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1 t degradation, which is extended by the EXO1 nuclease.
2 at has rarely been observed with any type of nuclease.
3 y, cell type and duration of exposure to the nuclease.
4 forks, including being processed by the Exo1 nuclease.
5 dsDNA degradation by a trans-acting helicase-nuclease.
6 e essential function and is resistant to the nuclease.
7 pe I-E CRISPR-Cas (Cascade) complex and Cas3 nuclease.
8 ethylsulphate, potassium permanganate and S1 nuclease.
9 ucleic acids using CRISPR RNA (crRNA)-guided nucleases.
10 t concentrations and degradation mediated by nucleases.
11 have invigorated the field of site-specific nucleases.
12 e required for catalysis in analogy to other nucleases.
13 crRNA-guided DNA cleavage by the Cpf1 family nucleases.
14 al sequence that are completely resistant to nucleases.
15 n with transcription activator-like effector nucleases.
16 0-fold protection against digestion by serum nucleases.
17 ngs to the Rad2 family of structure-specific nucleases.
18 ys that protect the ends of some ncRNAs from nucleases.
19 BLM) helicases, or the GEN-1 or MRT-1 (SNM1) nucleases.
22 ciated score that quantifies tissue-specific nuclease accessibility significantly improves prediction
23 lizes to the break, protecting DNA ends from nuclease accessibility, and recruits additional NHEJ fac
24 in understanding the role and regulation of nucleases acting at stalled forks with a focus on the nu
25 ntitative description of protein binding and nuclease activation at off-target DNA sequences remains
28 However, the R2H2.CglI complex has only one nuclease active site sufficient to cut one DNA strand su
31 ic and coordinated actions of MRE11 and CtIP nuclease activities are required to limit the stable loa
32 ed, suggesting roles for both Mre11 and Sae2 nuclease activities in promoting the processing of DNA e
34 dard tumor suppressor and instead imply that nuclease activities of MRE11 are required for oncogenesi
41 e show that the Cas1 subunits repress Cas2/3 nuclease activity and that foreign DNA recognition by th
42 assays, we find that stimulation of Artemis nuclease activity by X4-LIV and the efficiency of blunt-
45 ow that 5'-exonuclease is the most prevalent nuclease activity in endo-lysosomal compartments and tha
47 ues, which are sufficient to direct specific nuclease activity in vitro and in vivo with reduced off-
52 ative resection initiation pathway where the nuclease activity of MRN apparently directly cleaves the
53 Tetramer assembly activates the cos-cleavage nuclease activity of the enzyme, which matures the genom
55 er the growth defect was a result of loss of nuclease activity or another function of UL12, we introd
56 tion-of-function mutants that lack intrinsic nuclease activity or the ability to promote Mre11 endonu
57 al intracellular environment for caspase and nuclease activity, key components of programmed cell dea
58 morphological effect of the 3D track on the nuclease activity, which suggested that the performance
69 ss of the effector, the fitness costs of the nuclease and effector, and the completeness of parasite
71 talytic core of MRN/X comprised of the Mre11 nuclease and Rad50 adenosine triphosphatase (ATPase) act
72 ecome 'swapped out' in the dimer, increasing nuclease and ribose binding activities by 100-fold and 1
74 es of pathways involving structure-selective nucleases and alternative complexes, which can act upon
75 plicable methods for delivering programmable nucleases and donor templates for homology-directed repa
76 Transcription factors, various polymerases, nucleases and histones recognize and bind DNA with diffe
77 combined efficient expression of engineered nucleases and integration-defective lentiviral vector (I
78 oes not share sequence similarity with these nucleases and lacks the characteristic disulfide bonds o
80 Furthermore, replicons carrying CRISPR/Cas9 nucleases and repair templates achieved GT at an endogen
81 we demonstrate the use of multiple designer nucleases and variant-aware library design to interrogat
82 A aptamers are susceptible to degradation by nucleases, and for this reason, RNA-based sensors are sc
83 1/BRCA1), the MUS-81, EXO-1, SLX-1 and FAN-1 nucleases, and the DOG-1 (FANCJ) helicase in ICL resolut
84 have been pursued to increase resistance to nucleases, and while it seems likely that these and othe
87 or cellular V(D)J recombination and in vitro nuclease assays with C-terminally truncated ARTEMIS show
89 The RNA-guided Cpf1 (also known as Cas12a) nuclease associates with a CRISPR RNA (crRNA) and cleave
90 dden Markov Models for the identification of nuclease bacteriocins (NBs) in bacteria of which, to-dat
91 elopment within the vector, and then use the nuclease-based homing reaction as a form of gene drive t
92 get genome modification, than a current Cas9 nuclease-based method, and can install disease-correctin
94 repeat (CRISPR)/CRISPR-associated protein 9 nuclease (Cas9) system depends on a guide RNA (gRNA) to
95 dromic repeats (CRISPR)-associated protein-9 nuclease (Cas9), a method called acoustic-transfection.
97 logy-directed repair (HDR) coupled with Cas9 nuclease cleavage has been used with great success to re
100 emonstrate a significant association between nuclease colicins, NBs specific for Escherichia coli, an
102 re the bacterial orthologs of Mre11-Rad50, a nuclease complex essential for genome stability, normal
103 pendent formation and activation of this tri-nuclease complex provides a unique mechanism by which ce
105 at prometaphase by formation of the SMX tri-nuclease containing three DNA repair structure-selective
106 palindromic repeats and the Cas9 RNA-guided nuclease (CRISPR/Cas9) system provides a new opportunity
108 ibe Cleavage Under Targets and Release Using Nuclease (CUT&RUN), a chromatin profiling strategy in wh
113 ng the known custom DNA-binding modules, the nuclease-dead Streptococcus pyogenes Cas9 (dCas9) protei
115 s-splicing to ligate synthetic elements to a nuclease-deficient Cas9 (dCas9) in vitro and subsequentl
119 lecules sheltered in the spiky layer against nuclease degradation, exhibiting no significant transfec
121 epair via homology-based mechanisms involves nuclease-dependent DNA end resection, which generates lo
122 IP is absolutely required for activating the nuclease-dependent mechanism of Mre11 but not the nuclea
123 ; 3) preparation of chromatin by micrococcal nuclease digest; 4) ChIP for open chromatin-associated h
124 c polymers that are both highly resistant to nuclease digestion and capable of cross-pairing with DNA
125 to demonstrate that dsRNA is protected from nuclease digestion by virus-induced membrane invaginatio
127 h a backbone structure that is refractory to nuclease digestion, makes TNA an attractive biopolymer s
128 r extract system, here we show that the Dna2 nuclease directly initiates the resection of clean DSBs
129 n NHEJ, followed by the iterative binding of nucleases, DNA polymerases, and the XRCC4-DNA ligase IV
130 n this study, we replaced this domain with a nuclease domain from Salmonella enterica subsp. arizonae
132 wn about the catalytic state of the Cas9 HNH nuclease domain, and identifying how the divalent metal
133 translocation conformationally restrict the nuclease domain, inhibiting cleavage; TerL release from
134 We report the structure of the P74-26 TerL nuclease domain, which allows us to model DNA binding in
141 e, we show that endonuclease G, an apoptotic nuclease downstream of Caspase-3, is directly responsibl
142 S-NaME) employs a double-strand-specific DNA nuclease (DSN) to remove excess DNA with normal methylat
143 presence of an enzyme called duplex specific nuclease (DSN), however, a fraction of the surface-bound
145 ase is more active than the three individual nucleases, efficiently cleaving replication forks and re
147 m T-DNA, biolistics or by stably integrating nuclease-encoding cassettes and repair templates into th
149 repair; the enzyme belongs to a nonspecific nuclease family that includes the apoptotic endonuclease
153 X, SLX4 co-ordinates the SLX1 and MUS81-EME1 nucleases for Holliday junction resolution, in a reactio
155 eloped by measuring the activity of secreted nuclease from the bacteria via a modified DNA oligonucle
156 Crystal structures of the large terminase nuclease from the thermophilic bacteriophage G20c show t
157 sertion or replacement, we screened the Cpf1 nucleases from Francisella novicida and Lachnospiraceae
158 xonuclease activity and shares homology with nucleases from other members of the Herpesviridae family
159 novicida possesses novel properties, but its nuclease function is frequently inhibited at many genomi
160 find that the ability of Sae2 to promote MRX nuclease functions is important for DNA damage survival,
161 d drug-inducible catalytically inactive Cpf1 nuclease fused to transcriptional activation domains to
162 (CRISPR)-CRISPR-Associated Protein 9 (Cas9) nuclease gene editing is potentially an important tool f
163 ng the transcription activator-like effector nuclease gene editing technology, we have knocked out bo
164 HspB1-null cells, generated by CRISPR/Cas9 nuclease genome editing, display an abrogated stretch-st
170 ion process, by crRNA-displaying Cascade and nuclease-helicase fusion enzyme Cas3, respectively.
172 element of the KRAS gene contains a GC-rich nuclease hypersensitive site with three potential DNA se
173 ses to cold tend to contain more micrococcal nuclease hypersensitive sites in their promoters, a prox
175 le, the human KRAS proto-oncogene contains a nuclease-hypersensitive element located upstream of the
178 ency of insertions and deletions elicited by nucleases in cells, tissues or embryos through analysis
181 e for cytoplasmic translocation of RNase III nucleases in response to virus in diverse eukaryotes inc
182 c disruption of the HIV-1 coreceptor CCR5 by nucleases in T cells is under 2 clinical trials and lead
185 must catch up with the preceding processing nucleases, in order to close the single-stranded gap and
187 sferase Dnmt3a-Dnmt3L construct fused to the nuclease-inactivated dCas9 programmable targeting domain
191 8%, is higher than most other genome editing nucleases, indicative of its effective enzymatic chemist
192 of genome function, but can be confounded by nuclease-induced toxicity at both on- and off-target sit
193 ucleases that may pave the way for designing nuclease inhibitors for biochemical and biomedical appli
198 Second, FACS enrichment of cells expressing nucleases linked to fluorescent proteins can be used to
199 trand break (DSB) by a multisubunit helicase-nuclease machine (e.g. RecBCD, AddAB or AdnAB) generates
201 t palindromic repeats (CRISPR) directed Cas9 nuclease-mediated gene editing of CXCR7 revealed that pr
202 ial DNA (mtDNA) damage and after zinc finger nuclease-mediated gene mutation correction, mtDNA damage
203 e RNAs that enable small molecule-controlled nuclease-mediated genome editing and small molecule-cont
204 n induced pluripotent stem cells (iPSCs) and nuclease-mediated genome editing represent a unique oppo
205 n immunoprecipitation (ChIP) and micrococcal nuclease (MNase) digest assays were performed to examine
206 y of nucleosomes, as measured by micrococcal nuclease (MNase) digestion and ATAC-seq (assay for trans
207 We performed a time-course of micrococcal nuclease (MNase) digestion and measured the relative sen
209 view, we compare the traditional micrococcal nuclease (MNase)-based approach with a chemical cleavage
210 temporally optimized delivery of zinc finger nuclease mRNA via electroporation and adeno-associated v
211 target sequence in the genome, and the Cas9 nuclease of the system acts as a pair of scissors to cle
213 strategies involve digesting chromatin with nucleases or chemical cleavage followed by high-throughp
214 Albeit not excluding the agency of a backup nuclease, our findings suggest that mycobacterial HR can
215 APE2 (apurinic/apyrimidinic endonuclease 2) nuclease participates in 3'-5' nucleolytic resection of
217 se 1 (FEN1) and related structure-specific 5'nucleases precisely identify and incise aberrant DNA str
220 NX" DNAs <5 kb were previously isolated from nuclease-protected cytoplasmic particles in rodent neuro
222 ntification of subnucleosomal fragments from nuclease protection data represents a general strategy f
223 in the presence of competing polyanions and nuclease protection in serum relative to conventional br
224 s thus illustrate the potential for unifying nuclease protein delivery with AAV donor vectors for hom
225 These results add to our understanding of nuclease protein targets and potentially serve as starti
227 editing that facilitates the testing of new nuclease reagents and the generation of edited cell pool
228 -targeted controlled cleavage by micrococcal nuclease releases specific protein-DNA complexes into th
230 e (2'-F U) analogues with the aim to improve nuclease resistance and potency of therapeutic siRNAs by
231 ts can optimize properties far beyond simple nuclease resistance and that SFM4-3 should prove valuabl
232 Both 4'-OMe epimers conferred increased nuclease resistance, which can be explained by the close
233 existence of a pseudoknot that stabilizes a nuclease-resistant RNA structure in the 3' untranslated
234 g with transcription activator-like effector nucleases results in a major embryonic hemostatic defect
237 up to 6 h, enabling full sensor function in nuclease-rich environments (undiluted serum) without the
238 ether, our results support roles for non-Cas nuclease(s) during crRNA maturation and establish a link
242 fragments are generated from much longer S1-nuclease sensitive fragments of foreign DNA that require
243 nt methods to deliver both sequence-specific nucleases (SSNs) and repair templates to plant cells.
246 E preferentially co-localized with the MRE11 nuclease subunit of the MRN complex and orchestrates its
248 geted genetic engineering using programmable nucleases such as transcription activator-like effector
251 through Srgap2 knockout via the CRISPR/Cas9 nuclease system and conditional overexpression in the mu
254 paced short palindromic repeats (CRISPR)-Cas nuclease system is a powerful tool for genome editing, a
255 he past few years the development of several nuclease systems has broadened the range of model/cell s
256 sed on transcription activator-like effector nucleases (TALENs) and the clustered regularly interspac
257 uch as transcription activator-like effector nucleases (TALENs) is a valuable tool for precise, site-
258 ystem, transcription activator-like effector nucleases (TALENs) or zinc-finger nucleases (ZFNs).
260 uorophore-labeled PCR amplicons covering the nuclease target site by capillary electrophoresis in a s
262 novel Bace1(-/-) rat line using zinc-finger nuclease technology and compared Bace1(-/-) mice and rat
263 N1) is a multifunctional, structure-specific nuclease that has a critical role in maintaining human g
267 ells to PARPi, indicating redundancy between nucleases that initiate HR can drive PARPi resistance.
268 ucleases (LHEs) are a class of rare-cleaving nucleases that possess several unique attributes for gen
269 ng of polymerases (Pol mu and Pol lambda), a nuclease (the Artemis.DNA-PKcs complex), and a ligase (X
271 ed random mutagenesis of the RNA-guided Cas9 nuclease to look for variants that provide enhanced immu
273 o model an alternative strategy of using the nuclease to target an essential gene, and then linking t
275 systems utilize sequence-specific RNA-guided nucleases to defend against bacteriophage infection.
280 RNA-interference constructs, and CRISPR/Cas9 nucleases) together with randomized, well-replicated exp
285 uses, our results showed that filtration and nuclease treatment did not discernibly increase the sequ
286 A critical issue in ribosome profiling is nuclease treatment of ribosome-mRNA complexes, as it is
288 y (TumiD) as a cellular pathway in which the nuclease TSN promotes the decay of miRNAs that contain C
289 cribed Tudor-staphylococcal/micrococcal-like nuclease (TSN)-mediated miRNA decay (TumiD) as a cellula
290 e herpes simplex virus (HSV) type I alkaline nuclease, UL12, has 5'-to-3' exonuclease activity and sh
291 equency of targeted insertion for these Cpf1 nucleases, up to 8%, is higher than most other genome ed
296 eplication fork stability by inhibiting DNA2 nuclease/WRN helicase-mediated degradation of stalled fo
297 restingly, knockdown of the RNA surveillance nuclease, Xrn1, and members of the CCR4-Not deadenylase
298 inally achieved thanks to these customizable nucleases; yet the rates remain to be further improved.
299 ncluding wild-type CC-125) using zinc-finger nucleases (ZFNs), genetically encoded CRISPR/associated
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