ライフサイエンスコーパス: nucleotide sequence

1 tic analysis (FINS, Forensically Informative Nucleotide Sequencing).

2 ditionally, these models were built based on nucleotide sequence.

3 the biological signals present in the actual nucleotide sequence.

4 strate that ExsA and LcrF recognize a common nucleotide sequence.

5 ffect phenotypic diversity beyond changes to nucleotide sequence.

6 hesis that ExsA/LcrF/VirF recognize a common nucleotide sequence.

7 miRNAs that have slight variations in their nucleotide sequence.

8 dify gene expression without a change in the nucleotide sequence.

9 t localised patterns of error in the decoded nucleotide sequence.

10 pe and mutant appeared to depend upon pH and nucleotide sequence.

11 ce of host adaptation, i.e, changes in their nucleotide sequence.

12 ons just from the knowledge of the plain RNA nucleotide sequence.

13 by genomic aberrations, including changes in nucleotide sequences.

14 stinct genomic types (clusters) with related nucleotide sequences.

15 We found a striking divergence of the ROP16 nucleotide sequences.

16 mate the evolutionary history of recombining nucleotide sequences.

17 airing interactions encoded in their primary nucleotide sequences.

18 ral subpopulations are tagged with unique 20-nucleotide sequences.

19 designed by mutating the 5'- and 3'-terminal nucleotide sequences.

20 The PCR product was subjected to nucleotide sequencing.

21 A1 gene was amplified by RT-PCR, followed by nucleotide sequencing.

22 ss than one artifactual mutation per billion nucleotides sequenced.

23 containing a large number of genes with long nucleotides sequences.

24 The results, from 16S rRNA gene nucleotide sequencing (1583 pb accession no HE861352) an

25 romatin immunoprecipitation of OmpR:FLAG and nucleotide sequencing, 43 putative OmpR binding sites we

26 by recognizing the nonpalindromic 10- or 12-nucleotide sequence 5'-ATGCCGTCTGAA-3' (additional semic

27 rary RNA secondary structure S(0) for an RNA nucleotide sequence a = a(1),..., a(n), we say that anot

28 ltzmann factors exp(-E(a,s 0)/RT) of all RNA nucleotide sequences a compatible with target structure

29 genomics method that analyzes a multispecies nucleotide sequence alignment to determine whether it is

30 ing specificities that are not apparent from nucleotide sequence alone.

31 We show that changes in the nucleotide sequence alter the DNA conformation in the cr

32 each neuron is labeled with a unique random nucleotide sequence-an RNA 'barcode'-which is targeted t

33 ptase polymerase chain reaction (RT-PCR) and nucleotide sequence analyses.

34 Nucleotide sequence analysis of ORF30 was used to confir

35 Nucleotide sequence analysis of PCR-amplified fragments

36 al-time reverse transcription-PCR system and nucleotide sequence analysis of the VP1 coding region.

37 Nucleotide sequence analysis revealed a 4-bp (AGTC) inse

38 Intriguingly, nucleotide sequence analysis revealed that concomitant H

39 binding strength, which is determined by the nucleotide sequence and can be tuned to cover a range of

40 urther find that the influence of underlying nucleotide sequence and chromosomal architecture differs

41 two Cas9 orthologs, we unraveled underlying nucleotide sequence and epigenetic parameters.

42 o better understand the relationship between nucleotide sequence and hepatotoxicity, a structure-toxi

43 ndscape of an RNA is highly dependent on its nucleotide sequence and molecular environment.

44 EER in the orthologous human gene, although nucleotide sequence and position were only rarely conser

45 associated type I (VAI) RNA in terms of both nucleotide sequence and secondary structure but differs

46 We describe here the complete nucleotide sequence and structure of the JMRV genome, as

47 ered, in part, by the difficulty of altering nucleotide sequences and expression of genes in living c

48 o Cluster A because of their similar overall nucleotide sequences and genome architectures.

49 acting strain related publications, patents, nucleotide sequences and genome information from public

50 lesions in the respective strands of defined nucleotide sequences and in the genome overall.

51 This data consists of both the nucleotide sequences and per-base quality scores that in

52 The nucleotide sequences and predicted RNA structures of alp

53 We consider a world of nucleotide sequences and protocells.

54 ecise classification scheme based on partial nucleotide sequences and scattered antigenic relationshi

55 pecificity of oligo-probes, as well as their nucleotide sequences and thermodynamic features was perf

56 yped in our reference laboratory by means of nucleotide sequencing and extensive phylogenetic analyse

57 to have certain features, such as conserved nucleotide sequence, and in the case of protein coding D

58 exhibit high degeneracy if coded by separate nucleotide sequences, and elucidate how overlap-evoked c

59 edictions of virus phenotype or fitness from nucleotide sequence are imperfect and that predicting th

60 Palindromic consensus nucleotide sequences are also found at the genomic integ

61 ypically self-incompatible even though their nucleotide sequences are identical.

62 its synthesis have been identified, and the nucleotide sequences are known.

63 Periodicity in nucleotide sequences arises from regular repeating patte

64 The nucleotide sequences around the splicing donor and accep

65 It requires only nucleotide sequence as input and instantly predicts mult

66 validated this approach, which only requires nucleotide sequence as input, based on direct comparison

67 of ENA is to support and promote the use of nucleotide sequencing as an experimental research platfo

68 icroti AMA1 (BmAMA1) gene and determined its nucleotide sequence, as well as the amino acid sequence

69 e alternate approach of identifying genes on nucleotide sequence assemblies and generates longer prot

70 d the carAB operon to examine the effects of nucleotide sequence at and near the transcription start

71 stress, telomeres are segments of repetitive nucleotide sequence at each end of a chromosome that pro

72 sociated features and also prefer particular nucleotide sequences at the point of insertion.

73 isolation of the first A(H7N9) viruses, the nucleotide sequences became publically available.

74 replication product is tagged with a unique nucleotide sequence before amplification.

75 , by comparing putatively neutrally evolving nucleotide sequences between humans and chimpanzees and

76 o characterize and correct position-specific nucleotide sequence biases fills the need to recognize a

77 The preferred 10-nucleotide sequence bound by APUM23 is present within th

78 motifs are expected to be overrepresented in nucleotide sequences bound by a common protein or small

79 J8 (genotype 2b), which differed from the J6 nucleotide sequence by 24%.

80 Cpf1 requires a specific nucleotide sequence, called a protospacer adjacent motif

81 lation (C(r)) properties of strings, such as nucleotide sequence can be a useful parameter for identi

82 nine-rich (G-rich) homopurine-homopyrimidine nucleotide sequences can block transcription with an eff

83 y paper folding, is able to detect a 30-base nucleotide sequence characteristic of DNA from the hepat

84 nant genome features in common and contained nucleotide sequences closely related to certain cocircul

85 t advances have been made in the analysis of nucleotide sequences, computer programs for non-DNA disc

86 for XMRV infection by nested PCR assays with nucleotide sequence confirmation, Western blot assays fo

87 perature stress tests in vitro combined with nucleotide sequencing, confirmed this stability but iden

88 e with point mutations without chromosome or nucleotide sequence context bias would open the door to

89 binding sites, based on binding affinity and nucleotide sequence, contribute to three of the four pha

90 determinants for mitochondrial import and 20-nucleotide sequence corresponding to the mutated region

91 submission, maintenance and presentation of nucleotide sequence data and related sample and experime

92 ral pests are limited by the small amount of nucleotide sequence data available for tephritids.

93 The recent accumulation of nucleotide sequence data from multiple members of divers

94 is a repository for the world public domain nucleotide sequence data output.

95 is a repository for the world public domain nucleotide sequence data output.

96 een years as a result of new data, primarily nucleotide sequence data, and new methods, primarily mod

97 Along with genomic nucleotide sequence data, this metadata is growing rapid

98 eir locations solely on the basis of primary nucleotide sequence data.

99 lyses were conducted using Sanger population nucleotide sequencing data derived from blood samples fr

100 ssible to index the entire NCBI nonredundant nucleotide sequence database (a total of 109 billion bas

101 ages the data submitted to the International Nucleotide Sequence Database Collaboration (INSDC) again

102 Papers from the members of the International Nucleotide Sequence Database collaboration (INSDC) descr

103 ssification repository for the International Nucleotide Sequence Database Collaboration (INSDC), comp

104 ce data and is operated by the International Nucleotide Sequence Database Collaboration (INSDC).

105 The International Nucleotide Sequence Database Collaboration comprises thr

106 The members of the International Nucleotide Sequence Database Collaboration set out to ca

107 o PMC, which in analogy to the International Nucleotide Sequence Database Collaboration, aims to prov

108 volume of data archived by the International Nucleotide Sequence Database Collaboration.

109 and is in compliance with the International Nucleotide Sequence Database Collaboration.

110 n an assembly submitted to the International Nucleotide Sequence Database Consortium (INSDC) and the

111 uence records submitted to the International Nucleotide Sequence Database public archives.

112 hen they are searched against an appropriate nucleotide sequence database using tools such as BLAST t

113 A four-gene (nrITS, 28S, RPB2, EF1alpha) nucleotide sequence dataset consisting of 232 Laccaria s

114 The primary nucleotide sequence, deduced amino acid sequence, and Ig

115 sion (SHAPE) analysis was performed on a 365-nucleotide sequence derived from the 5' untranslated reg

116 tebrate genomes contain multiple endogenised nucleotide sequences derived from the non-retroviral RNA

117 n forest-classification model generated from nucleotide sequence descriptors identified two trinucleo

118 ature for penA types I to XXXVIII with novel nucleotide sequence designations; the full mtrR sequence

119 Reproducibility and accuracy of nucleotide sequence determination and resistance-associa

120 level of amino acid or noncoding regulatory nucleotide sequence determine tissue specificity.

121 There were several nucleotide sequence differences between JPV-BH and JPV-L

122 To understand the roles of these nucleotide sequence differences in pathogenicity in mice

123 L-LW was attenuated in mice, indicating that nucleotide sequence differences in the L gene play a cri

124 hable serologically, although characteristic nucleotide sequences differentiate 24 genotypes.

125 our MIR172 loci in Arabidopsis, the level of nucleotide sequence divergence between A. thaliana and A

126 chimpanzee PARV4 variant showed 18% and 15% nucleotide sequence divergence in NS and VP1/2, respecti

127 erse NPHVs showed 14% (range, 6.4% to 17.2%) nucleotide sequence divergence, with most changes occurr

128 rgely conserved despite an approximately 36% nucleotide sequence divergence.

129 Nucleotide sequence diversity was uniformly low and did

130 volutionary distances (p-distances) based on nucleotide sequence diversity, and plotted the median p-

131 tal structure of Pdx1 bound to the consensus nucleotide sequence does not explain how Pdx1 identifies

132 Nucleotide sequence does not provide an answer to the qu

133 gone significant changes in both protein and nucleotide sequences during the past half century.

134 Sequences (QGRS) in mRNAs, ncRNAs and other nucleotide sequences, e.g. promoter, telomeric and gene

135 ombinant that contains an insertion of a 171-nucleotide sequence encoding amino acids 21 to 76 of the

136 The results revealed that the nucleotide sequence encoding the 52 N-terminal amino aci

137 ion of Cx43, which resides upstream from the nucleotide sequence encoding the carboxyl terminus (nucl

138 We determined the nucleotide sequences encoding 2.3 x 10(7)unique HCDR3 am

139 d for expression in Salmonella, flanked with nucleotide sequences encoding the signal peptide (SS) an

140 n sequences could be more conserved than the nucleotide sequences encoding them.

141 The nucleotide sequence, excluding the sequence for the chlo

142 tic and experimental studies have identified nucleotide sequence features that may increase expressio

143 echanism of TRM4B by demonstrating that a 50-nucleotide sequence flanking m(5)C C3349 in MAIGO5 mRNA

144 with the read coverage depth and a putative nucleotide sequence for each operationally defined gene

145 We determined the complete nucleotide sequence for each virus.

146 ing (Ho) endonuclease cut site followed by a nucleotide sequence for multiple Myc epitopes at the 3'

147 ve database that contains publicly available nucleotide sequences for 370 000 formally described spec

148 ve database that contains publicly available nucleotide sequences for almost 260 000 formally describ

149 ve database that contains publicly available nucleotide sequences for more than 250,00 formally descr

150 ve database that contains publicly available nucleotide sequences for over 280,000 formally described

151 ve database that contains publicly available nucleotide sequences for over 300 000 formally described

152 ve database that contains publicly available nucleotide sequences for over 340 000 formally described

153 l RNA-positive controls and primer and probe nucleotide sequences for real-time RT-PCR testing.

154 ets of complete or near-complete protein and nucleotide sequences for the query protein families.

155 known as basecalling, i.e. the inference of nucleotide sequence from raw sequencing data.

156 nd a greater evolution of diversity in gp350 nucleotide sequences from AIM to CONV.

157 The majority of ROP16 nucleotide sequences from Colombian patients with ocular

158 gree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal struc

159 scriptome generated >12 million reads (total nucleotides sequenced >1 Gb).

160 Nucleotide sequencing has become increasingly common and

161 The unexpected nucleotide sequence homology between SLE patient-derived

162 the full fusion sequence and the partial 374-nucleotide sequence identified these isolates as genotyp

163 Existing motif databases contain extensive nucleotide sequences identified in binding experiments b

164 2007; 103 of 131 submissions (79%) had >99% nucleotide sequence identity and resistance mutation con

165 The average nucleotide sequence identity between two genomes can be

166 one of six PRRSV isolates (sharing 55 to 99% nucleotide sequence identity in ORF5).

167 Their genomes show up to 68% nucleotide sequence identity to Thogoto virus (segment 2

168 y functional despite retaining as low as 30% nucleotide sequence identity with rpoA genes from outgro

169 Protein-coding genes share 93% nucleotide sequence identity, whereas pseudogenes are on

170 d it describes the specific parameters for a nucleotide-sequence-identity-based method of organizing

171 at can make a single base change on specific nucleotide sequence in an RNA transcript.

172 mutagenesis analyses revealed a conserved 40-nucleotide sequence in the hpdH promoter, which plays a

173 both NS1 nicking and binding sites, to a 46-nucleotide sequence in the right-end hairpin.

174 ngly labeled substrates as a function of the nucleotide sequence in the vicinity of the fluorophore a

175 I footprint analysis identified the specific nucleotide sequence in these promoters that VtlR binds t

176 The nucleotide sequence in this region has been determined f

177 PCR identified B. enterica nucleotide sequences in biopsy specimens from all three

178 he other Cas9 orthologs, CjCas9 contacts the nucleotide sequences in both the target and non-target D

179 it can theoretically generate 10(26) unique nucleotide sequences in its target gene, legionella dete

180 Argonautes use the nucleotide sequences in miRNAs as guides for identifying

181 nd AAP were co-evolved from random or native nucleotide sequences in silico.

182 at 11.7 % of BESs are still unmatched to any nucleotide sequences in the current public databases des

183 ISRE) is identified in a region of conserved nucleotide sequences in the Il23a promoter.

184 Despite the tremendous drop in the cost of nucleotide sequencing in recent years, many research pro

185 ly model is extended to incorporate explicit nucleotide sequence information as well as simple aspect

186 of Illumina Body Atlas expression profiles, nucleotide sequence information, a BLAST search tool and

187 chive (ENA) is Europe's primary resource for nucleotide sequence information.

188 present globally comprehensive public domain nucleotide sequence information.

189 ng and providing comprehensive public-domain nucleotide sequence information.

190 Using each property, we convert the nucleotide sequence into a new sequence consisting of on

191 F protein cleavage and an insertion of a 198-nucleotide sequence into the HN-L intergenic region, res

192 Converting nucleotide sequences into short overlapping fragments of

193 odecahedral viral capsid, a computer-derived nucleotide sequence is evolved de novo that is optimal f

194 Its highly conserved nucleotide sequence is suggestive of its robustness unde

195 pression levels and open reading frame (ORF) nucleotide sequences is important for understanding natu

196 using molecular modeling, by means of a six-nucleotide sequence joining 3' and 5' ends of each stran

197 The nucleotide sequence, length, and dimerization properties

198 ution, as identification of conserved target nucleotide sequences may confer activity across marburgv

199 nments, evolutionary analysis, and signature nucleotide sequence motifs of the hemotropic Mycoplasma

200 This is the first report of the complete nucleotide sequence of a Plasmodium apicoplast DNA.

201 The nucleotide sequence of an ORF1a fragment (940 nucleotide

202 indicate an intricate interplay between the nucleotide sequence of DNA and its dynamic packaging int

203 overlapping open reading frame 2/3 (ORF2/3) nucleotide sequence of HEV.

204 The nucleotide sequence of mclS is highly conserved among M.

205 The complete nucleotide sequence of pXF-RIV5 is almost identical to t

206 e set of biomolecular reactions in which the nucleotide sequence of RNA molecules is altered.

207 iant Multipass calculates the likelihood and nucleotide sequence of several most likely sequences giv

208 viral RNA transcripts that do not change the nucleotide sequence of that RNA, is poised for a major e

209 The DNA nucleotide sequence of the 5'-flanking region contained

210 eveloping area of biotechnology in which the nucleotide sequence of the genome of living cells is pre

211 ng is the process of precisely modifying the nucleotide sequence of the genome.

212 strains and this could be predicted from the nucleotide sequence of the promoter region.

213 Here, we present the first high-quality nucleotide sequence of the repeat-rich (80.9%), 3.02-Gb

214 An incomplete match to the nucleotide sequence of the RNA-dependent RNA polymerase

215 Minor differences in nucleotide sequence of the U1 and U6 PSEAs determine RNA

216 elated organisms from an analysis of the raw nucleotide sequence of their genes.

217 Phylogenetic analysis of the nucleotide sequence of two 16S rRNA regions showed that

218 We obtained the nucleotide sequences of 65 individual DI-RNAs, identifie

219 However, by comparing the nucleotide sequences of all established Mga binding site

220 t information extracted from the surrounding nucleotide sequences of candidate poly(A) motifs can dif

221 Our analysis was based on the nucleotide sequences of COI and COII mitochondrial genes

222 enetic distances were estimated from aligned nucleotide sequences of HIV-1C env gp120.

223 Nucleotide sequences of influenza A virus isolates colle

224 We analyzed 651 attachment (G) glycoprotein nucleotide sequences of RSV B collected over 11 epidemic

225 The nucleotide sequences of the aap gene A-domain region and

226 The nucleotide sequences of the Env proteins were then compa

227 We determined the nucleotide sequences of the Prss31 gene in different mou

228 often unappreciated problem by modifying the nucleotide sequences of the target mRNA to make them non

229 ed and routed by instructions encoded in the nucleotide sequences of the track and motor.

230 In order to analyze nucleotide sequences of this length, their information c

231 Nucleotide sequencing of 18 mutants enabled assignment o

232 Nucleotide sequencing of the reaper insert in virus popu

233 ute flaccid paralysis (AFP) were compared by nucleotide sequencing of the VP1 capsid region (906 nucl

234 modification of phage DNA, no differences in nucleotide sequence or DNA modifications were detected,

235 The package takes either nucleotide sequence or genomic coordinates as input and

236 ns that were more correlated with either the nucleotide sequence or the DNA shape of their preferred

237 vata DNA that contained arsA and arsB, whose nucleotide sequences overlapped by 8 bp.

238 We propose that the nucleotide sequence preference may serve as an additiona

239 e HIV Rev protein forms a complex with a 351 nucleotide sequence present in unspliced and incompletel

240 and Candida lusitaniae Targeting rDNA region nucleotide sequences, primers specific for C. auris only

241 y tools have been developed to create random nucleotide sequences, protein coding sequences are subje

242 for calculating DNA structural features from nucleotide sequences provided by motif databases.

243 The nucleotide sequence provides vital molecular information

244 MNV infectious clones, each containing a 15-nucleotide sequence randomly inserted within a defined r

245 by the platform to be decoded directly into nucleotide sequence rather than its two-base 'color' enc

246 r characterization and identification of the nucleotide sequences recognized by BBE02 and BBQ67 will

247 is and mutagenesis studies have elucidated a nucleotide sequence region (V1) that allows differential

248 y to the sshRNAs and nowhere else in the 500-nucleotide sequenced region, while the viruses from the

249 urther, we determined that minimizing direct nucleotide sequence repeats within the TALE moiety permi

250 uropean Nucleotide Archive, Europe's primary nucleotide sequence resource, captures and presents glob

251 , i.e., NCBI BLAST, or they can only support nucleotide sequence search, e.g., MegaBLAST.

252 at protein PCR product was sequenced and the nucleotide sequence showed identity to PRSV YK strains i

253 CHN-49/2002, and demonstrated 52.5% to 54.2% nucleotide sequence similarity to the corresponding gene

254 n between ohr and ohrR that shares extensive nucleotide sequence similarity with so-called "OhrR boxe

255 machinery to their nucleic acid targets in a nucleotide sequence-specific manner.

256 Nucleotide sequence specificity of the signal is conferr

257 s has vastly expanded through advancement in nucleotide sequencing technologies and an increasing foc

258 High-throughput nucleotide sequencing technologies provide large amounts

259 previously reported that the removal of a 20-nucleotide sequence, termed the D sequence, from both en

260 , but not necessarily more variable in their nucleotide sequences, than nonmutators.

261 We truncated the 5' leader to a 300-nucleotide sequence that drives cap-independent translat

262 uding Escherichia coli pheL, has a conserved nucleotide sequence that ends with UUC_CCC_UGA.

263 and 23S rRNAs of Escherichia coli K12; that nucleotide sequences that could encode key fragments of

264 n factors (TFs) are commonly described using nucleotide sequences, the 3D DNA structure is recognized

265 re constructed for each viral gene using the nucleotide sequences, thereby defining novel allele leve

266 abases have served as vital repositories for nucleotide sequences, they do not accession all the meta

267 gnment algorithms, the exponential growth of nucleotide sequencing throughput threatens to outpace bi

268 is a cellular process that precisely alters nucleotide sequences, thus regulating gene expression an

269 first-order Markov model for the background nucleotide sequences to test the significance of affinit

270 ing random yet complementary double-stranded nucleotide sequences to the sample DNA of interest.

271 dition, in a subset of isolates we performed nucleotide sequencing to assess the level of conservatio

272 pig and two feral pigs and characterized by nucleotide sequencing to belong to genotype 3.

273 NA-enrichment methods and massively parallel nucleotide sequencing to comprehensively identify and ty

274 Samples positive for HCoV were submitted for nucleotide sequencing to determine the species.

275 d, representing clonal expansions (identical nucleotide sequence; "ultraprivate").

276 manner that can depend on the endogenous L1 nucleotide sequence, underscoring the complexity of L1 r

277 ds, which we refer to collectively as unique nucleotide sequence (UNS)-guided assembly, in which indi

278 sign synthetic, biologically inactive unique nucleotide sequences (UNSes) that facilitate accurate or

279 l elements (EVEs) genetically preserve viral nucleotide sequences useful to the study of viral evolut

280 eported QSOX1 cDNA, and confirmed its 3' end nucleotide sequence using RACE-PCR.

281 Analysis of nucleotide sequence variability for these in conjunction

282 MG192 nucleotide sequence variation correlated with estimated

283 ction was also noted in the pattern of miRNA nucleotide sequence variations.

284 protein sequence and phenotype although the nucleotide sequence was different.

285 The L. purpureus arcelin nucleotide sequence was homologous to Arl-3 and Arl-4 al

286 The complete nucleotide sequence was obtained and a phylogenetic stud

287 d that a subset of nucleosomes positioned by nucleotide sequence was sensitive to methylation where t

288 The assembled nucleotide sequence was up to 92% identical to two recen

289 We found that Mc1r nucleotide sequence was variable and that within our foc

290 The frequency of TCRbeta nucleotide sequences was significantly higher in PSC sam

291 ng segments whose CG content mimicked random nucleotide sequence were defective in unmanipulated cell

292 Thousands of screened 200-nucleotide sequences were analyzed to compare the divers

293 Nucleotide sequences were assembled using BioEdit and tr

294 ved that T cells with identical TCRbeta CDR3 nucleotide sequences were capable of recognizing donor a

295 Male-specific short nucleotide sequences were used to define a male-determin

296 for longer DNA fragments, regardless of the nucleotide sequence, which are in agreement with experim

297 vances in molecular biology, microscopy, and nucleotide sequencing will provide the tools to test the

298 Transfer RNA (tRNA) links messenger RNA nucleotide sequence with amino acid sequence during prot

299 used for analysis of homologous protein and nucleotide sequences with high sensitivity.

300 lated" DNA molecules that include such 15 bp nucleotide sequences would fall under the claim as grant