ライフサイエンスコーパス: opal

1 cluding gypsum, clays, and amorphous silica (opal).

2 ion of an MIP film in the form of an inverse opal.

3 sembling the geological formation of natural opal.

4 ER force field as implemented in the program OPAL.

5 DIANA and energy-minimized with the program OPAL.

6 ase results in a mesostructured AgCl inverse opal.

7 es that are subsequently occluded within the opal.

8 or at the inefficient termination signal Pro-opal.

9 visual appearance of self-assembled polymer opals.

10 9 +/- 1.6), and gain in CAL (1.7 +/- 1.5), V-OPAL (2.1 +/- 1.9), and H-OPAL (4.7 +/- 1.4) were observ

11 Th proxy), phytoplankton productivity (using opal, (231)Pa/(230)Th and excess Ba), and the degree of

12 L (1.7 +/- 1.5), V-OPAL (2.1 +/- 1.9), and H-OPAL (4.7 +/- 1.4) were observed (P < or = 0.05).

13 a set of immune marker antibodies, with the Opal 7 color Kit (PerkinElmer) in the same tissue sectio

14 Opal, a multiple alignment tool that implements the best

15 Chimera uses Opal, a toolkit for wrapping scientific applications as

16 e applications on the servers are powered by Opal, a toolkit that allows users to wrap scientific app

17 erial is silica-rich ( approximately 39 wt.% opal-A and/or high-SiO2 glass and opal-CT), volatile-bea

18 Here we present deep-sea records of biogenic opal accumulation and sedimentary nitrogen isotopic comp

19 n sinking fluxes and the spatial patterns of opal accumulation in oceanic systems with different temp

20 ord that suggests the paradoxical decline in opal accumulation rate in the glacial EEP results from a

21 d in underlying glacial sediments, but lower opal accumulation rates cast doubts on the importance of

22 g well-defined mesostructured silver inverse opal (Ag-IO) electrodes, it is demonstrated that mesostr

23 ques: The Optimized PatchMatch Label fusion (OPAL) algorithm for localising and approximately segment

24 Opal allows both web forms-based access and programmatic

25 We observed extensive opal and amber stop codon reassignments in bacteriophage

26 rRNA, however, lowered tagging levels at Pro-opal and rare Arg codons, but not at the 3' end of an mR

27 The aromatic profiles of Dark Opal and Red Rubim varieties (in vivo plants, in vitro s

28 The tantalizing colours of precious opals and the colour of some species of birds are exampl

29 enomic sequences encoding both a stop codon (opal) and an open reading frame (arginine) as a general

30 he vertical open probing attachment level (V-OPAL) and horizontal open probing attachment level (H-OP

31 nding monoliths, nanomesh materials, inverse opals, and dense gram-scale nanocrystalline powders of i

32 port here an oriented peptide array library (OPAL) approach that should facilitate high throughput pr

33 dered macroporous (3DOM) products or inverse opals are of interest for numerous applications, both fo

34 horizontal open probing attachment level (H-OPAL), as well as furcation entrance width (FW) and heig

35 Gold inverse opal (Au-IO) thin films are active for CO2 reduction to

36 ple Python program to demonstrate how easily Opal-based web services can be accessed from within an a

37 Enhanced diatom opal burial in Sargasso Sea sediments indicates that sil

38 We show that opal burial rates, and thus upwelling, were enhanced dur

39 These robust SiO(2) inverse opals can be transformed into various materials that ret

40 les or Co3O4 nanoplatelets, and SiO2 inverse opals coated with Fe3O4 are fabricated, all of which sho

41 Ni inverse opals coated with SnO2 nanoparticles or Co3O4 nanoplatel

42 ed at the uracil target causing reversion of opal codon 14 in the Escherichia coli lacZalpha gene.

43 ysteine (Sec) incorporation requires the TGA opal codon and a downstream Sec insertion sequence (SECI

44 ge is provided to ONNV by the presence of an opal codon between nsP3 and nsP4 in Anopheles gambiae, s

45 ntage provided to ONNV by the presence of an opal codon between nsP3 and nsP4 is related to mosquito

46 translationally inserted at a predefined UGA opal codon by means of Sec-specific translation machiner

47 ression of GPx3(x73c), a peroxidase-negative OPAL codon mutant, in DU145 and PC3 cells also increased

48 cleotide) gapped DNA substrate containing an opal codon to assess the effect of the amino acid substi

49 hich suppression of the selenocysteine (Sec) opal codon was coupled to bacteriophage plaque formation

50 corporated into proteins by recoding the UGA opal codon with a specialized elongation factor (SelB in

51 led to efficient, orthogonal suppressors of opal codons and the four-base codon, AGGA.

52 In-frame TGA (opal) codons are found in most genes (85%), often at loc

53 Graphite inverse opals, comprising 40-angstrom-thick layers of graphite s

54 the snow-capped (Lepidothrix nattereri) and opal-crowned (Lepidothrix iris) manakins of the Amazon b

55 manakin) or iridescent whitish-blue to pink (opal-crowned manakin) in parental species but are a much

56 Porous silica opal crystals were sintered to form an intersphere inter

57 in our study, is freely available at http://opal.cs.arizona.edu.

58 ly 39 wt.% opal-A and/or high-SiO2 glass and opal-CT), volatile-bearing (16 wt.% mixed cation sulfate

59 SR1 encodes a divergent tRNA(Gly)UCA with an opal-decoding anticodon.

60 urally occurring amorphous silica (including opal) deposits, suggesting that incorporation of U into

61 The Opal-enabled service model is useful for a wide range of

62 This generated specific carbon and opal export regimes turning the glacial seasonal sea-ice

63 high-quality, chemically tailorable inverse opal films for a variety of applications.

64 ssembling highly ordered, crack-free inverse opal films over a centimeter scale.

65 and inhomogeneities of the resulting inverse opal films.

66 is finding, along with similar shifts in the opal flux record, suggests that millennial-scale events

67 Here we use the geochemistry of opal-forming organisms from different water depths to de

68 mbinants that adhere to cells via GC OpaA or Opal fusion proteins, suggesting that additional neisser

69 cking performances for porous copper inverse opals having pore diameters from 300 to 1000 nm by measu

70 codon reassignments in bacteriophages and of opal in bacteria.

71 Front and the subsequent burial of biogenic opal in underlying sediments are limited by this silicon

72 sotope measurement of diatom and radiolarian opal, in combination with numerical simulations.

73 OPAL integrates the principles of both the oriented pept

74 han Farrar's 'striped' approach, however the opal library is faster for single-threaded applications.

75 ble to modify this pair to decode either the opal nonsense codon, TGA, or the four-base codon, AGGA,

76 e between nsP3 and nsP4 was replaced with an opal, ochre, or amber stop codon.

77 ordered binary superlattices (also known as opals or colloidal crystals), retaining the size tunable

78 o a lipophilic Pt(IV) complex [Pt(DACH)(OAc)(OPal)(ox)] (1), containing both lipophilic and hydrophil

79 [Pt(DACH)(OAc)(OPal)(ox)] incorporated nanoparticles (2) presented a me

80 Inside the capillary tube, inverse opal photonic crystal (IO PhC) was fabricated using the

81 o acting as a dielectric mirror, the inverse opal photonic crystal caused a significant change in dye

82 In parallel, we show that an OPAL platform with a fixed methylarginine residue can be

83 The carbon inverse opals provide examples of both dielectric and metallic o

84 thermal neutron flux available at the 20 MW OPAL research reactor are described.

85 Both diamond and glassy carbon inverse opals resulted from volume filling.

86 In addition, Opal's programmatic access capability allows our applica

87 ith a tight control over pore sizes, inverse opal scaffolds have found widespread use in biomedical a

88 e highlight the unique advantages of inverse opal scaffolds over their non-uniform counterparts.

89 Inverse opal scaffolds, in contrast, possess uniform pores inher

90 elastomeric photonic crystals termed polymer opals showing extremely strong tunable structural colour

91 D nanostructures in the form of silk inverse opals (SIOs) is reported.

92 is paper presents the Open Air Laboratories (OPAL) Soil and Earthworm Survey as an example of public

93 uito host the functional significance of the opal stop codon in an alphavirus genome.

94 The presence of an opal stop codon upstream of nsP4 nearly doubled (75.5%)

95 These include a novel amino acid use for the opal stop codon, an archaeal-type purine synthesis in Ba

96 codon that does not operate as the canonical opal stop codon.

97 cysteine incorporation occurs in response to opal stop codons and is dependent on the presence of a s

98 Four mutations resulting in opal stop codons were individually engineered into a pla

99 tric matrix (8-9 gap; the so called 'inverse-opal' structure).

100 lf-assembly of well-ordered, porous "inverse opal" structures for optical, electronic, and (bio)chemi

101 n-3 Long-chain polyunsaturated fatty acids (OPAL) Study was registered at www.controlled-trials.com

102 In vitro aminoacylation assays and in vivo opal suppression assays showed that B. subtilis TrpRS (B

103 nucleotide determines whether the endogenous opal suppression pathway competes with co-translational

104 icating the endo-genous tryptophan-inserting opal suppression pathway.

105 ctive assay that couples phage production to opal suppression.

106 P97 protein expressed in an Escherichia coli opal suppressor host and M. hyopneumoniae bound specific

107 clones in a genomic library expressed in an opal suppressor host because of alternate codon usage by

108 orthogonal 21st synthetase-amber, ochre and opal suppressor tRNA pairs including the first report of

109 An opal suppressor tRNA served as a functional probe to exa

110 ransfer RNA (tRNA) synthetase (TrpRS)-mutant opal suppressor tRNA(Trp) (mutRNA(UCA)(Trp)) pair was ge

111 Amber, ochre and opal suppressor tRNAs with a wide range of activities in

112 We show that amber, ochre and opal suppressor tRNAs, derived from Escherichia coli glu

113 We used a La-dependent opal suppressor, tRNASerUGAM, which suppresses ade6-704

114 mics selenocysteine tRNA and may function as opal suppressor.

115 l gene as a reporter, that amber, ochre, and opal suppressors derived from the serine and tyrosine tR

116 s produced when translation terminates at an opal termination codon between nsP3 and nsP4.

117 translational readthrough occurs or when the opal termination codon has been replaced by a sense codo

118 he regulated suppression of amber, ochre and opal termination codons in mammalian cells.

119 these frameshifted sequences contain a UGA (opal) termination codon.

120 r in Escherichia coli to decode amber (TAG), opal (TGA), and four-base (AGGA) codons.

121 ches to each stage yields a new tool we call Opal that on benchmark alignments matches the quality of

122 lids is similar to that of natural U-bearing opals that retain U for millions of years.

123 n nsP3 (positions 386 to 403), and nsP3 537 (opal to Cys; avirulent to virulent), as well as a single

124 the use of Oriented Peptide Array Libraries (OPALs) to methodically dissect the preferred methylation

125 The Opal toolkit currently supports SOAP-based Web service a

126 structed that efficiently suppressed the lac opal U4 mutation in E. coli.

127 Although the frequency with which the opal virus disseminated from the mosquito midgut did not

128 egan earlier in mosquitoes infected with the opal virus.