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1 h a reporter fluorophore on the same thymine nucleobase.
2 phere divalent metal ion coordination with a nucleobase.
3 e ionizing transition centered solely on the nucleobase.
4 trolled by the overall hydrophobicity of the nucleobase.
5 ble of differentiating between the G and 8OG nucleobase.
6 ime how SRA reads DNA and flips the modified nucleobase.
7 hanisms that all rely on protonating the 8OG nucleobase.
8 isomers with the desired orientation of the nucleobase.
9 ain of tyrosine 162 that replaces the lesion nucleobase.
10 mimetics in which the peptide backbone bears nucleobases.
11 dispersed binding site with approximately 20 nucleobases.
12 us oxidized, alkylated, or otherwise damaged nucleobases.
13 e through low-lying electronic states of the nucleobases.
14 nsic photostability of canonical DNA and RNA nucleobases.
15 onated peptides and base-pairing energies of nucleobases.
16 electivity for both canonical and epigenetic nucleobases.
17 rohydride reduction, single 5-formylcytosine nucleobases.
18 for their binding to all five human cytosine nucleobases.
19 integrity by locating and excising aberrant nucleobases.
20 l cyanide species (CN.) for the synthesis of nucleobases.
21 lubility of guanine as compared to the other nucleobases.
22 but also an adduct that coordinates multiple nucleobases.
23 ir pathway by locating and excising aberrant nucleobases.
24 en or exocyclic nitrogen and oxygen atoms of nucleobases.
25 MepR makes no hydrogen bonds to major groove nucleobases.
26 LNA: i.e., through functionalization of LNA nucleobases.
27 ace the intermediates back to their original nucleobases.
28 these compounds: canonical and non-canonical nucleobases.
29 se pairing, respectively, over the canonical nucleobases.
30 tion for oxidation was 720 8-oxodG per 10(6) nucleobases.
31 cyclic carbohydrate phosphates with the free nucleobases.
32 It preferred nucleosides compared with nucleobases.
35 odel prebiotic reaction between a pyrimidine nucleobase (2,4,6-triaminopyrimidine, TAP) and ribose, w
36 ining the standard nucleobases and two added nucleobases (2-amino-8H-imidazo[1,2-a][1,3,5]triazin-4-o
38 ith a novel linker able to stack to adjacent nucleobases, a new strategy previously not applied for a
39 ose nucleoside phosphonates with the natural nucleobases adenine, thymine, cytosine, and guanosine ha
41 lly, we observed matching between amino acid-nucleobase affinities and corresponding mRNA sequences i
42 significant matching between an amino acid's nucleobase affinity and corresponding codon content in b
43 ead of directly interacting with the damaged nucleobase, AlkD recognizes aberrant base pairs through
45 ogen bearing acyclic molecules and prebiotic nucleobases along with vitamins found in meteorites.
46 1-DNA interaction, as well as the ability of nucleobase amino acid 1 to stabilize RRM1-DNA interactio
48 ive transcription factor hnRNP LL containing nucleobase amino acids at specific positions have been p
50 lem in chemical selectivity, inasmuch as the nucleobase (an undesired site of reaction) is usually mo
53 ium-sulfate gradient encapsulation method to nucleobase analogues, a liposomal entrapment method once
55 totype contains a cyclopentyl linker between nucleobase and alpha-carboxyphosphonate and preferential
56 nd electronic structure on the nature of the nucleobase and are in good agreement with theoretical ca
57 pi-stacking interactions between the lesion nucleobase and aromatic side chains in the glycosylase a
58 e properties and chemical reactivity of each nucleobase and attempt to provide some general principle
60 is method is irrespective of the 5'-terminal nucleobase and most interestingly can be directly extend
62 n a non-natural N(4) -amino-2'-deoxycytidine nucleobase and the aldehyde residue of an abasic site in
63 fragmented at the N-glycosidic bond provide nucleobase and/or ribose or 2'-deoxyribose fragment ions
65 st time, stacking free energies between five nucleobases and anthracene were determined experimentall
66 acts as guanine when interacting with other nucleobases and base pairs most favorably with cytosine.
67 ef history of the development of fluorescent nucleobases and explore their utility as tools for addre
68 It reacts with exocyclic amino groups of DNA nucleobases and forms adducts/lesions leading to carcino
69 and AlkD are specific for cationic alkylated nucleobases and have a distinctive HEAT-like repeat (HLR
70 activation pathways bestow photostability on nucleobases and hence preserve the structural integrity
72 oside analogs to the corresponding canonical nucleobases and nucleosides upon reconstitution with the
73 ul technique for characterizing noncanonical nucleobases and other chemical modifications in small RN
75 ights into the interactions between HgII and nucleobases and the structural basis for the rational de
76 ter genetic alphabet containing the standard nucleobases and two added nucleobases (2-amino-8H-imidaz
77 t stationary phases, the separations of both nucleobases and weak acids/weak bases on these gradient
78 sition (comparable numbers of A, U, G, and C nucleobases) and of varying length and sequence, and ani
80 e subtle balance between different backbone, nucleobase, and ribose conformations, finely regulated b
82 r substrates for further installation of the nucleobases, and even simple nucleophiles, such as azido
85 d a combination of different leaving groups, nucleobases, and templating sequences to uncover the fac
86 lterations in base pairing properties of the nucleobases, and the mechanisms of ribosomal decoding co
87 d peptides containing push-pull side chains, nucleobases, and their nucleosides and nucleotides, is a
90 interactions between aromatic compounds and nucleobases are crucial in recognition of nucleotides an
93 ase-peptide conjugates (NPCs), where achiral nucleobases are helically displayed on the surface of fi
95 ble via reactions explored previously, while nucleobases are presumed to have been available from hyd
98 d formation between ribose and the canonical nucleobases, as well as the inability of nucleosides to
99 ssed in terms of the ability of the modified nucleobases, as well as their natural counterparts, to s
100 se results suggest that the SLC4, SLC26, and nucleobase-ascorbate transporter families all share an e
101 s with UapA, a xanthine transporter from the nucleobase-ascorbate transporter family, show that the d
102 UraA H+-uracil symporter is a member of the nucleobase/ascorbate transporter (NAT) family of protein
104 trochemically between all four canonical DNA nucleobases at a single site within a target sequence of
108 anding of the interactions between Ag(I) and nucleobases, but also provide a unique structural compon
110 ite-specific installation of light-removable nucleobase-caging groups as well as photocleavable backb
111 itation, we have site-specifically installed nucleobase-caging groups within a plasmid promoter regio
112 mic considerations strongly suggest that all nucleobases can undergo ultrafast charge separation when
113 ed secondary active transport protein of the nucleobase-cation-symport family and a member of the wid
114 t of DNA, off-resonant excitonic coupling to nucleobases, charge-transfer, and resonant excitonic cou
117 s and the pathway, revealing the dynamics of nucleobase conformational exchange during the folding tr
118 design to optimize the sequence identity and nucleobase conformations of an RNA to match a desired ba
119 AMP; and (ii) aprataxin makes more extensive nucleobase contacts with guanine than with adenine, via
122 hemistry reactions were now combined to form nucleobase-containing sequence-controlled polymers in si
124 ndom, potentially leading to accumulation of nucleobase damage and mutations at specific sites within
125 HOMO-LUMO gaps than the terthiophene-linked nucleobases (DeltaE(g) approximately 1.8 eV vs 2.4 eV ba
126 monstrate the site-specific incorporation of nucleobase derivatives bearing fluorophores or affinity
128 y, these studies highlight the importance of nucleobase desolvation as a key physical feature that en
129 is controlled by energetics associated with nucleobase desolvation, whereas the rate constant for th
130 ion: a Ag10(+6) cluster develops within a 20-nucleobase DNA binding site, and this complex segregates
132 l reactions to form homopolymers of a single nucleobase (e.g., poly(A)n ) or homopolymers of specific
133 ions of amino acids that contact the guanine nucleobase efface kinase activity in vitro and Trl1 func
134 to the unique base-pairing properties of the nucleobases elicited by the inversion of the configurati
136 of peptide nucleic acid (PNA) with unnatural nucleobases enables the formation of PNA-RNA triplexes.
137 rmed between nucleotides bearing hydrophobic nucleobases, exemplified by the pair formed between d5SI
138 ing the fluorophore and quencher on the same nucleobase facilitates the design of short probes contai
139 insidious because neither of its constituent nucleobases faithfully transmit genetic information from
144 We simulated the high-energy synthesis of nucleobases from formamide during the impact of an extra
145 ence: Structural modifications of individual nucleobases (G > A > C) --> DNA backbone modifications -
146 s the context similarity of two stretches of nucleobases given the similarity over distributions of t
148 s of these compounds incorporating different nucleobases has been efficiently completed starting from
151 In both structures, Z:P pairs fit canonical nucleobase hydrogen-bonding parameters and known DNA hel
152 termediate in purine catabolism, the inosine nucleobase hypoxanthine is also one of the most abundant
153 es are well employed as a strategy to modify nucleobase in nucleoside analogues, although rare exampl
159 ive damage to DNA and hole transport between nucleobases in oxidized DNA are important processes in l
161 ne is also one of the most abundant modified nucleobases in RNA and plays key roles in the regulation
163 o explore the interaction of nucleosides and nucleobases in the context of the Maillard reaction and
166 hensive numerical model for the evolution of nucleobases in warm little ponds leading to the emergenc
167 The molecular recognition properties of the nucleobases instruct the formation of complex three-dime
168 ibe the inference of pairwise amino acid-RNA nucleobase interaction preferences using structural data
171 sting a potential role for direct amino acid-nucleobase interactions in the genesis of amino acid-bas
172 bring the transiently populated hole carrier nucleobases into better aligned geometries on the nanose
173 a uracil-azobenzene derivative in which the nucleobase is conjugated to a phenyldiazene tail is stud
175 d disadvantages of both types of fluorescent nucleobases is made, along with a perspective into the f
177 sions may reduce the electron density at the nucleobases, making them prone to further modifications
179 sults provide insights into the effects that nucleobase modification has on RNA structure and thermod
188 elevated temperatures lead to the release of nucleobases most likely via the traditional oxocarbenium
190 The building blocks of nucleic acids (i.e. nucleobases, nucleosides, and nucleotides) are desirable
192 oxygen atoms of the corresponding pyrimidine nucleobase (O2), and the 2'-SCF3 moieties participated i
193 ose direct coordination of metal ions by the nucleobases of conserved uridine and guanosine in helix
194 Thus, modified duplexes with an array of nucleobases on the exterior of the duplex were designed.
197 nated 2'-deoxyribonucleosides with canonical nucleobases or 2'-deoxy-2'-fluoroisocytidine ((F)iCd, 1c
198 ure conversion of brominated and chlorinated nucleobases or nucleobase precursors as starting materia
199 and stability of oligonucleotides containing nucleobase- or 4'-hydroxymethyl-transposed nucleotides a
207 mino-imidazo[1,2-a]-1,3,5-triazin-4(8H)-one) nucleobase pairs on the structural parameters of duplex
209 ogenic proteins, we show that a conjugate of nucleobase, peptide, and saccharide binds to peptides fr
210 ical fibrils through chiral self-assembly of nucleobase-peptide conjugates (NPCs), where achiral nucl
213 The inter-RRM linker forms the lid of the nucleobase pocket and we show using structure-guided mut
214 lly with the AG dinucleotide sequence via a "nucleobase pocket" formed by the beta-sheet surface of R
218 Furthermore, we showed that knowledge of nucleobase preferences allows statistically significant
219 reprogramming the self-assembly of existing nucleobases presents an alternative route to expand the
220 her levels than the corresponding methylated nucleobase products (m(5)C and m(6)A) in total RNA isola
221 rines at -1, an exocyclic amine at C2 on the nucleobase promotes cleavage at an alternative site and
226 considered in conjunction with reports that nucleobase radicals produce 1, this chemistry explains w
229 sidue prevent stable insertion of C into the nucleobase recognition pocket within the enzyme active s
231 Here, we have studied the effect of select nucleobase, ribose and backbone modifications on phospho
235 and phosphate backbone contacts, rather than nucleobase sequence, usually determines substrate specif
239 d oligonucleotides with 2,6-diaminopurine as nucleobase showed no significant thermal stability chang
241 3' CDN that anemone STING recognizes through nucleobase-specific contacts not observed in human STING
242 A polymerases differs from the nature of the nucleobase-specific kinetic interaction of the cyclopent
243 and donor along with a modified guanine (G) nucleobase, specifically 8-(4'-phenylethynyl)deoxyguanos
246 stabilized by long-range hydrogen bonds and nucleobase stacking and by a triloop that forms within i
251 inducing a total of approximately 26% single-nucleobase substitutions at the lesion site, whereas rep
252 eals that Msd specifically acts on mutagenic nucleobases such as 5-azacytosine and isoguanine and doe
253 rity of the X-bonds is formed by halogenated nucleobases, such as bromouridine, and feature excellent
254 present a summary of the most commonly used nucleobase, sugar and backbone modification, and conjuga
255 obtained were amino acids, carboxylic acids, nucleobases, sugars, and, most notably, four nucleosides
257 showing the outstanding sensitivity of both nucleobase surrogates to the small structural changes ac
258 m, we have utilized two distinct fluorescent nucleobase surrogates, 2-thienyl-3-hydroxychromone nucle
263 nt intermediate states by observing selected nucleobases that contribute specific interactions to the
264 conformational rearrangements of individual nucleobases that occur during ligand recognition of the
265 etal ions and the RNA moieties, particularly nucleobases, that bind metal ions is important in RNA ca
266 ry dust particles delivered organics such as nucleobases (the characteristic molecules of nucleotides
267 otophysical mechanisms in sulfur-substituted nucleobases (thiobases) is essential for designing prosp
268 alysis through the N3 position of an adenine nucleobase, thus expanding the repertoire of known mecha
271 sharp kink in the DNA, exposing the damaged nucleobase to active site residues that project into the
273 ability is due to propensity of the guanine nucleobase to self-associate into stable higher-order as
274 up to a linker moiety and an attachment of a nucleobase to the other end of the linker by a Mitsunobu
275 Rearranging hydrogen bonding groups adds nucleobases to an artificially expanded genetic informat
277 iazoacetate intermediate that can react with nucleobases to give carboxymethylated DNA adducts such a
281 This review focuses on 4'-hydroxymethyl- or nucleobase-transposed nucleosides, nucleotides, and nucl
282 activities of all known 4'-hydroxymethyl- or nucleobase-transposed nucleosides, nucleotides, and nucl
283 phosphate-containing nucleotides, varying in nucleobase type (A, G, C, U, m(7)G), phosphate chain len
285 Krebs cycle, the pentose phosphate pathway, nucleobases, UDP-sugars, glycogen, lipids, and proteins
288 irect incorporation of functional artificial nucleobases using a simple hairpin recognition element.
289 tegy involved the sequential introduction of nucleobases, using two stereocontrolled N-glycosidation
290 an alkyl chain and ethynyl attachment to the nucleobase was designed and incorporated into DNA by pri
291 nzymes and chemically synthesized ribose and nucleobase, we have developed an inexpensive, rapid chem
292 stablished that the 1'-CN group and C-linked nucleobase were critical for optimal anti-EBOV potency a
296 se events taking place after reaction of DNA nucleobases with OH radical have been widely investigate
298 the pol delta holoenzyme ensures that every nucleobase within an Okazaki fragment is faithfully dupl
300 ing this to be the case with two nonstandard nucleobases (Z, 6-amino-5-nitro-2(1H)-pyridone and P, 2-
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