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1 -specific cDNA microarray and a whole genome oligonucleotide array.
2 g a high-density, exon-focused, whole-genome oligonucleotide array.
3 man, mouse and rats, by using a high-density oligonucleotide array.
4 One of the most popular formats is oligonucleotide array.
5 over 10,000 SNPs per individual on a single oligonucleotide array.
6 detection by hybridization to a high-density oligonucleotide array.
7 nucleotide resolution by hybridization to an oligonucleotide array.
8 enomic DNA and allowed to hybridize with the oligonucleotide array.
9 ool by using hybridization to a high-density oligonucleotide array.
10 eveloped and used for the design of a custom oligonucleotide array.
11 nd hybridizing the mixture to a high-density oligonucleotide array.
12 hybridization to a new type of high-density oligonucleotide array.
13 analysis was performed using a high-density oligonucleotide array.
14 rigin were investigated by use of a designed oligonucleotide array.
15 chieved by hybridization to high-density DNA oligonucleotide arrays.
16 acytidine and comparing gene expression with oligonucleotide arrays.
17 s at the mRNA level were also confirmed with oligonucleotide arrays.
18 sensitivity and specificity for high-density oligonucleotide arrays.
19 intradermal infection model using Affymetrix oligonucleotide arrays.
20 er of synthesis cycles required to construct oligonucleotide arrays.
21 ntrol cells were assessed using high-density oligonucleotide arrays.
22 f Dex-treated MM cells were determined using oligonucleotide arrays.
23 ly assessed by hybridization to high-density oligonucleotide arrays.
24 r assessing changes in gene expression using oligonucleotide arrays.
25 values associated with gene expression from oligonucleotide arrays.
26 of non-tumor-bearing mice using high-density oligonucleotide arrays.
27 e accurate than those obtained by commercial oligonucleotide arrays.
28 provide a more efficient strategy to produce oligonucleotide arrays.
29 ccording to an error model characteristic of oligonucleotide arrays.
30 fers that contain 49 individual high-density oligonucleotide arrays.
31 a on normal human tissues using high-density oligonucleotide arrays.
32 of young and aged mice by using high-density oligonucleotide arrays.
33 useful when applying double-stranded DNA on oligonucleotide arrays.
34 muscle (EOM), in adult mice by high-density oligonucleotide arrays.
35 uence-tagged sites (STSs) using high-density oligonucleotide arrays.
36 expression of all genes can be monitored by oligonucleotide arrays.
37 r array datasets generated on either cDNA or oligonucleotide arrays.
38 ysed for drug sensitivity using high-density oligonucleotide arrays.
39 ains of yeast was hybridized to high-density oligonucleotide arrays.
40 lled oligonucleotides were used as probes to oligonucleotide arrays.
41 shed by direct hybridization to high-density oligonucleotide arrays.
42 hybridization and ligation on complete n-mer oligonucleotide arrays.
43 e expression data obtained with high-density oligonucleotide arrays.
44 AC arrays or to around 2 kb resolution using oligonucleotide arrays.
45 ges were isolated and profiled on Affymetrix oligonucleotide arrays.
46 iver tissues were studied using high-density oligonucleotide arrays.
47 eins is often more challenging than creating oligonucleotide arrays.
48 ray analysis and mRNA expression analysis by oligonucleotide arrays.
49 ide and hybridized them against high-density oligonucleotide arrays.
50 or simultaneously scoring 116,204 SNPs using oligonucleotide arrays.
51 xpression analyses performed with commercial oligonucleotide arrays.
52 ied gene expression patterns by high-density oligonucleotide arrays (8,800 genes studied) at 30 minut
55 nes at the mRNA level by using both cDNA and oligonucleotide arrays, a striking regularity appeared:
56 lls was studied with the GeneChip Rat Genome oligonucleotide array (Affymetrix, Santa Clara, CA).
57 rd/rd and wild type (wt) mouse retina (U74A oligonucleotide arrays (Affymetrix)) over the known time
58 nd multihematopoietic lineages, we performed oligonucleotide array analyses targeting for prospective
61 ngase (LCE) that was identified initially by oligonucleotide array analysis of mRNA from SREBP transg
64 oth representational difference analysis and oligonucleotide array analysis with RNA derived from a C
68 were generated using the U133av2 Affymetrix oligonucleotide array and validated using real-time reve
69 published values determined by high-density oligonucleotide array and/or microarray analysis for snf
70 rom each point was analyzed using Affymetrix oligonucleotide arrays and a first order decay model was
71 w candidate genes, but reliable high-density oligonucleotide arrays and other novel techniques will a
72 red in rich or minimal media was analyzed by oligonucleotide arrays and quantitative multidimensional
73 and in primary AML blasts using cDNA arrays, oligonucleotide arrays and real-time reverse transcripti
76 p sequence-tagged lines, inexpensive spotted oligonucleotide arrays, and a near-complete whole genome
77 iments were performed using macaque-specific oligonucleotide arrays, and high-throughput proteomics r
78 lifications and deletions using high-density oligonucleotide arrays, and performed gene expression an
83 ly evaluate their impact when short-sequence oligonucleotide arrays are applied (Affymetrix Genome-Wi
87 Here we describe the utility of high-density oligonucleotide arrays as a rapid approach for comparing
88 , kRT-PCR, cDNA microarray, and high density oligonucleotide array assays are compared for their abil
89 rom a variety of array technologies, such as oligonucleotide array, bacterial artificial chromosome a
90 of all three families by use of a custom 10q oligonucleotide array-based comparative genomic hybridiz
91 primary neuroblastoma specimens analyzed by oligonucleotide array-based expression analysis, and the
92 ponsible for these divergent effects, we did oligonucleotide array-based gene expression profiling an
93 ble-stranding a commercially synthesized DNA oligonucleotide array, binding a TF directly to the doub
95 th flexible sample preparation, high-density oligonucleotide arrays can be tailored for even larger s
96 lished, however, whether SNP detection using oligonucleotide arrays can be used to accelerate the map
99 ere identified by more than one method (U133 oligonucleotide arrays, cDNA arrays or serial analysis o
100 using three different microarray platforms, oligonucleotide arrays, cDNA arrays printed on glass sli
102 compared to CNV assessment obtained using an oligonucleotide array CGH platform designed to query CNV
105 ed use of microarray technologies, including oligonucleotide array comparative genomic hybridization
108 the 17p13.3 CNVs by performing high-density oligonucleotide array comparative genomic hybridization,
109 ssue samples was analyzed with an Affymetrix oligonucleotide array complementary to more than 6,500 h
112 We have therefore designed a high-density oligonucleotide array containing all known mouse olfacto
114 lood cells of 12 unrelated individuals using oligonucleotide arrays containing 8406 exonic SNPs.
116 ing of endothelial cells was performed using oligonucleotide arrays containing probes designed to det
120 e useful statistical models for probe-level, oligonucleotide array data based on a multiplicative par
127 re we report the application of high-density oligonucleotide array (DNA chip)-based analysis to deter
130 We explored the utility of high-density oligonucleotide arrays (DNA chips) for obtaining sequenc
132 These features also suggest applications in oligonucleotide array/DNA chip technology when higher hy
133 data set comprising 204 in-situ synthesized oligonucleotide arrays, each hybridized with two-color c
134 The data included 25 Affymetrix high-density oligonucleotide array experiments, 23 expressed sequence
136 mine the detailed hybridization patterns in oligonucleotide array expression data for evidence of ge
137 elic state of the major QTL on chromosome 5, oligonucleotide array expression patterns for genes in t
139 e DNMT3B mutations and on control LCLs using oligonucleotide arrays for approximately 5600 different
140 Here we describe the use of high-density oligonucleotide arrays for genome-wide scans for LOH and
141 sults are relevant to the design of improved oligonucleotide arrays for high-throughput copy-number g
142 n used to design and synthesize high-density oligonucleotide arrays for monitoring the expression lev
144 performance measurements on three commercial oligonucleotide array formats that differ in probe desig
146 nal regulation of target genes, we performed oligonucleotide-array gene expression analysis by using
147 acy of microarray measurements obtained with oligonucleotide arrays (GeneChip, Affymetrix) with a lab
149 by bulk segregant analysis with high-density oligonucleotide array genotyping to a small putative Myb
159 These results demonstrate the usefulness of oligonucleotide arrays in monitoring mammalian gene expr
160 We profiled gene expression using Affymetrix oligonucleotide arrays in the BXD recombinant inbred str
162 s RNA targets to an Arabidopsis whole-genome oligonucleotide array indicate that commonly stress-asso
163 mic hybridization using a custom Agilent 1 M oligonucleotide array intended to cover 197 332 unique e
167 monstrate that this first-generation porcine oligonucleotide array is informative and the specificity
169 periments that involve multiple high density oligonucleotide arrays, it is important to remove source
170 ecipitation (MeDIP) profiles generated using oligonucleotide arrays (MeDIP-chip) or next-generation s
175 g a human colon cancer dataset consisting of oligonucleotide arrays of normal, adenoma and carcinoma
178 t performance was achieved with high-density oligonucleotide arrays, oligonucleotides >/=50 bases (b)
179 ession analysis using the Affymetrix HG U133 oligonucleotide arrays on 85 diffuse infiltrating glioma
182 tigated the kinetics of DNA hybridization to oligonucleotide arrays on high-capacity porous silica fi
183 idization with Affymetrix human high-density oligonucleotide arrays or GeneChip using distantly relat
184 We have evaluated the effectiveness of an oligonucleotide array, originally designed to detect sin
186 ing performance of the two main high-density oligonucleotide array platforms in the ENCODE regions of
187 onance imaging (SPRi) on in situ synthesized oligonucleotide arrays prepared on carbon-on-metal subst
188 DA) using direct sequencing and high density oligonucleotide arrays probing >10,000 SNP alleles.
189 nt array-based CNV detection platforms, long-oligonucleotide arrays promise the highest resolution.
191 massively parallel synthesis of high-density oligonucleotide arrays provides a potential source, once
192 how that DNA hybridization with high-density oligonucleotide arrays provides rapid and convenient det
195 atch can be differentiated with phylogenetic oligonucleotide arrays, reliable specific detection at t
197 hree independent experiments to a commercial oligonucleotide array representing more than 22,000 tran
199 brain ageing at the molecular level, we used oligonucleotide arrays representing 6,347 genes to deter
201 hyperplasia (MNH) using Affymetrix HG_U95Av2 oligonucleotide arrays representing approximately 10,500
203 was generated using the Murine Genome U74Av2 oligonucleotide array (representing approximately 6000 w
205 single glass wafer containing 49 individual oligonucleotide arrays separated by gaskets within a cus
206 roarray analysis using a whole-genome 60-mer oligonucleotide array showed that the dms operon is indu
207 ee different generations of Affymetrix Human oligonucleotide arrays, showed significant improvement i
208 rom various tissues to a set of high-density oligonucleotide arrays spanning the entire genome allowe
211 ent in situ hybridization, cell sorting, and oligonucleotide array technology are currently being exp
214 d for each array, we anticipate that ink-jet oligonucleotide array technology will be useful in a wid
217 ensor chip based on an allele-discriminating oligonucleotide array that enables genotyping for both m
218 132 diagnostic samples using higher density oligonucleotide arrays that allow the interrogation of m
219 morphisms (SNPs), using generic high-density oligonucleotide arrays that contain thousands of presele
221 es in two human cell lines with high-density oligonucleotide arrays that enable the measurement of de
222 esence or absence of mutants was detected by oligonucleotide arrays that hybridize to 20-nucleotide "
223 ently, Affymetrix developed the high-density oligonucleotide arrays that tile all the non-repetitive
224 sed a method for light-directed synthesis of oligonucleotide arrays that we developed to generate two
225 position of the poly(A) addition site using oligonucleotide arrays tiling 1% of the human genome.
229 Here, we used TCR-transgenic Th cells and oligonucleotide arrays to analyze the differences betwee
236 s by converting high-density single-stranded oligonucleotide arrays to double-stranded (ds) DNA array
240 this study, we used Affymetrix high-density oligonucleotide arrays to identify the global gene expre
245 or molecular targeting, we utilized scanning oligonucleotide arrays to probe the secondary structure
246 ion of BAC-based and high-density customized oligonucleotide arrays to resolve the molecular basis of
251 ether with the ATH1 Arabidopsis whole-genome oligonucleotide array, to identify genes that are prefer
253 We have designed a prokaryotic high density oligonucleotide array using the complete Escherichia col
256 irst showed that fluorescent signal from the oligonucleotide array varies in proportion to both decre
258 ene expression profiling using a 16 755-gene oligonucleotide array was performed to identify transcri
259 cificity of identifying HLA-B SNPs using the oligonucleotide arrays was evaluated by blinded analysis
263 ipitation and expression analysis on a tiled oligonucleotide array, we identified a gain-of-function
267 rays, especially from recent high-resolution oligonucleotide arrays, we found some evidence that up t
289 s determined using Affymetrix wheat GeneChip oligonucleotide arrays which have probes for 55,052 tran
290 acteristics allows the prospective design of oligonucleotide arrays which show increased sensitivity
291 ysate-pulsed-DCs, using Affymetrix MG-U74Av2 oligonucleotide arrays, which contain approximately 12,0
293 responses to drought using a custom designed oligonucleotide array with 21,901 different probes.
294 nd human B cell line (BJAB) were analyzed by oligonucleotide array with approximately 22,000 human tr
295 expression analysis of prostate cancer using oligonucleotide arrays with 63,175 probe sets to identif
297 it is possible to synthesize plastic-backed oligonucleotide arrays with feature sizes as small as 14
298 sing IRF-5 or IRF-7 were determined by using oligonucleotide arrays with probe sets representing abou
300 otide polymorphisms (SNPs) with high-density oligonucleotide arrays without the need for locus-specif
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