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1 mate-induced translation is dependent on Arc open reading frame.
2 e, and in the case of protein coding DNA, an open reading frame.
3 nal AUGs at positions 235 and 241 of the NS1 open reading frame.
4 regardless of its position within an mRNA's open reading frame.
5 ong untranslated regions (UTRs) flanking the open reading frame.
6 , oppC, oppD, oppF, and oppA are in the same open reading frame.
7 some of the oriPtRs contain the BCRF1/vIL10 open reading frame.
8 iptional start site located within the bbb23 open reading frame.
9 not affecting translation of the downstream open reading frame.
10 ne, resulting in a frameshift in the cognate open reading frame.
11 ate within the coding region of the opposite open reading frame.
12 s via introduction of a TC tag into the muNS open reading frame.
13 s operational when combined with an upstream open reading frame.
14 is translationally repressed by an upstream open reading frame.
15 ent translation elongation through the viral open reading frame.
16 ond and third in-frame AUG codons in the NS1 open reading frame.
17 encoded by a 3,200-bp genome with only four open reading frames.
18 ribosomal entry sites (IRESs) preceding both open reading frames.
19 aves a clear three nucleotide periodicity in open reading frames.
20 acetyl-CoA carboxylase subunit D (accD)-like open reading frames.
21 d by GC-rich regions and the absence of long open reading frames.
22 and NS1/NEP (Ms and split NS segment [NSs]) open reading frames.
23 ons, are on the other hand likely to disrupt open reading frames.
24 UTR and an intergenic region separating two open reading frames.
25 plicing has the potential to introduce novel open reading frames.
26 enesis and thereby generate mutations in all open reading frames.
27 ases with an exponentially growing number of open reading frames.
28 analyses of strains bearing mutations within open reading frames.
29 h are products of previously uncharacterized open reading frames.
30 esignated clone 7, contained mutations in 16 open reading frames.
31 such as multi k-mer frequencies and relaxed open reading frames.
32 ange from 22.6-33.0 Kbp, consisting of 27-39 open reading frames.
33 e-encoding RNAs, and dynamic use of upstream open reading frames.
34 oligonucleotides (ASOs) that target upstream open reading frames.
35 sence of gene homologs to all 84 known HHV-7 open reading frames.
36 equences, including 2442 translated upstream open reading frames.
37 near the junction of the viral polyprotein (open reading frame 1 [ORF1]) and capsid (ORF2) genes and
38 r; therefore, we evaluated the expression of open reading frame 1 protein (ORF1p), a protein encoded
39 P25K to long interspersed element 1 (LINE-1) open reading frame 1 protein (ORF1p), which contains an
40 recently described aberrant expression of an open reading frame 1 protein, ORF1p, encoded by long int
41 ISKNV-encoded proteins, we found that ISKNV open reading frame 119L (ORF119L) is predicted to encode
43 posi's sarcoma-associated herpesvirus (KSHV) open reading frame 16 (orf16) encodes a viral Bcl-2 (vBc
44 ysis showed that amphoterin-induced gene and open reading frame 2 (Amigo2) was overexpressed in LV12
45 ripts expressing an authentic replicase from open reading frame 2 (ORF2) and a second duplicate nonst
46 ed a panel of nonsynonymous mutations in the open reading frame 2 (ORF2) gene encoding VP1 that arose
47 eactive primer set targeting the overlapping open reading frame 2/3 (ORF2/3) nucleotide sequence of H
48 ion of the interaction interface between the open reading frame 24 (ORF24) and ORF34 vTFs ablated bot
49 232, in the first intron of the chromosome 5 open reading frame 30 (C5orf30) locus, has recently been
50 posi's sarcoma-associated herpesvirus (KSHV) open reading frame 31 (ORF31), ORF24, and ORF34 that is
51 ins are essential for viral growth in vitro (open reading frame 32 [ORF32], ORF59, ORF81, ORF83, ORF9
52 at the viral protein kinase (vPK) encoded by open reading frame 36 (ORF36) of Kaposi's sarcoma-associ
53 EB phosphorylation did not require the viral open reading frame 47 (ORF47) and ORF66 kinases encoded
54 showed that although Nrf2 alone induces the open reading frame 50 (ORF50) promoter, its association
56 ntaneous, tetradecanoyl phorbol acetate-, or open reading frame 50 (ORF50)/replication transactivator
58 eral viral RNAs (polyadenylated nuclear RNA, open reading frame 58 [ORF58], ORF59, T0.7, and ORF17) w
64 in the non-coding region of the Chromosome 9 open-reading frame 72 (C9orf72) gene is the most common
65 ncharacterized gene (C17orf99; chromosome 17 open reading frame 99), that is expressed in bone marrow
66 by altering pre-mRNA splicing to restore an open reading frame, allowing translation of an internall
67 de resolution at the start of most annotated open reading frames although in some cases a downstream
68 demonstrated the translation of alternative open-reading frames (altORFs) in addition to annotated p
70 expressed across an expansion located in an open reading frame and suggests RAN translation may also
71 quence features: TRmIND by the length of the open reading frame and TRmD both by a approximately 60 n
72 proteins, two ribosomal RNAs, three putative open reading frames and 33 transfer RNAs of 19 amino aci
73 ble-stranded DNA genome coding for up to 250 open reading frames and a fully cytoplasmic replication.
74 ature of indel mutations, which create novel open reading frames and a large quantity of mutagenic pe
76 se of the close spacing of approximately 200 open reading frames and extensive transcriptional read-t
77 ensity varies substantially across all known open reading frames and is highest in latency-associated
78 lly been undertaken through the detection of open reading frames and other genomic motifs, supplement
79 ic of this article is the (mis)annotation of open reading frames and premature termination codons.
80 roup of HERV-K elements, still retain intact open reading frames and the capacity to produce certain
81 The indel does not modify the frame of the open reading frame, and it is located eight nucleotides
82 e amino termini of these proteins to the NP1 open reading frame, and splice site mutations that preve
84 or alternative codons occurred mostly within open reading frames, and fewer occurred in untranslated
89 may explain why, despite having lost the E6 open reading frame between 20 and 60 million years ago,
90 not have evolved by tandem duplication of an open reading frame, but rather originated by fusion betw
91 P24), angiopoietin 4 (ANGPT4), chromosome 11 open reading frame (C11orf30/EMSY), and exocyst complex
93 ged in vitro accumulated mutations in the HN open reading frame, causing a dramatic increase in plaqu
94 dentified a novel Dot/Icm substrate-encoding open reading frame (CbuD1884) present in all C. burnetii
95 bioinformatic analysis, we propose that the open reading frame CD0241 encodes a kinase involved in t
96 ubiquitin gene is a unique, highly conserved open reading frame composed solely of tandem repeats, ye
98 species carry a 7.5kb plasmid encoding eight open reading frames conventionally called plasmid glycop
99 d that GC content and the number of upstream open reading frames could play a role in selective trans
101 A viruses, and as a likely consequence, most open reading frames encode multifunctional viral protein
102 script lacking exons 4-7, which restores the open-reading frame, encodes a DNA repair proficient prot
104 nt viruses were generated that contained the open reading frame encoding enhanced green fluorescent p
105 is of this envelope transcript revealed long open reading frames encoding putative surface and transm
108 given non-coding gene because of lacking an open reading frame, especially in polyploidy human cell
109 asite proteins STEVOR (SubTElomeric Variable Open Reading frame) exert changes on GIE deformability.
111 The more than 200 closely spaced annotated open reading frames, extensive transcriptional read-thro
113 translation start site (AUG) but contain an open-reading frame for green fluorescent protein to dete
114 vectors carrying the full-length dystrophin open-reading frame for transduction of human muscle deri
115 In this study, we sequenced FFAR3 and GPR42 open reading frames from 56 individuals and found an une
117 quences has resulted in the determination of open reading frames, identification of gene promoter ele
118 e studied the UL116 gene product, a putative open reading frame identified by in silico analysis and
119 nserted increasing lengths of the dystrophin open reading frame in a foamy virus vector and quantifie
120 cing of the testis-expressed 11 gene (TEX11) open reading frame in blood and semen samples obtained f
121 omolog repressed the translation of the main open reading frame in cis, independent of the sequence o
122 seven amino acid peptide encoded by a short open reading frame in exon 2 of the angiotensin type 1a
123 accessory protein encoded by an alternative open reading frame in PB1 segments of most influenza A v
125 emonstrated that ectopic expression of TIMP2 open reading frame in the highly metastatic HCC cell lin
126 ss to an mRNA, inefficient translation of an open reading frame in the leader region of the Salmonell
127 Here, we sequenced the full gyrA and gyrB open reading frames in 240 multidrug-resistant and exten
128 meliloti phage PhiM12 have a small number of open reading frames in common that appear to encode stru
129 lements have been evolutionary maintained as open reading frames in host genomes for over 40 million
131 ss-induced relief of two inhibitory upstream open reading frames in the 5'-leader of the transcript.
133 ubjects and sequenced the full gyrA and gyrB open reading frames in their respective sputum TB isolat
134 genic mutations predicted to restore BRCA1/2 open reading frames, including two patients with multipl
136 of unknown function, encoded by the YLR290C open reading frame, is also identified as a constituent
137 P1, a small NS protein encoded by the middle open reading frame, is required for the expression of th
138 r, as lncRNAs tend to encode one or multiple open reading frames, it is not trivial to distinguish th
139 ecause this variant does not alter the GFPT1 open reading frame, its pathogenic relevance has not yet
140 demonstrate that expression of RIOK3 (RIght Open reading frame kinase 3) was increased during hypoxi
141 r organisms studied to date have three right open reading frame kinase genes (designated riok-1, riok
142 ction and reveal the mechanism of repressor, open reading frame, kinase (ROK) transcription regulator
145 deletion of uridines to generate functional open reading frames, many of which encode components of
146 he expression of identified and unidentified open reading frames needed to deal with and overcome the
147 onfirmed by GFP accumulation from the second open reading frame of a polycistronic messenger RNA, whi
150 ransmembrane protease, serine 2) gene to the open reading frame of ERG, encoding an ETS family transc
153 ulatory domain and regulation by an upstream open reading frame of Rbp35-dependent TOR signalling pat
156 the susceptible xa23 allele has an identical open reading frame of Xa23 but differs in promoter regio
157 s this systematically, we cloned full-length open reading frames of alternatively spliced transcripts
159 l segments combined in which the overlapping open reading frames of matrix 1 (M1)/M2 for the modified
160 1 (M1)/M2 for the modified M segment and the open reading frames of nonstructural protein 1 (NS1)/nuc
161 peptides not only from precursors encoded in open-reading frames of mRNA transcripts but also cryptic
163 luding the repressive effect of the upstream open reading frames on gene expression and the mutationa
164 d a form of B. burgdorferi in which the ospA open reading frame, on lp54, was replaced with the ospC
165 rdless of context (3'-untranslated region or open reading frame) or measurement type (RNA or protein
166 er from SARS-CoV only in containing an extra open reading frame (ORF) (named ORFX), between ORF6 and
168 reast cancer cells, targeted E-cadherin mRNA open reading frame (ORF) and suppressed E-cadherin prote
170 ed between MneRV2 and RRV26-95, although the open reading frame (ORF) encoding the KSHV ORFK15 homolo
172 Turnip crinkle virus (TCV) coat protein (CP) open reading frame (ORF) has been found to promote inter
174 ate LINE-1 5'UTR contains a primate-specific open reading frame (ORF) in the antisense orientation th
177 yvirus, family Potyviridae) contains a large open reading frame (ORF) of 3,494 codons translatable as
178 is the introduction of a frameshift into the open reading frame (ORF) of the target gene which trunca
183 econd-site mutations in the p38 coat protein open reading frame (ORF) that arose in response to a mut
184 rate that the last 36 nucleotides of the NSs open reading frame (ORF) were needed to ensure the effic
185 Additionally, 594 GENCODE lncRNAs acquire an open reading frame (ORF) when their structure is extende
190 , embedded within the large tegument protein open reading frame (ORF)64, gained the capacity to stimu
191 ome by assessing the ability of nearly every open reading frame (ORF; approximately 5,300 ORFs) to in
194 uence of L1-dsRNA/SsMBV1 comprises two large open reading frames (ORF1 and ORF2), which encode a puta
195 ene cluster, we showed that expression of an open reading frame (orf306) present within the cluster i
196 ochorism and to the presence of the atypical open reading frames (ORFans) F-orf and M-orf, respective
197 volving 6 nucleotides in the overlapping P/C open reading frames (ORFs) (C(Delta170)) or a temperatur
198 alium, which is cotranscribed with two novel open reading frames (ORFs) (termed ORF1 and ORF2 herein)
201 e genomes were 96% similar and contained 217 open reading frames (ORFs) and 220 ORFs, respectively, w
202 ediator occupancy peaks that overlap dubious open reading frames (ORFs) and are likely to include pre
203 iversal library that automatically maintains open reading frames (ORFs) and does not require linkers,
204 led virus genome showed the presence of five open reading frames (ORFs) corresponding to the genes fo
206 me of Bam35, nearly half of the 32 annotated open reading frames (ORFs) have no homologs in databases
207 rganized into operons consisting of discrete open reading frames (ORFs) in a single polycistronic mRN
208 The presence of auxiliary protein-encoding open reading frames (ORFs) in HTLV-3, the latest HTLV to
209 ave been identified with unusually divergent open reading frames (ORFs) in the conserved region of rp
211 ure, 68 substitutions that were localized in open reading frames (ORFs) likely associated with host c
212 ial chromatin remodeler, is recruited to the open reading frames (ORFs) of actively transcribed genes
213 translational repression, the protein coding open reading frames (ORFs) of certain individual mRNAs e
214 ugh extremely weak after translation of long open reading frames (ORFs) on cellular mRNAs, reinitiati
215 ding the first detection of products from 27 open reading frames (ORFs) previously designated "predic
216 iversity leading to the formation of altered open reading frames (ORFs) that appear to be under relax
217 However, MDV carries a number of unique open reading frames (ORFs) that have not yet been invest
218 for 5 species, turned up 22 plasmid-derived open reading frames (ORFs) that showed syntenic and copy
219 omplex of two large proteins encoded by HCMV open reading frames (ORFs) UL47 and UL48 and identifying
220 eotide substitution rates for the individual open reading frames (ORFs) were highest in the regions e
221 ome sequence containing 128 unique predicted open reading frames (ORFs), many of which were most clos
222 LV5 has a 29,767-bp genome with 32 predicted open reading frames (ORFs), YSLV6 has a 24,837-bp genome
227 e library (616 overlapping peptides spanning open reading frames [ORFs] 1-3) was used in interferon-g
230 escens Db11 genome revealed three additional open reading frames predicted to code for serralysin-lik
233 om two separate, nonoverlapping, independent open reading frames represents a useful tool to independ
234 on enhancing factor (PTEF) relieves upstream open reading frame repression and thereby facilitates VA
235 vel of PTEF, and the alleviation of upstream open reading frame repression requires the proteolytic p
236 ered expression of 28% and 17% of H. ducreyi open reading frames, respectively, including genes invol
237 rapy in breast cancer, we performed a kinase open reading frame screen to identify genes that rescue
238 idence has pointed to the existence of small open reading frame (smORF)-encoded microproteins in mamm
243 e comX structural gene, where a unique 69-aa open reading frame, termed XrpA, was encoded in a differ
244 transcript variant lacking a small upstream open reading frame that would otherwise inhibit translat
245 ic RNA genome arrangement, encoding two main open reading frames that are driven by distinct internal
246 long RTC4 transcript contains small upstream open reading frames that prevent translation of the down
247 or efficient translation of mRNAs with short open reading frames that show greater than average trans
248 f P3 fused to Pretty Interesting Potyviridae open reading frame), the two PD-localized potyviral prot
249 e the regulation of translation via upstream open reading frames, the over-reading of stop codons via
250 on our mutant analysis, we revised the rec27 open reading frame: the new start codon is in the previo
252 Sequence analysis of all 41 known ZIKV RNA open reading frames to date indicates that ZIKV has unde
253 nd initiation codon selection by 5' upstream open reading frames, translation initiation factors, and
254 cluding sequence characteristics of putative open reading frames, translation scores based on ribosom
257 resses the translation of the downstream GGP open reading frame under high ascorbate concentration.
259 ntrolled by a single cis-regulatory upstream open reading frame (uORF) in the 5' untranslated regions
260 sttranscriptionally regulated by an upstream open reading frame (uORF) located in its 5' untranslated
261 long 5' UTR of GRN mRNA contains an upstream open reading frame (uORF) that is absent in all shorter
262 is regulation requires a cis-acting upstream open reading frame (uORF) that represses the translation
263 at least one efficiently translated upstream open reading frame (uORF) that represses translation of
266 characterize a complex landscape of upstream open reading frames (uORFs) across 5'-untranslated regio
268 eceptor (AXIIR) mRNA, there are two upstream open reading frames (uORFs) acting in a fail-safe manner
271 as been reported to be regulated by upstream open reading frames (uORFs) in a manner of re-initiation
272 elements (AREs) in their 3'UTR and upstream open reading frames (uORFs) in their 5 UTR than do contr
275 ASOs that bind to mRNA sequences in upstream open reading frames (uORFs) to specifically increase the
276 sion of Kozak sequence composition, upstream open reading frames (uORFs), and secondary structure.
277 sense-mediated decay (NMD) targets, upstream open reading frames (uORFs), canonical ORFs shorter than
282 generate a viral recombinant in which the H5 open reading frame was deleted and replaced with mCherry
283 , one in which the nonstructural protein NSs open reading frame was deleted from the S segment and on
286 n genome was initially annotated, the TP0126 open reading frame was predicted to include a poly(G) tr
287 ation is especially evident near the ends of open reading frames, where we observe accumulation of cl
288 In addition, inactivation of the stm3944 open reading frame, which is located immediately upstrea
290 pathogenic functions of the plasmid-encoded open reading frames, which may motivate further investig
291 91 in the CL strain encodes for the complete open reading frame, while the other one is truncated enc
294 nalysis of the i-leader revealed a potential open reading frame within the leader sequence and the te
296 ypic evaluation of mutants null for specific open reading frames within UL133/8 revealed a role for U
297 a module (loxPint) can be placed anywhere in open reading frames without compromising protein express
298 onal protein, directly translated from small open reading frames (without the involvement of a precur
299 o far uncharacterized mitochondrial protein (open reading frame YDR381C-A) as an important assembly f
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