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1 n vitro-translated proteins and radiolabeled oligonucleotide probe.
2 polymerase chain reaction-sequence-specific oligonucleotide probe.
3 V8 proteolytic-digest fragment to design an oligonucleotide probe.
4 dization with a set of fluorescently labeled oligonucleotide probes.
5 saturating fluorescent DNA dye and unlabeled oligonucleotide probes.
6 to gold surface-attached single-stranded DNA oligonucleotide probes.
7 n differences in hybridization to individual oligonucleotide probes.
8 all three criteria for selection of optimal oligonucleotide probes.
9 systematic problems associated with specific oligonucleotide probes.
10 aces to serve as stencils for patterning the oligonucleotide probes.
11 , near the steric-saturation limit for short oligonucleotide probes.
12 was then hybridized successively to pairs of oligonucleotide probes.
13 directly functionalized with amino-modified oligonucleotide probes.
14 and subtype-specific covalently immobilized oligonucleotide probes.
15 products to membrane-bound, highly specific oligonucleotide probes.
16 hundreds of human precursor and mature miRNA oligonucleotide probes.
17 ely fails to bind the same site within short oligonucleotide probes.
18 nd enhanced specificity compared with linear oligonucleotide probes.
19 orophores or functional groups conjugated to oligonucleotide probes.
20 nce of exogenous dNTPs by annealing specific oligonucleotide probes.
21 nd enhanced specificity compared with linear oligonucleotide probes.
22 ferent fluorescently labeled allele-specific oligonucleotide probes.
23 chip is measured by 20 pairs of independent oligonucleotide probes.
24 t it obviates gel electrophoresis or labeled oligonucleotide probes.
25 ied by the hybridization of species-specific oligonucleotide probes.
26 xes were inserted at various positions along oligonucleotide probes.
27 destabilised to assist its interaction with oligonucleotide probes.
28 ntly labeled query sequence to surface-bound oligonucleotide probes.
29 Diagnosis of ETEC infection was done with oligonucleotide probes.
30 by their abilities to specifically bind DNA oligonucleotide probes.
31 n reaction (PCR) using fluorescently labeled oligonucleotide probes.
32 in plants by using locked nucleic acid (LNA) oligonucleotide probes.
33 e to facilitate the design of DNA microarray oligonucleotide probes.
34 onstruct a PPBE model prior to designing new oligonucleotide probes.
35 mer sensing element with covalently attached oligonucleotide probes.
36 sting ways in which to improve the design of oligonucleotide probes.
37 tern, which can be differentially altered by oligonucleotide probes.
38 lls using locked nucleic acid (LNA)-modified oligonucleotide probes.
39 rray hybridisation intensities even for long oligonucleotide probes.
40 , this approach has not been used for longer oligonucleotide probes.
41 pecies with 48 or more short, singly labeled oligonucleotide probes.
42 similarity with target sequences (within the oligonucleotide probe 50 base target region) will contri
43 tion between p50 and C/EBP proteins using an oligonucleotide probe (-63/-41) derived from the CRP pro
44 g by hybridization to high-density arrays of oligonucleotide probes, 97.4% were concordant by both me
45 tu hybridization with a T. whipplei-specific oligonucleotide probe, a broad-range bacterial probe, an
46 ase mutants was analyzed using a 5'-proximal oligonucleotide probe and a series of oligonucleotide pr
47 , duplex formation between a single-stranded oligonucleotide probe and a structured region of a targe
48 by a competitive EMSA using a consensus E2F oligonucleotide probe and by demonstrating a supershift
50 nal for various spacer molecules between the oligonucleotide probe and the gold surface revealed that
51 on and immunohistochemistry, using antisense oligonucleotide probes and a PIP4Kgamma-specific antibod
52 archers to download a complete repository of oligonucleotide probes and design customized capture ass
53 nt proteins to illuminate mRNAs, use labeled oligonucleotide probes and exploit aptamers that render
54 pression measurements made with spotted long oligonucleotide probes and in situ-synthesized 25-mer pr
57 ueness score, U, a novel quality measure for oligonucleotide probes and present a method to quickly c
58 A targets should facilitate the use of short oligonucleotide probes and promote development of generi
60 s that occur in an ungapped alignment of the oligonucleotide (probe) and a longer sequence (target).
61 or dot blot hybridization with (32)P-labeled oligonucleotide probes, and we compared these methods to
62 onstructed for this region using overlapping oligonucleotides probes, and BAC-end sequences (BES) wer
63 "D-loop." Sequentially, chemically modified oligonucleotide probes anneal to the displaced DNA stran
64 Specificity studies showed that for a given oligonucleotide probe any 'non-target' transcripts (cDNA
66 surface of the islands, and allele-specific oligonucleotide probes are attached to discrete spots on
68 cyanine-dye labeled 2'-deoxy and 2'-O-methyl oligonucleotide probes are inside living cells for >5 h,
73 fragment, a 16 to 23S rRNA spacer region, to oligonucleotide probes arranged in lines on a membrane s
74 of a high-density Arabidopsis'whole genome' oligonucleotide probe array for expression analysis (the
75 ing method was determined using high density oligonucleotide probe arrays as a read-out methodology a
77 ation kinetics of oligonucleotide targets to oligonucleotide probe arrays synthesized using photolith
78 ysis of transcripts detected by high-density oligonucleotide probe arrays, to predict the presence of
79 of label position and secondary structure in oligonucleotide probes as a function of hybridization bu
80 nt work using quenched fluorescently labeled oligonucleotide probes as sensors for RNA in bacterial a
82 found that the non-specific accumulation of oligonucleotide probes at mitochondria was driven by mit
83 s described that employs the sequence of the oligonucleotide probe attached to each microsphere as po
84 frequency and voltage for target binding to oligonucleotide probes attached to the sensor array surf
86 DNA library was screened by using degenerate oligonucleotide probes based on the amino acid sequence
87 c hybridization (aCGH) platform with 385 000 oligonucleotide probes based on the reference genome seq
89 rane-based cDNA macroarrays and high-density oligonucleotide probe-based microarrays identified induc
91 crocantilever biosensors functionalized with oligonucleotide probes, before and after hybridization w
92 drolase whose homology was restricted to the oligonucleotide probe (BestFit quality=215 versus 100 fo
94 en Ref-1/Ape was immunoprecipitated from the oligonucleotide probe, both HIF-1 and p300 remained prob
95 By gel-shift analysis, the corresponding oligonucleotide probe bound endogenous FKHRL1 in an LPS/
97 large majority of all genes using 1 million oligonucleotide probes built on 1.2-cm2 glass substrates
98 These genes are targets for only 22% of the oligonucleotide probes but account for 69% of the polymo
100 tantly, our data indicate that intracellular oligonucleotide probing can be a powerful complement to
101 wells, each specifically functionalized with oligonucleotide probes capable of capturing biotinylated
105 genomic DNA of E. coli O157:H7 by a specific oligonucleotide probe coated onto the transistor array r
106 344 genes that were represented in both long oligonucleotide probe collections and the in situ-synthe
108 idize with good specificity and stability to oligonucleotide probes composed of the standard bases.
109 (i) hybridization of a target DNA to a Ramp-oligonucleotide probe conjugate, followed by (ii) specif
111 e performed using the whole-cell extract and oligonucleotide probes consisting of the two conserved E
112 BP that contains the CXXC domain binds to an oligonucleotide probe containing a single CpG site, and
117 n HMG-domain proteins and a series of 16-mer oligonucleotide probes containing both a 1,2-intrastrand
119 e inducible complexes could be detected with oligonucleotide probes containing either the proximal or
121 s) detection using digoxigenin (DIG)-labeled oligonucleotide probes containing locked nucleic acids (
122 -down assays revealed that GATA-3 could bind oligonucleotide probes containing the wild type but not
124 ed to decreased retardation of a labeled DNA oligonucleotide probe corresponding to the -88/-66 regio
125 The method was evaluated using an array of oligonucleotide probes corresponding to IS6110 insertion
127 Electrophoretic mobility shift assays using oligonucleotide probes demonstrated that TGF-beta rapidl
133 43 animal) were tested with three individual oligonucleotide probes directed against an Asp-87-to-Asn
136 e first time a "click" chemistry approach to oligonucleotide probe elongation as a novel approach to
137 analysis with sense RNA and strand-specific oligonucleotide probes followed by 5' rapid amplificatio
138 y deposition (or 'spotting')of a single long oligonucleotide probe for each gene may be an attractive
140 SNP arrays, e.g. use multiple sets of short oligonucleotide probes for each known SNP, and require e
142 a web server that facilitates design of DNA oligonucleotide probes for high-density tiling arrays, w
143 An important consideration in the design of oligonucleotide probes for homogeneous hybridization ass
144 RNA sample, is required to design successful oligonucleotide probes for quality microarray results.
145 , synthesis and application of pyrene binary oligonucleotide probes for selective detection of cellul
146 e in situ hybridization technique using rRNA oligonucleotide probes for the identification of M. tube
148 gle-step, 2 min assay, using only one set of oligonucleotide probes, for a total analysis time of les
150 Using gene expression data covering 39,296 oligonucleotide probes from 1109 human liver samples, we
151 raction with RY elements present in 40-42 bp oligonucleotide probes has been shown in vitro for Arabi
155 l format, where an immobilized complementary oligonucleotide probe hybridized with the biotinylated t
156 d nucleotides were differentiated for 50-mer oligonucleotide probes hybridized at 50, 45 and 42 degre
157 aptured, purified, and preconcentrated by an oligonucleotide probe immobilized in an in situ polymeri
158 tion of the PCR product to a fungus-specific oligonucleotide probe immobilized on a nylon membrane.
159 e duo-genosensor consisting of two different oligonucleotide probes immobilized covalently on the sur
161 antibody binding to the corresponding hapten-oligonucleotide probes immobilized on the nanostructured
162 ver, mGBP-2 inhibits p65 binding to a kappaB oligonucleotide probe in gel shift assays and to the MMP
163 from 206 isolates was characterized by using oligonucleotide probes in a checkerboard hybridization a
165 am) and motif finding algorithms to identify oligonucleotide probes in conserved amino acid regions a
166 eins inhibit the ability of ESE-1 to bind to oligonucleotide probes in gel mobility shift assays.
167 ribe the use of modified fluorescent-labeled oligonucleotide probes in the sequence-specific detectio
168 strand-DNA-specific nuclease and overlapping oligonucleotide-probes interrogating WT-DNA targets and
170 The intensity of fluorescence bound to each oligonucleotide probe is intended to reveal which sequen
171 rget oligonucleotide to magnetic bead-linked oligonucleotide probes is followed by binding of the str
173 Molecular beacons are stem-loop hairpin oligonucleotide probes labeled with a fluorescent dye at
174 Molecular beacons are stem-loop hairpin oligonucleotide probes labeled with a fluorescent dye at
178 s, which are based on RNA template-dependent oligonucleotide probe ligation, have been developed to m
181 y viruses in susceptible hosts, high-density oligonucleotide probe microarray technology was used.
183 ty and performance of 50mer oligonucleotide (oligonucleotide probe) microarrays, gene-specific oligon
184 aptamer-based) sensors, are comprised of an oligonucleotide probe modified with a redox reporter (in
186 ient heuristics for minimizing the number of oligonucleotide probes needed for analyzing populations
188 tudy and show that these disulphide-modified oligonucleotide probes offer significant improvements in
190 rticles (AuNPS) followed by coating of ZAP70 oligonucleotide probe on the surface to detect specific
193 Here, we demonstrate in situ synthesis of oligonucleotide probes on carbon-based substrates using
194 perties, so we adapted it to handle the long-oligonucleotide probes on our arrays (hence LO-BaFL).
195 s paper, we demonstrate in situ synthesis of oligonucleotide probes on poly(dimethylsiloxane) (PDMS)
196 ives rise to a heterogeneous distribution of oligonucleotide probes on the surface, negatively affect
197 cle amplification of circularizable, linear, oligonucleotide probes (padlock probes) was developed.
202 itu hybridization using fluorescence-labeled oligonucleotide probes, PCR amplification of species-spe
204 it is essential to design microarrays whose oligonucleotide probes produce hybridization intensities
205 protocol that utilizes multiple radioactive oligonucleotide probes, providing for increased sensitiv
207 atform containing in situ-synthesized 60-mer oligonucleotide probes representing approximately 22,000
210 region accessibility using complementary RNA oligonucleotide probes revealed significant changes in g
211 DNA positive specimens with species-specific oligonucleotide probes revealed that 44% of the 50 ather
212 hybridization with DNA microchips containing oligonucleotide probes selected for identification of 16
213 hwestern blot analyses indicate that the IUR oligonucleotide probe selectively binds a 115-kDa protei
214 racterized by single-stranded DNA target, an oligonucleotide probe, separated from a helper oligonucl
215 kemia (CML) by immobilizing amine terminated oligonucleotide probe sequence containing 22 base pairs,
216 covalently immobilizing the thiol-terminated oligonucleotide probe sequence via a displacement reacti
217 irs using a combination of sequence-specific oligonucleotide probes, sequence-specific priming, and s
225 (most commonly methylene blue or ferrocene) oligonucleotide probes site-specifically attached to an
226 ce the specificity of hybridization, such as oligonucleotide probe size, spacer length, surface densi
227 on of DNA or RNA targets to surface-tethered oligonucleotide probes (solid-phase hybridization) and h
228 Finally, CLE with fluorescence labelled oligonucleotide probe specific for C. difficile was perf
229 gels by Southern hybridization with a 20-mer oligonucleotide probe specific for the Salmonella invA g
232 and hybridization to the multiple individual oligonucleotide probes specific for each Listeria specie
233 DNA microarray using microsphere-immobilized oligonucleotide probes specific for the Salmonella invA
240 ed, in a strand displacement reaction, by an oligonucleotide probe that becomes covalently attached t
242 sure that the target DNA binds reliably, the oligonucleotide probes that are attached to the chip arr
243 uspension hybridization format with specific oligonucleotide probes that are covalently bound to the
244 Many genomics assays use profluorescent oligonucleotide probes that are covalently labeled at th
246 amplicons are then hybridized to immobilized oligonucleotide probes that are specific for known IS611
248 measurements should facilitate the design of oligonucleotide probes that contain interactive fluoroph
252 oximal oligonucleotide probe and a series of oligonucleotide probes that were complementary to overla
256 el method for direct QD labeling of modified oligonucleotide probes through streptavidin and biotin i
259 er of base pairs formed upon the addition of oligonucleotide probes to a solution containing the vira
260 nt of the sequence-dependent response of the oligonucleotide probes to achieve quantitative comparabi
261 Targeted RNA sequencing (CaptureSeq) uses oligonucleotide probes to capture RNAs for sequencing, p
262 MEC, RT-PCR and hybridization using specific oligonucleotide probes to CIITA promoter sequences ident
263 eleost Fundulus heteroclitus with degenerate oligonucleotide probes to conserved alpha-helical region
265 parameters that influence the attachment of oligonucleotide probes to GAPSII slides, shedding light
267 checkerboard hybridizations performed using oligonucleotide probes to regions encoding 5 variable lo
268 le fluorescent locked nucleic acid (LNA)-DNA oligonucleotide probes to the miRNA of interest, and the
269 2) carbodiimide coupling of amine-terminated oligonucleotide probes to the surface (via an amide bond
270 llow covalent attachment of amine-terminated oligonucleotide probes to these surface groups through c
273 get duplex allows the use of extremely short oligonucleotide probes, up to tetranucleotides in length
276 arget sequences and 7693 short perfect match oligonucleotide probes, we have assessed current approac
277 paper, and then biotinylated single-stranded oligonucleotide probes were conjugated onto the UCPs via
279 atarrhalis DNA microarrays containing 70-mer oligonucleotide probes were designed from the genome-der
281 m has been reported in which single-stranded oligonucleotide probes were doubly labeled with adjacent
282 ing-based photolithography technique, 36-mer oligonucleotide probes were found to be more useful in i
283 el RNA target to which fluorescently labeled oligonucleotide probes were hybridized in a complex back
284 We further demonstrated that the dye-labeled oligonucleotide probes were likely on/near the surface o
285 e but did not identify nine isolates because oligonucleotide probes were not available in the current
286 nucleotide probe) microarrays, gene-specific oligonucleotide probes were spotted along with PCR probe
289 ging inside live cells based on programmable oligonucleotide probes, which self-assemble through the
290 red with the common approach that employs an oligonucleotide probe with a covalently linked fluoropho
292 Molecular beacons are dual-labeled, hairpin oligonucleotide probes with a reporter fluorophore at on
293 by band-shift assays to bind double-stranded oligonucleotide probes with at least two internal tandem
294 has been developed that uses biotin-labeled oligonucleotide probes with chemiluminescence detection
295 ridization can suffer from the drawback that oligonucleotide probes with different nucleotide composi
297 soenergetic pentamer and hexamer 2'-O-methyl oligonucleotide probes with LNA (locked nucleic acid) an
298 re a series of 5'TIAM(Tb)/3'BHQ dual-labeled oligonucleotide probes with no secondary structure.
300 using molecular beacons (MBs) - fluorogenic oligonucleotide probes - with minimal target engineering
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