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1 es of the strand terminating with a 5'-ssDNA overhang.
2 p decreases with increasing length of the 5'-overhang.
3 le to the full stretch of 3' human telomeric overhang.
4 ion of the correct single-stranded telomeric overhang.
5 hange (DeltaR(ct)) is found by extending the overhang.
6 ction of free DNA ends to produce a 3'-ssDNA overhang.
7 nd nasally, frequently with Bruch's membrane overhang.
8 same duplex with a 3'-overhang or without an overhang.
9 and to form 5' mononucleotides and a long 3' overhang.
10 ociation of these proteins from the telomere overhang.
11 another by the absence or presence of a stem overhang.
12 ibutes to the generation/maintenance of this overhang.
13 res terminate in a single-stranded 3' G-rich overhang.
14 e leader-proximal repeat to the prespacer 3' overhang.
15 e interaction between POT1 and the telomeric overhang.
16 ferentiates pre-miRNA species with different overhangs.
17 similarities to hairpins and fixed 5' and 3' overhangs.
18 roduce double-stranded DNA molecules with 5'-overhangs.
19 ds unexpectedly form long 5' single-stranded overhangs.
20 m all dsDNA ends: 5'-overhangs, blunt, or 3'-overhangs.
21 wild-type Metnase effectively cleaves ssDNA overhangs.
22 n which DSB ends are converted into 3'-ssDNA overhangs.
23 es in the enzyme that can generate longer 3' overhangs.
24 es out endonucleolytic cleavage of 5' and 3' overhangs.
25 st G to produce fragments with three-base 5'-overhangs.
26 n of DSBs to generate 3' single-stranded DNA overhangs.
27 and from DNA duplexes with single base pair overhangs.
28 define the steps in the processing of these overhangs.
29 RNA constructs, which retained 5' nucleotide overhangs.
30 d inhibiting unwinding of substrates with 3'-overhangs.
31 ike IDN2 and SGS3, FDM1 binds dsRNAs with 5' overhangs.
32 activity mediated loading of Exo1 onto ssDNA overhangs.
33 es with sufficiently long single-stranded 5' overhangs.
34 R mechanisms that rely on 3' single-stranded overhangs.
35 300 nt of G-rich single-stranded DNA (ssDNA) overhangs.
36 sed by lambda exonuclease, leaving behind 3' overhangs.
37 han with single- or double-stranded DNA with overhangs.
38 duplexes with 5'- and 3'-single-stranded DNA overhangs.
39 r to create classic 19-bp siRNAs with 3'-end overhangs.
40 -base-pair prespacer bearing 4-nucleotide 3' overhangs.
41 RNA duplexes, and for duplexes with short 3' overhangs.
42 ends, including blunt, 5' overhangs, and 3' overhangs.
43 o the target DNAs with different lengths and overhangs.
44 Apollo is required for maintaining telomeric overhangs.
45 a similar substrate containing 5-nucleotide overhangs.
46 ctures compared with linear duplex having 3' overhangs.
47 mulate Artemis activity at hairpins or at 5' overhangs.
48 -POT1 switch on telomeric single-stranded 3' overhangs.
49 ficant unwinding of substrates containing 3' overhangs.
50 3-fold lower compared with duplexes with 5' overhangs.
51 commonly used 19mer with two deoxythymidine overhangs (19merTT) variant performed similarly to canon
52 reaction (PCR) fragment containing a single overhanging 3' A to a plasmid vector containing a 3' T.
55 In contrast, 3'-overhang/3'-overhang and 5'-overhang/5'-overhang templates were processed by resecti
56 blunt/3'-overhang, blunt/5'-overhang, and 3'-overhang/5'-overhang were predominantly repaired with fi
60 ing the detailed structure of the telomere G-overhang and its maintenance will contribute greatly to
62 covalent complex containing a single-strand overhang and then compared them with the same overhang d
63 fork substrates with 3' single-stranded DNA overhangs and also disrupts protein-DNA interactions whi
64 in maintaining newly replicated telomeric 3' overhangs and facilitating the switch from replication p
65 ) binds with nanomolar affinity to the ssDNA overhangs and forms a dimer with another telomere-end bi
66 by promoting unwinding of substrates with 5'-overhangs and inhibiting unwinding of substrates with 3'
68 including human telomeric GQ (with different overhangs and polarities) and GQ formed by thrombin-bind
70 the telomeric C strand, causing extended 3' overhangs and stochastic telomere truncations that could
71 iRNAs by recognizing the presence of 2-nt 3' overhangs and the thermodynamic properties of 2-4 bp on
73 atible ends with blunt/3'-overhang, blunt/5'-overhang, and 3'-overhang/5'-overhang were predominantly
74 of varying the length of the single-stranded overhang, and studied A-form DNA-PNA duplexes to provide
77 elicases, JFH-1 NS3 does not require long 3' overhangs, and it unwinds duplexes that are flanked by o
78 e nucleolytic resection of DNA with 5'-ssDNA overhangs, and that RecQ helicase can initiate resection
80 high-resolution insight into the telomeric G-overhang architecture under essentially physiological co
84 the repeat unit and produce a duplex with 5'-overhangs, are extended using a thermostable archaeal DN
85 p formation does not require a single strand overhang, arguing that both terminal strands insert into
86 d double-stranded DNA that had a 3'-poly(dT) overhang as compared with double-stranded DNA with a 5'-
87 lity of gene 6 protein to remove 5'-terminal overhangs as well as to remove nucleotides from the 5'-t
88 s with the binding stability of BLM to ssDNA overhang, as modulated by the nucleotide state, ionic co
92 -stranded siRNA with at least a 2-nucleotide overhang at one 3' terminus in a dose-dependent manner,
94 assays revealed the presence of a 5'-C-rich overhang at the telomeres of human and mouse chromosomes
97 of C-strand fill-in, whereas the sizes of G-overhangs at leading telomeres remain stable throughout
98 ollo in the generation of 3' single-stranded overhangs at newly replicated leading-strand telomeres t
99 ned by the generation of 3 single-strand DNA overhangs at the break that are initiated by the action
100 Recent evidence for 5'-cytosine (C)-rich overhangs at the telomeres of the nematode Caenorhabditi
102 lease activity on single-stranded DNA and 5'-overhangs, because this 5'-exonuclease is not dependent
104 two adjacently positioned pockets: a 2 nt 3'-overhang-binding pocket within the PAZ domain (3' pocket
105 Moreover, non-compatible ends with blunt/3'-overhang, blunt/5'-overhang, and 3'-overhang/5'-overhang
107 inds forked dsDNA and DNA duplexes with a 3'-overhang but is inactive on blunt-ended dsDNA and 5'-ove
108 bstrates possessing a 3' single-stranded DNA overhang but not of 5' overhangs or blunt-ended DNA frag
109 and resection required the presence of these overhangs but did not require Metnase's DNA cleavage act
110 haped DNA structures having >/=18-nucleotide overhangs but not to a similar substrate containing 5-nu
115 V alone can stimulate Artemis activity on 3' overhangs, but this DNA-PKcs-independent endonuclease ac
116 res the generation of a 3' single-strand DNA overhang by exonuclease activities in a process called D
119 se of subsurface pressure or via creation of overhangs by sublimation, may be a major mass loss proce
121 core, oscillating between the two equivalent overhanging carbonyl groups, coupled to an intermolecula
122 PbOAc exchanging between the two equivalent overhanging carboxylate groups (N-core(up) left arrow ov
123 tion in a bis-strapped porphyrin ligand with overhanging carboxylate groups has been investigated in
124 A bis-strap porphyrin ligand (1), with an overhanging carboxylic acid group on each side of the ma
125 omplex, larger DNA sequence that contains an overhang complementary to the CNA can also be encapsulat
126 ble-stranded DNA with nonpairing (nonsticky) overhangs, confined between two-dimensional (2D) lipid b
127 Artemis at blunt DNA ends is slower than at overhangs, consistent with a requirement for a slow DNA
128 self-complementary 14-mer RNAs (12-bp + 2-nt overhang) containing 2(')-OCH(3) and 2'-OH at their 3' e
130 ALT cells possess excessively long telomeric overhangs derived from telomere elongation processes tha
132 At native telomeres in dna2 mutants, GT-overhangs do clearly elongate during late S phase but ar
136 DSBs affects NHEJ, we made site-specific 5'-overhanging DSBs (5' DSBs) in yeast using an optimized z
140 say, we found that most T. brucei telomere G-overhangs end in 5' TTAGGG 3', while a small portion of
141 By investigations of longer targets with overhangs exposed to the solution, we can demonstrate ap
142 protection involves the insertion of the 3' overhang facilitated by telomere repeat-binding factor 2
143 espect to stimulating Artemis activity at 3' overhangs, favoring the view that these NHEJ proteins ar
144 kness with this approach arises when melting overhanging features, which have no prior melted materia
147 cleavage sites and each of the six expected overhangs formed at nascent termini adjacent to the clea
149 into G-quadruplex arrangements inhibits the overhang from hybridizing with the RNA template of telom
150 NA binding region, DrII is able to remove 3' overhangs from RNA molecules closer to duplexes than do
152 d DNA2, which process DNA ends into 3' ssDNA overhangs; helicases such as BLM, which unwind DNA; and
153 ultispecies coprolite assemblage from a rock overhang in a montane river valley in southern New Zeala
158 employs two restriction enzymes to generate overhangs in opposite orientations to which (single-stra
159 le-stranded DNA breaks to form long 3'-ssDNA overhangs in preparation for recombinational repair is c
162 emonstrated that the PCR enzyme fills the 5'-overhangs in the early cycles, and the product is then u
163 levels, implicating the involvement of 5'-C-overhangs in the HR-dependent pathway of telomere mainte
164 significantly affect the 5' TAGGGT 3'-ending overhangs, indicating that telomerase-mediated telomere
167 These data establish that the telomeric overhang is required for the protection of telomeres fro
172 ivity is most efficient on DNA containing 3' overhangs, is facilitated by an insertion loop and conse
174 her preference for duplex substrates with 5' overhangs, it could also catalyze significant unwinding
180 S3DeltaC7 is independent of the substrate 3'-overhang length, implying that a monomeric form of the p
181 evels exhibit shorter telomeres, increased G overhang levels, and altered levels of non-homologous en
182 1, RAD52, and XRCC3 resulted in changes in C-overhang levels, implicating the involvement of 5'-C-ove
183 st that Drosophila telomeres possess a ssDNA overhang like the other eukaryotes, and that the termini
187 sults suggest that GQ formation of telomeric overhangs may contribute to suppression of DNA damage si
188 urfaces are created by designing an array of overhanging microdisks on a polymer film through two ste
189 f double-stranded (ds) DNA fragments with 3' overhangs mimicking double-strand breaks, and prevents r
192 demonstrate that the character of the two 3'-overhang nucleotides of the guide strand of siRNAs is a
193 gase IV, and PALF, PALF is able to resect 3' overhanging nucleotides and permit XRCC4-DNA ligase IV t
194 s of the hepatitis C virus (HCV) RNA with 3' overhanging nucleotides, masking the 5' terminal sequenc
195 -3', including a 3' terminal single-stranded overhang of 100-200 nucleotides that can fold into quadr
198 e terminal 5'-triphosphate of RNA and the 3'-overhang of DNA results in a stable complex between p58C
200 In addition, we show that a single-stranded overhang of greater than 6 nucleotides is required for e
201 rt the prediction that in the full-length 3' overhang of human telomeres, G-quadruplexes with shortes
202 hat deoxyribonucleotides in the guide strand overhang of siRNAs have a negative impact on maintenance
203 igonucleotide homologous to the 3'-telomeric overhang of telomeres, elicits potent DNA-damage respons
204 tructure derived from the single-stranded 3'-overhang of the telomeric DNA is an attractive strategy
205 ferredoxin-like fold, which recognizes a 3'-overhang of U6 snRNA, and a preceding peptide, which bin
207 tivity at DNA hairpins and at 5'- and 3'-DNA overhangs of duplex DNA, and this endonucleolytic activi
210 3'-PG and 3'-phosphate termini on 1-base 3' overhangs of NCS-C-induced DSBs were readily detected in
214 icase activity required a 3'-single-stranded overhang on the third strand and was dependent on ATP hy
217 electrode side affected the signal more than overhangs on the solution side due to the greater insula
221 in heterodimer, TauF4 is characterized by an overhanging peptide corresponding to the first of the fo
224 sults suggest distinct DSB handling based on overhang polarity that impacts NHEJ kinetics and fidelit
226 actor, binds POT1b and shortens the extended overhangs produced by Exo1, likely through fill-in synth
229 randed DNA and linear duplexes containing 5' overhangs relative to the 3' overhangs but not to blunt-
231 telomere damage signalling, nor in telomere overhang removal, which are critical for telomere fusion
232 break ends generates 3' single-stranded DNA overhangs required for homology-based DNA repair and act
234 er specific to DNA polymerase containing the overhang sequence and the complementary blocker DNA, whi
235 ent target enzymes by simply redesigning the overhang sequence of detection probe, while keeping TaqM
236 can be estimated by the calculator from the overhang sequences or provided by the user from direct e
237 orked DNA, and the terminal 3'-OH of each 3' overhang serves as an attacking nucleophile during integ
238 nteractions between 11 bp sDNA rods with 2-T overhangs set in dramatically, and a novel 2D columnar N
241 of DNA constructs with or without GQ in the overhang shows that GQ unfolding is achieved in 50-70% o
244 cated the Apollo nuclease in maintaining the overhang specifically at those telomeres generated by le
246 strate that the presence and polarity of the overhang structure is a critical determinant of double-s
248 ntially binds synthetic forked DNA or 3'-DNA overhang substrates resembling structures used during HR
251 in close proximity, such as the 3'-telomeric overhang, telomeric DNA bubbles and the D-loop at the ba
252 lly, dephosphorylation of the 5'-overhang/3'-overhang template reduced the efficiency of DNA repair w
253 , 3'-overhang/3'-overhang and 5'-overhang/5'-overhang templates were processed by resection of 3-5 ba
256 ssential for cleaving dsRNA with blunt or 5'-overhanging termini, but not those with 3' overhangs, as
258 end in a short, single-stranded DNA (ssDNA) overhang that is recognized and bound by two telomere pr
259 alian telomeres contain a single-stranded 3' overhang that is thought to mediate telomere protection.
260 uently resected to form long single-stranded overhangs that can be repaired by mutagenic pathways.
262 d TbTR) and TbKu are required for telomere G-overhangs that end in 5' TTAGGG 3' but do not significan
263 by telomerase and resection to produce 3'-GT-overhangs that extend beyond the complementary 5'-CA-ric
265 Ray Exposure ages demonstrate that the cliff overhanging the Chauvet cave has collapsed several times
266 ch to the full length of the human telomeric overhang, the presence of higher-order quadruplex-quadru
267 r suppressed stacking interactions with 10-T overhangs, the volume fraction of sDNA at which the 2D i
268 Although FDM1 and IDN2 bind RNAs with 5' overhangs, their functions in the RdDM pathway remain to
270 estores the canonical end structure (2-nt 3' overhang) through mono-uridylation, thereby promoting mi
271 use cells by evaluating changes in telomeric overhangs throughout the cell cycle and at leading- and
272 amer and thereby bring the end of the G-rich overhang to close proximity to Ag NCs, resulting in a si
274 f roof and gutter hygiene and elimination of overhanging tree branches and other structures where pos
275 or group II pre-miRNAs, which have a 1-nt 3' overhang, TUT7 restores the canonical end structure (2-n
276 of a polymerase bound to a DNA end with a 3' overhang, two metal ions, and an incoming nucleotide but
277 ding an RNA duplex with a single-stranded 5'-overhang versus the same duplex with a 3'-overhang or wi
280 signal enhancement was greater than when the overhang was on the solution side due to the increased t
282 vidual duplex DNA molecules with symmetrical overhangs was carried out by pulling one strand of the d
283 A (pdDNA) constructs with different 5' ssDNA overhangs, we show that BLM localizes in the vicinity of
284 rhang, blunt/5'-overhang, and 3'-overhang/5'-overhang were predominantly repaired with fill-in and li
288 ays only edited DNA when 5' sgRNA nucleotide overhangs were removed, suggesting a novel processing me
289 test if the abasic site is within a short 5' overhang, when this activity is necessary and sufficient
290 ssed DNA end with a 40-nucleotide (nt) ssDNA overhang, where it localized to the ssDNA-dsDNA junction
291 omeres terminate with a single-stranded 3' G overhang, which can be recognized as a DNA damage site b
292 e and facilitate the formation of a 3' ssDNA overhang, which is a necessary intermediate for recombin
293 nded DNA or duplex DNA with a four-base pair overhang, which is consistent with the known structure o
294 ent directions producing single-stranded DNA overhangs, which are potential intermediates for the syn
295 ed to yield long single-stranded DNA (ssDNA) overhangs, which are quickly bound by replication protei
296 led duplexes containing a 5' single-stranded overhang with an excess of unlabeled DNA to initiate the
299 stimulated Artemis to cut near the end of 3' overhangs without the involvement of other NHEJ proteins
300 e advantages enable the fabrication of large overhangs without the use of supports, reduction of the
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