201 a DNA nuclease that plays important roles in non-homologous end-joining (NHEJ), a major double-strand
204 n (HR) repair with a concomitant decrease in non-homologous end-joining (NHEJ), accounting for the im
206 syl-DNA phosphodiesterase 2 (TDP2)-dependent non-homologous end-joining (NHEJ), but whether this proc
207 DNA-PKcs; encoded by PRKDC) functions in DNA non-homologous end-joining (NHEJ), the major DNA double
208 Since mammalian cells can repair DSBs by non-homologous end-joining (NHEJ), we hypothesized that
210 ever, mutagenic events caused by error-prone non-homologous end-joining (NHEJ)-mediated repair are in
216 )p53(-/-) MEFs, homologous recombination and non-homologous end-joining activities were significantly
218 timated frequencies of accurate or mutagenic non-homologous end-joining and gene correction by homolo
219 ks between the target sequences, stimulating non-homologous end-joining and homologous recombination.
220 mulation at DNA breaks is enhanced by active non-homologous end-joining but does not require DNA-PKcs
221 estigate the interplay between Ku, a central non-homologous end-joining component, and the Mre11-Rad5
222 protein NONO was found to be involved in the non-homologous end-joining DNA repair process and in pol
223 ns indicate that these have been mediated by non-homologous end-joining DNA repair, although varying
224 sh that REV7 blocks DSB resection to promote non-homologous end-joining during immunoglobulin class s
228 (DNA-PK), a crucial player in DNA repair by non-homologous end-joining in higher eukaryotes, consist
230 demonstrate the importance of TDP2-dependent non-homologous end-joining in protecting both gene trans
231 bioluminescence imaging, that the assay for non-homologous end-joining is sensitive, quantitative, r
232 SWI/SNF and RSC enzymes is inhibited by the non-homologous end-joining machinery, and that their rec
234 tid means that repair of DSBs occurs through non-homologous end-joining or microhomology-mediated end
235 s expressing BCR-ABL1 utilize an alternative non-homologous end-joining pathway (ALT NHEJ) to repair
236 leotides during gap-filling synthesis in the non-homologous end-joining pathway of double-strand brea
238 ch as those encountered by pol lambda in the non-homologous end-joining pathway, may have been solved
239 in the proximity of the break were due to a non-homologous end-joining pathway, while larger deletio
242 This overexpression triggers SSB repair and non-homologous end-joining pathways to increase DNA repa
245 a novel component regulating the switch from non-homologous end-joining to homologous recombination.
246 double-strand break repair switches from DNA non-homologous end-joining to homologous recombination.
247 in the repair of DNA double-strand breaks by non-homologous end-joining, and by the discovery of a un
248 breakpoint junctions revealed signatures of non-homologous end-joining, non-allelic homologous recom
249 involved defective base excision repair and non-homologous end-joining, pathways required for repair
255 hat is distinct from that found in classical non-homologous-end-joining-, H2ax-, Mdc1- and Atm-defici
256 nferred when structurally distinct and hence non-homologous enzymes show the ability to catalyze the
257 f chromosomal DNA or insertion of 18 bp, and non-homologous flanking sequences were also processed.
258 from head-to-head and head-to-tail oriented "non-homologous" FRT partners are a 4-noded knot and a 5-
259 vC syndrome) led us to study the role of two non-homologous genes, EVC and LBN, in heart development
260 the other hand, N-glycan structures found on non-homologous glycoproteins do not show significant glo
263 ) N-linked glycan library and PDB homologous/non-homologous N-glycoprotein sets indicate that GS-alig
264 In contrast, breakpoints associated with non-homologous (NH) mechanisms often have sequence micro
265 nation defects and frequently associate with non-homologous partners, instead of pairing with their p
266 n different organs, formed from sequentially non-homologous polypeptide chains and affecting human or
267 large scale, DSB formation is suppressed on non-homologous portions of the sex chromosomes via the D
268 to double-stranded DNA, and a suppression of non-homologous primer annealing and nonspecific amplific
269 reconstructions of TCPM mutants in which the non-homologous proteins are individually deleted, we pro
271 ket database to predict binding ligand of 75 non-homologous proteins that bind one of seven different
272 othelial cell loss of KRIT1, CCM2 or PDCD10, non-homologous proteins that form an adaptor complex.
273 possible to discriminate within a dataset of non-homologous proteins those that bind similar ligands
274 on specific scoring matrix, which then finds non-homologous proteins with significant expectation val
276 separating training and test mutations from non-homologous proteins, which reflects inherent correla
279 sis and robustness tests, we create a set of non-homologous, purely synthetic, minimal promoters for
280 ydrolase family GH30) and then applied it to non-homologous (putative) retaining beta-glucosidases ca
281 dsDNA molecule allows dsDNA to extend along non-homologous Rad51-ssDNA filaments and remain stably b
282 by driving the swift unbinding of dsDNA from non-homologous Rad51-ssDNA filaments, while at the same
283 e normally unstable binding of that dsDNA to non-homologous RecA-ssDNA filaments, whereas pulling on
284 efficiency of both homologous and the other non-homologous recombination, as well as increases sensi
285 AST makes two types of errors: alignments to non-homologous regions and HOE alignments that begin in
286 d mechanism involving template switching and non-homologous repair mediates the formation of balanced
287 ts a shift in emphasis for new entries, from non-homologous representatives covering EC reaction spac
289 o the point of giving complete alignments of non-homologous sequences, Stemloc-AMA aligns only sequen
293 all-to-all gapless structural match on 6684 non-homologous single-domain proteins in the PDB and fou
295 the second end must be processed to remove a non-homologous tail before completing repair by gene con
296 tes on both strands, demonstrating that this non-homologous tail remains flexible and forms heterogen
298 oupling a microhomology search to removal of non-homologous tails and microhomology-primed synthesis
299 the structures of serine hydrolases that are non-homologous to FAAH, such as elastase, trypsin, or ch
300 cular dynamics simulations performed on nine non-homologous viral protein structures and from variati
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