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4 e that a single-nucleotide polymorphism, the non-synonymous alpha5 variant rs16969968, frequent in ma
5 were identified; these mutations resulted in non-synonymous amino acid changes or affected splicing s
6 KT/protein kinase B molecules), leading to a non-synonymous amino acid substitution in the highly con
11 us substitutions between species compared to non-synonymous and synonymous polymorphisms within speci
12 s and overlapping codes are delineated along non-synonymous and synonymous positions in protein codin
13 s by calculating the nucleotide diversity at non-synonymous and synonymous sites in the coding region
14 selection based on the relative frequency of non-synonymous and synonymous substitutions between spec
15 us rate ratio but to an increase in both the non-synonymous as well as the synonymous substitution ra
16 BI's) Exome Sequencing Project revealed that non-synonymous ASB10 mutations are present in the genera
18 and whole-exome sequencing, we identified a non-synonymous c.2263G>C (p.G755R) mutation at the PLB1
19 umour models that a considerable fraction of non-synonymous cancer mutations is immunogenic and that,
20 ied de novo mutations show a large excess of non-synonymous changes in schizophrenia cases, as well a
21 is defined by multiple mutations, including non-synonymous changes in the virion protein 35 (VP35),
22 40 HIVAN or FSGS cases and controls revealed non-synonymous changes that could account for the diseas
33 orphism analyses and to prioritize candidate non-synonymous coding SNPs (nsSNPs) that should be teste
35 s we also identified the previously reported non-synonymous coding variants (E921D and E993V) which a
37 In a complementary analysis, we identify 26 non-synonymous, coding, single nucleotide polymorphisms
38 However, the frequency of synonymous and non-synonymous codon pair repeats varies in a correlated
39 s computation and analysis of synonymous and non-synonymous codon substitutions for studying evolutio
40 Volatility for a given codon is the ratio of non-synonymous codons to all sense codons accessible by
41 we demonstrate increased differentiation at non-synonymous, compared to synonymous, SNPs, resulting
42 tly correlated with the risk of spontaneous, non-synonymous conversion of methylated cytosines to thy
45 nucleotide polymorphisms (SNPs), including 3 non-synonymous cSNPs, as well as a variable number of ta
46 ns associated with artemisinin resistance--a non-synonymous Cys580Tyr substitution in 70 (65%) of 107
47 uding similar rates of synonymous (d(S)) and non-synonymous (d(N)) nucleotide changes among rare poly
48 s (M30), which is significantly enriched for non-synonymous de novo mutations ascertained from patien
50 tion and a BACE2 intronic deletion) and 3/12 non-synonymous DNVs (in PSEN1, VPS35 and MARK4) targeted
52 the functional impact of the following three non-synonymous DNVs targeting this network: the novel PS
54 ting sites in coding sequence, including two non-synonymous edits in the Cacna1d gene that fell into
56 ociations between incident CHD risk and both non-synonymous EPHX2 polymorphisms and phase-reconstruct
59 R-PSEP is a new software tool for predicting non-synonymous genetic variants that may play a causal r
61 tant to understand as numerous mutations and non-synonymous genetic variation in ZnT2 have been detec
62 tween non-synonymous, benign variability and non-synonymous human-mouse divergence suggests that sele
66 ing effect of rs1143679, a single nucleotide non-synonymous Mac-1 polymorphism associated with SLE.
68 ng variant leading to early truncation and a non-synonymous missense variant) in a pair of siblings a
70 pecific immune response against the virus; a non-synonymous mutation in an epitope region of the viru
72 ing and non-coding regions and synonymous-to-non-synonymous mutation ratios suggest the neutral drift
73 etic variant under selection in Europeans (a non-synonymous mutation, C282Y) has been relatively well
74 number of other single-sample reports of IDH non-synonymous mutation, did not elevate cellular 2HG le
75 ation, we found that potentially deleterious non-synonymous mutations (9566 SNPs) explained as much g
76 ith reduced cAMP production arising from the non-synonymous mutations (n = 23) with patients with non
77 brary of 1.9 x 10(7) with over 8500 possible non-synonymous mutations and inferred the effects of eac
79 ions how conserving, or radically different, non-synonymous mutations are with respect to some key am
82 ntiating between neutral and disease-causing non-synonymous mutations documented in the human populat
84 ly been linked to epithelial malignancy with non-synonymous mutations identified in both MTG8 and MTG
91 approach, we introduce a barcoded library of non-synonymous mutations into hotspot codons 12 and 13 o
93 region may show a relatively large number of non-synonymous mutations that conserve a particular prop
94 nymous mutations (n = 23) with patients with non-synonymous mutations that had no reduction in cAMP (
95 erein we measure the effect of four adaptive non-synonymous mutations to the glycerol kinase (glpK) g
96 apolipoprotein A-V (APOA5), carriers of rare non-synonymous mutations were at 2.2-fold increased risk
97 ipoprotein receptor (LDLR), carriers of rare non-synonymous mutations were at 4.2-fold increased risk
98 or (hIP) variants, we recently discovered 18 non-synonymous mutations, all with frequencies less than
99 human protein and numerous spliced variants, non-synonymous mutations, and post-translational modific
100 databases) of 200 other GPCRs, with recorded non-synonymous mutations, confirmed a high frequency of
101 d over 260 000 somatic alterations including non-synonymous mutations, copy number variants and struc
102 in Southeast Asia there is a great excess of non-synonymous mutations, many of which cause radical am
103 l as two rare potentially disease-associated non-synonymous mutations, Q170H and R181G, in the ADAM10
104 the pattern of differences in synonymous and non-synonymous mutations, under the assumption of neutra
111 coding variants down to 0.05% frequency [57% non-synonymous (NS), 42% synonymous and 1% gain or loss
113 ral selection, as inferred from the ratio of non-synonymous nucleotide divergence (d(N)) to synonymou
115 the R2R3-AtMYB phylogeny experienced excess non-synonymous nucleotide substitution upon gene duplica
116 across the entire coding region, the rate of non-synonymous nucleotide substitutions is approximately
118 increased with age, and many mutations were non-synonymous or resided in RNA coding genes and thus c
119 panzee ancestor to humans shows an excess of non-synonymous over synonymous substitutions, which is a
121 nome-wide studies have strongly associated a non-synonymous polymorphism (rs16969968) that changes th
125 ied potentially important human mAKAP coding non-synonymous polymorphisms located within or near key
130 level of hybridization potential relative to non-synonymous positions, and are multifunctional in the
131 ional SNPs considered, including synonymous, non-synonymous, predicted 'benign', predicted 'possibly
132 ction algorithms and conservation scores, 12 non-synonymous prediction algorithms and four cancer-spe
133 ified two with distinct, heterozygous, rare, non-synonymous PRICKLE2 variants (p.E8Q and p.V153I) tha
134 mutations in type I collagen, including five non-synonymous rare variants of unknown significance, of
137 c rs78707713 and the lead SLC44A2 SNP is the non-synonymous rs2288904 previously shown to associate w
138 e polymorphisms, rs936938 (P=4.49 x 10(-8)), non-synonymous rs6537835 (P=3.26 x 10(-8)) and rs1877455
141 tion (AAS) in a protein sequence is called a non-synonymous single nucleotide polymorphism (nsSNP).
143 lcyon gene from 80 human subjects revealed a non-synonymous single nucleotide polymorphism that abrog
144 gic receptor gene (ADRB2) contains a common, non-synonymous single nucleotide polymorphism, Gly16Arg,
145 mind that currently there are no variations (non-synonymous single nucleotide polymorphism, nsSNP) de
147 initiatives are generating extensive data on non-synonymous single nucleotide polymorphisms (nsSNPs)
153 studies discovered at least eight validated non-synonymous single nucleotide polymorphisms (nsSNPs)
155 le-genome sequencing is identifying numerous non-synonymous single nucleotide polymorphisms (nsSNPs),
158 ant of this receptor (OR7D4 WM) contains two non-synonymous single nucleotide polymorphisms (SNPs), r
159 oll-like receptor signaling, harboring eight non-synonymous single nucleotide polymorphisms in its co
160 encing the AMCase gene exons we identified 8 non-synonymous single nucleotide polymorphisms including
164 step in assessing the disruptive impacts of non-synonymous single nucleotide variants (nsSNVs) on hu
165 rently being sequenced, yielding millions of non-synonymous single nucleotide variants (SNVs) of poss
167 ertained in Bogota, Colombia, we identify 28 non-synonymous single nucleotide variants that are consi
169 th pre-computed predictions of the impact of non-synonymous single nucleotide variants, to facilitate
170 udy, we focus on a comprehensive analysis of non-synonymous single nucleotide variations (nsSNV) that
171 the reference followed by identification of non-synonymous Single Nucleotide Variations (nsSNVs) and
175 d the impact of a comprehensive panel of 109 non-synonymous single-nucleotide polymorphisms (nsSNPs)
177 sed to visualize amino acid substitutions or non-synonymous single-nucleotide polymorphisms in indivi
180 ously found to harbour schizophrenia de novo non-synonymous single-nucleotide variants (SNVs; P=5.4 x
181 comes in form of protein-sequence altering (non-synonymous) single nucleotide variants (nsSNVs).
185 n linkage disequilibrium (LD) with rs7041, a non-synonymous SNP (D432E; P=4.1x10(-22)) and rs1155563
187 ial interest exists in determining whether a non-synonymous SNP (nsSNP), leading to a single residue
190 The peak signal in the 12p12.2 region was a non-synonymous SNP in SLCO1B1 (rs4149056, P = 6.7 x 10(-
191 ling evidence for a risk variant came from a non-synonymous SNP in the alpha5 nicotinic receptor subu
192 y-parallel sequencing, a strongly associated non-synonymous SNP in the CAPN1 gene, encoding the calci
198 on a smaller group of SNPs that includes the non-synonymous SNP rs16969968, which retains a similar e
199 e, but only for a haplotype defined by three non-synonymous SNPs (C157R, M378V and M681T) that are ne
201 aracterization and validation of deleterious non-synonymous SNPs (nsSNPs) in the interleukin-8 gene u
203 ous for the derived allele at synonymous and non-synonymous SNPs and for the damaging allele at 'prob
204 a on pathogenic missense mutations, on human non-synonymous SNPs and on human-chimpanzee divergence o
206 find that approximately one quarter of known non-synonymous SNPs are deleterious by these criteria, p
207 Interestingly, we found that these three non-synonymous SNPs have high posterior probabilities fo
209 e population or the other, the proportion of non-synonymous SNPs is significantly higher in the EA sa
210 r colorectal cancer (CRC), we genotyped 1467 non-synonymous SNPs mapping to 871 candidate cancer gene
211 Schizophrenia risk-associated polymorphisms [non-synonymous SNPs rs821616 (Cys704Ser) and rs6675281 (
212 We identified conserved, ecotype-restricted, non-synonymous SNPs that are predicted to affect the pro
213 er hand, only a small percentage of SNPs are non-synonymous SNPs while many SNPs are actually located
216 nucleotide polymorphisms (SNPs) but not for non-synonymous SNPs, further indicating that the observe
219 atures include automated selection of coding non-synonymous SNPs, SNP filtering based on inter-SNP di
220 tative trait loci data and correlations with non-synonymous SNPs, we identified many candidate genes
223 impacted by autism de novo SNVs (P=0.019 for non-synonymous SNV genes) did not survive Bonferroni cor
227 el (G12D), MNU tumours had an average of 192 non-synonymous, somatic single-nucleotide variants, comp
228 t a genome-wide level, our results implicate non-synonymous, splice site as well as stop-altering sin
230 Further genotyping indicated that a single non-synonymous substitution (A120G) in the N-terminal re
231 nd humans) and found that the synonymous and non-synonymous substitution (dN/dS) ratios in all pairs
233 etrotransposons, the rates of synonymous and non-synonymous substitution among triplicated genes reta
234 lotypes differed from FFAR3 by only a single non-synonymous substitution and that the GPR42 reference
235 Furthermore, the rate of charge-altering non-synonymous substitution is approximately 1.8 times t
236 provide evidence for a significantly higher non-synonymous substitution rate than synonymous rate in
237 duplicated HoxA genes studied have a higher non-synonymous substitution rate than the corresponding
238 e provided evidence that marked increases of non-synonymous substitution rates occurred in anthropoid
239 nt biological scales for both synonymous and non-synonymous substitution rates, which is only compati
241 s a negative correlation between the rate of non-synonymous substitutions (d(N)) and codon usage bias
243 on-Hox nuclear gene RAG1 only an increase in non-synonymous substitutions could be detected, suggesti
244 ng selection, plausibly because advantageous non-synonymous substitutions have not yet accumulated.
247 , and relative frequencies of synonymous and non-synonymous substitutions may not be useful to resolv
248 s associated with high frequencies of excess non-synonymous substitutions may play critical roles in
250 Our results reveal a remarkable excess of non-synonymous substitutions, an indication of adaptive
251 dons where rat-mouse divergence involved two non-synonymous substitutions, both of them occurred in t
252 equences showed the highest relative rate of non-synonymous substitutions, with dN/dS>14 in some pair
255 of 2,163 effects were detected, 282 effects (non-synonymous, synonymous or stop codon gained) were lo
258 d normal tissues of each patient, we found 7 non-synonymous tissue specific editing events including
259 potentials of genomic regions based on their non-synonymous to synonymous divergence rates, has been
260 ed proteins are encoded by genes that have a non-synonymous to synonymous mutation rate even greater
261 ach is to identify sites with high ratios of non-synonymous to synonymous mutations; however, if syno
263 equence analysis showed a very high ratio of non-synonymous to synonymous nucleotide substitutions (K
265 the prediction method based on the ratio of non-synonymous to synonymous substitution rates (dN/dS)
267 are based on whether each site/region has a non-synonymous to synonymous substitution rates ratio om
271 es under selection by estimating the rate of non-synonymous to synonymous substitutions with multiple
272 rn of selection, estimated from the ratio of non-synonymous to synonymous substitutions, varied consi
274 e of evolution is not due solely to a higher non-synonymous-to-synonymous rate ratio but to an increa
275 loci, and one new independent low-frequency non-synonymous variant in an established heart rate locu
276 e allele shared among them was rs78247304, a non-synonymous variant of KCNH7 (c.1181G>A, p.Arg394His)
279 tect suggestive association of a common FBN2 non-synonymous variant, rs154001 (p.Val965Ile) with AMD
280 the strongest enrichment for causality among non-synonymous variants (54x more likely to be causal, 1
281 tools have been developed to predict whether non-synonymous variants are neutral or disease-causing.
282 er sample sizes and appropriate weighting of non-synonymous variants by predicted functional impact.
285 Lead variants in four of the novel loci are non-synonymous variants in the genes C10orf71, DALDR3, T
287 Seq annotated several thousand more reliable non-synonymous variants than other widely used tools (e.
288 an interim measure, exome arrays allow rare non-synonymous variants to be sampled at a fraction of t
293 phenotypic variation has expanded beyond the non-synonymous variants which alter the amino acid seque
298 a prediction method that measures paucity of non-synonymous variation in the human population to infe
299 ate that one of the haplotypes, carrying the non-synonymous variation known to code for a less stable
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