ライフサイエンスコーパス: owl

1 represented with the Web Ontology Language (OWL).

2 only expressed in the Web Ontology Language (OWL).

3 ng optical waveguide lightmode spectroscopy (OWLS).

4 lable from http://purl.obolibrary.org/obo/ro.owl.

5 vised Recovery Plan for the Northern Spotted Owl.

6 es in the Semantic Web formats RDF, RDFS and OWL.

7 is consistent with observations in the barn owl.

8 vailable at http://edamontology.org/EDAM_1.2.owl.

9 e was studied in the auditory system of barn owls.

10 e detectors in the nucleus laminaris of barn owls.

11 ior colliculus of adult male and female barn owls.

12 cated inside the RF in nitrous oxide sedated owls.

13 , increases auditory map plasticity in adult owls.

14 d in the study of sound localization in barn owls.

15 al experience in adult than in juvenile barn owls.

16 ed saliency in the optic tectum (OT) of barn owls.

17 em that underlies sound localization in barn owls.

18 line in survival with age, observed in tawny owls.

19 frequently preserved in the fossil record of owls.

20 perior colliculus in mammals), in awake barn owls.

21 y neurons responses recorded in vivo in barn owls.

22 s an open-source Web application for editing OWL 2 ontologies.

23 species ranging from naked mole rats [1] to owls [2], chimpanzees are the most accomplished tool use

24 We have developed an OWL-2 ontology to describe the intrinsic physical and bi

25 ng optical waveguide lightmode spectroscopy (OWLS); a highly sensitive label-free biosensor technique

26 in auditory localization pathway of the barn owl, a map of auditory space is relayed from the externa

27 we estimate that effects of traffic noise on owls' ability to detect prey reach >120 m from a road, w

28 ts to examine the effect of traffic noise on owls' ability to detect prey.

29 rrelated with behavioral improvements in the owls' ability to strike and capture prey.

30 When using Aber-OWL, access to ontologies and data annotated with them i

31 In contrast, in owls adapting to prisms or readapting to normal conditio

32 s to be different between human "larks" and "owls" (also called "morningness/eveningness types" or "c

33 ears to be realized in the brain of the barn owl, an auditory specialist, and has been assumed to hol

34 The barn owl, an auditory specialist, is a classic model for stud

35 emantic utility, with PRO now represented in OWL and as a SPARQL endpoint.

36 Spotted owl and barred owl detection probabilities were signific

37 OWL format from http://edamontology.org/EDAM.owl and in OBO format from http://edamontology.org/EDAM.

38 between the attentional systems of the barn owl and the rhesus macaque.

39 Recent studies in owls and ferrets seem to have identified the origin and

40 tent with several behavioral observations in owls and may be relevant to other visual features and sp

41 f reproductive data from marked female tawny owls and natural variation in food availability (field v

42 sound source, may be very different to barn owls and to the model proposed by Jeffress.

43 a 27-year study of an avian predator (tawny owl) and its main prey (field vole) collected in Kielder

44 tion formats, such as Web Ontology Language (OWL) and Open Biological and Biomedical Ontologies (OBO)

45 ng optical waveguide lightmode spectroscopy (OWLS) and an indium tin oxide (ITO) substrate, we show t

46 ing exclusively of owls: the Tytonidae (barn owls) and the Strigidae (true owls), united by a suite o

47 es from OBO format to Web Ontology Language (OWL) (and vice versa) that can also be used as a Protege

48 ned in a reptile (gecko), birds (chicken and owl), and mammals (mouse, guinea pig, gerbil, and bat),

49 abolished all spreading activity measured by OWLS, and the number of attached cells was significantly

50 implemented in Java and JavaScript using the OWL API and the Google Web Toolkit.

51 conditions (fewer voles and more goshawks), owls appeared to breed more frequently, but allocated fe

52 Barn owls are capable of great accuracy in detecting the inte

53 When barn owls are raised wearing spectacles that horizontally dis

54 Owls are widespread nocturnal top predators and use prey

55 We found that, in barn owls, at each location there is a frequency range where

56 g air temperature and aridity on a Burrowing Owl (Athene cunicularia) population in the southwestern

57 ad collection of mammalian dung by burrowing owls (Athene cunicularia) and show that they use this du

58 sed by the rattling snake, and (b) burrowing owls (Athene cunicularia) defend themselves against mamm

59 d these predictions using EFPs from the barn owl auditory brainstem where we recorded in nucleus lami

60 ches in the mammalian neocortex and the barn owl auditory localization pathway provide some of the fi

61 ere, we exploit a unique feature of the barn owl auditory localization pathway that permits retrospec

62 oQuery software is fully compatible with all OWL-based ontologies and is available for download (CC-0

63 Owls became slightly more likely to breed as they aged,

64 In the barn owl, both ITD detection and processing in the midbrain a

65 erus and Buteo brachyurus) and two nocturnal owls (Bubo virginianus and Strix varia).

66 ssible to infer the body mass of prehistoric owls by analysing tarsometatarsi, an element that is fre

67 ris (Ipc) from the optic tectum (OT) in barn owls by reversibly blocking excitatory transmission in t

68 re of competitive interactions in the Ipc of owls by using two complementary protocols: in the first

69 ndings give rise to the hypothesis that barn owls, by active scanning of the scene, can induce adapta

70 The owl can discriminate changes in the location of sound so

71 Owls can localize sounds by using either the isomorphic

72 ia)-a significant threat to northern spotted owls-can suppress northern spotted owl responsiveness to

73 e OT were recorded from lightly anesthetized owls confronted with arrays of bars in which one bar (th

74 Aber-OWL consists of an ontology repository, a set of web ser

75 We illustrate which OWL constructs and inferences are kept and lost followin

76 The optic tectum of the barn owl contains a map of auditory space.

77 The optic tectum (OT) of barn owls contains topographic maps of auditory and visual sp

78 the type locality of the upper Maastrichtian Owl Creek Formation, offering an excellent opportunity t

79 phenodiscid shells may have only reached the Owl Creek locality by drifting seaward after death.

80 elopment on a custom built setup enabled the OWLS cuvette to be operated as a 1.5 ml mini-incubator,

81 which has hitherto been generally applied in OWLS data interpretation for adsorbed protein films, fai

82 Anatomical results from these owls demonstrated that the topography of intrinsic OT co

83 were known to nest prior to 1997 and barred owl density was thought to be low.

84 Spotted owl and barred owl detection probabilities were significantly higher fo

85 In barn owls, early experience markedly influences sound localiz

86 work that transforms OWL ontologies into the OWL EL subset, thereby enabling the use of tractable rea

87 (NCBO) (a joint effort of OBO developers and OWL experts) and offers options to ease the task of savi

88 On-wire lithography (OWL) fabricated nanogaps are used as a new testbed to co

89 goshawk abundance appeared to interact with owl food availability to have a delayed effect on recrui

90 Plasticity of these maps has been studied in owls forced to wear prismatic spectacles that shift thei

91 ns is stored in the Vaccine Ontology (VO) in OWL format and can also be exported to FASTA and Excel f

92 atest stable version of EDAM is available in OWL format from http://edamontology.org/EDAM.owl and in

93 .2.0 is available as a file in both DAML and OWL formats at http://mged.sourceforge.net/ontologies/in

94 EXPO in XML and OWL formats is at: http://sourceforge.net/projects/expo/

95 any types of adsorbates, enabling the use of OWL-generated structures as bioactive probes for diagnos

96 ation depended on the amount of resources an owl had already allocated towards reproduction (averagin

97 s (OBO) format to the Web Ontology Language (OWL) has been established.

98 For nanowires, on-wire lithography (OWL) has emerged as a powerful way of synthesizing a seg

99 Barn owls hunt in the dark by using cues from both sight and

100 When the owls hunted live prey, auditory maps shifted substantial

101 are the analytical goodness of the developed OWLS immunosenor with HPLC and enzyme-linked immunosorbe

102 above 0.94) indicating that the competitive OWLS immunosensor has a potential for quick determinatio

103 re measured with the developed and optimized OWLS immunosensor.

104 and/or time-of-day effects between larks and owls in decision-making tasks occur only in RNA-based ch

105 e demonstrate that the brainstem of the barn owl includes a stage of processing apparently devoted to

106 l and critically important behavior for barn owls, increases auditory map plasticity in adult owls.

107 Behavioral studies in barn owls indicate that both the optic tectum (OT) and the au

108 er in normal juveniles than in prism-adapted owls, indicative of declustering.

109 We have developed the Aber-OWL infrastructure that provides reasoning services for

110 Adaptive behavior in young owls is accompanied by a compensating shift in the respo

111 The incubator-equipped OWLS is readily applicable for delicate and long-term st

112 ecting and OV-projecting neurons in the same owl, it was confirmed that neurons in IC project to eith

113 a downloadable tab-delimited file and as an OWL knowledge base.

114 Owls laid larger clutches when food was more abundant.

115 mately, dampened prey cycles would drive our owl local population towards extinction, with winter cli

116 With sound pairs having only envelope cues, owls localized direct sounds preferentially, and neurons

117 It uses the OBO to OWL mapping provided by the National Center for Biomedic

118 in dendritic structure compared to chick and owl may indicate specialization for encoding ITDs at low

119 The barn owl midbrain contains mutually aligned maps of auditory

120 n of a single inhibitory circuit in the barn owl midbrain tegmentum, the nucleus isthmi pars magnocel

121 In the owl midbrain, a map of auditory space is synthesized in

122 alidated by neural responses measured in the owl midbrain.

123 acuity in the auditory space map in the barn owl midbrain.

124 t of primate taxa, including the Argentinean owl monkey (Aotus azarai).

125 er understand this restriction, we expressed owl monkey (Aotus nancymaae) CD4 and CXCR4 in the owl mo

126 stitutions render HIV-1 capable of infecting Owl monkey (OMK) cells that highly restrict HIV-1.

127 he CD4 receptor encoded by permissive Spix's owl monkey alleles.

128 Paradoxically, the barrier to HIV-1 in owl monkey cells is released by capsid mutants or drugs

129 ction of a wild type HIV-1 reporter virus in owl monkey cells.

130 We conclude that the owl monkey cellular restriction machinery recognizes a p

131 MV) species, squirrel monkey CMV (SMCMV) and owl monkey CMV (OMCMV), that infect New World monkeys.

132 ternatively, the loss of color vision in the owl monkey could impact K pathway circuitry earlier in t

133 Here we show that knockdown of owl monkey CypA by RNA interference (RNAi) correlates wi

134 ic arrangements made by M, P, and K axons in owl monkey exhibit more similarities than differences.

135 mall genomic regions were recovered from the owl monkey genome, indicating a higher Alu amplification

136 We also used an owl monkey kidney (OMK) cell assay that is based on time

137 onkey (Aotus nancymaae) CD4 and CXCR4 in the owl monkey kidney cell line, OMK.

138 n in the cat, corticogeniculate axons in the owl monkey maintained topographic innervation in the LGN

139 al orientations than oblique orientations in owl monkey middle temporal visual area (MT), a visual ar

140 we found that some individuals from captive owl monkey populations harbor CD4 alleles that are compa

141 An HIV-1 variant modified to evade the owl monkey restriction factor TRIM-cyp replicated effici

142 similar analysis of restriction mediated by owl monkey TRIM-cyclophilin A (CypA) or human TRIM5alpha

143 n TRIM5alpha, rhesus macaque TRIM5alpha, and owl monkey TRIM-Cyp remained potent in cells depleted of

144 restriction, proteasome inhibition prevented owl monkey TRIM-CypA restriction of HIV-1 reverse transc

145 M5 (TRIM5alpha(rh)) or by the product of the owl monkey TRIM5-cyclophilin A gene fusion (TRIMCyp).

146 re, we demonstrate that heat shock perturbed owl monkey TRIMCyp and rhesus TRIM5alpha-mediated restri

147 s in the representation of central vision in owl monkey V1 was relatively small and inconsistent.

148 tions of biotinylated dextran were made into owl monkey V1, and the resulting labeled axons were reco

149 Other species (e.g., owl monkey) had a similar low density of OMP (+) VSNs as

150 squirrel monkeys) and one nocturnal primate (owl monkey).

151 previously described in the laboratory rat, owl monkey, and squirrel monkey.

152 The owl monkey, Aotus azarae, has developed a fully nocturna

153 re from two prosimian galagos, one New World owl monkey, one Old World macaque monkey, and one baboon

154 in the diurnal monkeys than in the nocturnal owl monkey, perhaps reflecting the importance of color w

155 TRIM-CypA is an owl monkey-specific variant of the retrovirus restrictio

156 ong the same axis as observed in macaque and owl monkey.

157 rtion of a paralogous Alu Sq sequence in the owl monkey.

158 D4 receptors encoded by two other species of owl monkeys (Aotus azarae and Aotus nancymaae) also serv

159 the middle temporal crescent area (MT(C)) in owl monkeys (Aotus trivirgatus), squirrel monkeys (Saimi

160 me, but not all, CD4 alleles found in Spix's owl monkeys (Aotus vociferans) encode functional recepto

161 Remarkably, in Owl monkeys (omk), a cyclophilin A (CypA) cDNA has been

162 V2 organization in owl monkeys also appears similar to that of other simian

163 usion with TRIM5 that is unique to New World owl monkeys also targets HIV-1 CA, but this interaction

164 ounts for post-entry restriction of HIV-1 in owl monkeys and blocks HIV-1 infection when transferred

165 al CD4 alleles in a colony of captive Spix's owl monkeys and found that 88% of surveyed individuals a

166 ually evoked activity in MT in two primates, owl monkeys and galagos, where MT is exposed on the brai

167 visual area (MT) was determined in six adult owl monkeys and one adult marmoset 69 d to 10 months aft

168 ggests that, if AVPR1A modulates behavior in owl monkeys and other neotropical primates, it does so i

169 00-electrode array and compared results from owl monkeys and squirrel monkeys 5-10 weeks after lesion

170 IEGs, we not only revealed apparent ODCs in owl monkeys but also discovered a number of unique featu

171 M, P, and K axons were labeled in adult owl monkeys by means of injections of wheat germ aggluti

172 tes, the lateral geniculate nucleus (LGN) of owl monkeys contains three anatomically and physiologica

173 Among New World primates, only owl monkeys exhibit post-entry restriction of HIV-1.

174 Our data indicate that HIV-1 replication in owl monkeys is not restricted at entry but can be limite

175 Adult owl monkeys learned to discriminate tones higher than a

176 , we report a series of experiments in which owl monkeys performed reaching movements guided by spati

177 to visual stimuli in extrastriate cortex of owl monkeys provided evidence for the dorsal half of the

178 ndicating a higher Alu amplification rate in owl monkeys relative to many other primates.

179 Finally, V3 of owl monkeys shows a compartmental organization for orien

180 Adult owl monkeys were trained to detect an increase in the en

181 ving branches (e.g. humans, macaque monkeys, owl monkeys) is difficult for several reasons.

182 of such connections in New World marmosets, owl monkeys, and squirrel monkeys.

183 eral sulcus and posterior parietal cortex of owl monkeys, galagos, and macaques help identify areas t

184 New World owl monkeys, Old World macaque monkeys, and galagos shar

185 brain sections from two macaque monkeys, two owl monkeys, two squirrel monkeys, and three galagos tha

186 VPR1A on the evolution of social behavior in owl monkeys, we sequenced this locus in a wild populatio

187 well developed in nocturnal primates such as owl monkeys, which are likely to be color blind.

188 n one hemisphere of each of two anesthetized owl monkeys.

189 ary somatosensory cortex of two anesthetized owl monkeys.

190 al (PMD) and ventral (PMV) premotor areas of owl monkeys.

191 tic tract were also observed in squirrel and owl monkeys.

192 pper visual quadrant) of titi, squirrel, and owl monkeys.

193 ion (MI) to identify ODCs in V1 of New World owl monkeys.

194 that lead to the reorganization of the barn owl NL take place during embryonic development, shortly

195 be a specialization for enabling neurons in owl NM to transmit high-frequency temporal information w

196 oding in the two cochlear nuclei of the barn owl, nucleus angularis (NA) and nucleus magnocellularis

197 Northern spotted owl occupancy is typically assessed by eliciting their r

198 valuate EL Vira, a framework that transforms OWL ontologies into the OWL EL subset, thereby enabling

199 The Protege-OWL ontology editing tool provides a query facility that

200 OWL ontology http://www.bioinf.man.ac.uk/phosphabase myG

201 omic Ontology Knowledge Base) is based on an OWL ontology that represents current knowledge linking m

202 atterns of neural population activity in the owl optic tectum (OT) categorize stimuli based on their

203 In control owls or prism-adapted owls, which experience small instr

204 ontrol area on sensory responsiveness in the owl OT are strikingly similar to the space-specific regu

205 Detection dogs (Canis familiaris) located owl pellets accumulated under roost sites, within search

206 rticipants with advanced (larks) or delayed (owls) phases.

207 In juvenile owls, plasticity in the OT increased as plasticity in th

208 Owl population size and immigration were unrelated to go

209 The actual changes in owl population size and structure observed during goshaw

210 The overall impact on owl population size varied by up to 50%, depending on th

211 In the OWL protocol presented here, multisegmented nanowires ar

212 Aber-OWL provides a framework for automatically accessing inf

213 Space representation in owls provides a useful example for discussion of place a

214 The Web Ontology Language (OWL) provides a sophisticated language for building comp

215 Although juvenile owls readily acquire alternative maps of auditory space

216 sis of prelearned and postlearned circuitry: owls reared wearing prismatic spectacles develop an adap

217 Barn owls reared with horizontally displacing prismatic spect

218 e control circuitry in the forebrain of barn owls regulates the gain of midbrain auditory responses i

219 allows end users to work directly with this OWL representation of OBO format ontologies.

220 tor abundance) had the greatest influence on owl reproduction.

221 n extrinsic conditions, which indicates that owl reproductive decisions were shaped by a complex seri

222 (which accounted for 83% of the variation in owl reproductive success).

223 and intrinsic factors interact to influence owl reproductive traits (breeding propensity, clutch siz

224 ing of the position and overall width of the OWLS resonant peaks.

225 n spotted owls-can suppress northern spotted owl responsiveness to vocalization surveys and hence the

226 The owl roost fauna includes Rallus undescribed sp. (extinct

227 ledge in Sawmill Sink is a Late Pleistocene owl roost that features lizards (one species), snakes (t

228 rocess in the auditory space map of the barn owl's (Tyto alba) inferior colliculus using two spatiall

229 We show that this change predicts the owl's ability to detect a change in source location.

230 one and noise stimuli in neurons of the barn owl's auditory arcopallium, a nucleus at the endpoint of

231 At first the developing owl's auditory brainstem exhibits morphology reminiscent

232 ences neuronal responses and behavior in the owl's auditory system.

233 Later, the two systems diverge, and the owl's brainstem auditory nuclei undergo a secondary morp

234 remarkable similarity between the burrowing owl's defensive hiss and the rattlesnake's rattling refl

235 The owl's external nucleus of the inferior colliculus (ICx)

236 vestigated these questions in neurons of the owl's external nucleus of the inferior colliculus, where

237 microstimulating a gaze-control area in the owl's forebrain, the arcopallial gaze fields (AGFs), on

238 Because of the shape of the owl's head, these cues vary with frequency in a manner s

239 Space-specific neurons in the barn owl's inferior colliculus have spatial receptive fields

240 Space-specific neurons in the owl's inferior colliculus have spatial receptive fields

241 Space-specific neurons in the owl's inferior colliculus respond only to a sound coming

242 Auditory space-specific neurons in the owl's inferior colliculus selectively respond to the dir

243 We show how the owl's ITD map can emerge from a combined action of homos

244 A cholinergic nucleus in the owl's midbrain exhibits functional properties that sugge

245 Neurons in the owl's midbrain show shifting receptive fields for moving

246 ency tuning of space-specific neurons in the owl's midbrain varies with their preferred sound locatio

247 itivity and gain of sensory responses in the owl's optic tectum (OT).

248 t neurons in the retinotopic map of the barn owl's optic tectum specifically adapt to the common orie

249 In this study, we used the barn owl's sound localization system to address this question

250 encing the population readout commanding the owl's sound-orienting behavior.

251 across single neurons are not unique to the owl's space-specific neurons but occur in mammalian visu

252 Thus, frequency tuning in the owl's space-specific neurons reflects a higher-order fea

253 s appetitive (chick silhouette) to aversive (owl silhouette) cues.

254 In the barn owl, spatial auditory information is conveyed to the opt

255 n a ventromedial to dorsolateral sequence in owl, squirrel, and macaque monkeys, but an altered arran

256 auditory nerve fiber responses for the barn owl strengthens the notion that most OAE delay can be at

257 Owls (Strigiformes) represent a fascinating group of bir

258 federal actions to conserve northern spotted owl (Strix occidentalis caurina) habitat are largely ini

259 Using recoveries of ringed tawny owls (Strix aluco) predated by 'superpredators', norther

260 However, proximity of barred owls (Strix varia)-a significant threat to northern spot

261 ponses by gaze control circuitry in the barn owl suggests that the central nervous system uses a comm

262 f queries with the human-readable Manchester OWL syntax, with syntax checking and entity label lookup

263 , we demonstrate that OT neurons in the barn owl systematically encode the relative strengths of simu

264 Optical waveguide lightmode spectroscopy (OWLS) technique has been applied to label-free detection

265 elation analysis, we demonstrate in the barn owl that the relationship between the spectral tuning an

266 al time differences (ITDs), in juvenile barn owls that experience chronic abnormal hearing.

267 In owls that experienced prisms beginning late in the juven

268 Juvenile owls that learn new, abnormal associations between audit

269 We tested in barn owls the hypothesis that an ongoing delay, equivalent to

270 We found that, in the barn owl, the Ipc responds to auditory as well as to visual s

271 In the barn owl, the ITD is processed in a dedicated neural pathway

272 sponses and a demonstration that in the barn owl, the result is that expected by theory.

273 D is detected in the auditory system of barn owls, the posterior part of the lateral lemniscus (LLDp)

274 In barn owls, the visual system is important in teaching the aud

275 of raptorial birds consisting exclusively of owls: the Tytonidae (barn owls) and the Strigidae (true

276 For spotted owls, this difference increased with number of site visi

277 In barn owls, this process takes place in the external nucleus o

278 anatomy using an ontology language, such as OWL, thus enabling future work on reasoning about the Mo

279 In addition, we show that one can use OWL to rapidly characterize a MTJ and optimize gap size

280 in this pathway has been induced by exposing owls to prismatic spectacles that cause a large, horizon

281 onitoring; demonstrating the capabilities of OWLS to sensitively monitor the adhesion properties of i

282 mpare these results with those from the barn owl (Tyto alba) and the domestic chick (Gallus gallus).

283 OAE) otoacoustic emissions from a bird (barn owl, Tyto alba) and a lizard (green anole, Anolis caroli

284 ytonidae (barn owls) and the Strigidae (true owls), united by a suite of adaptations aiding a keen pr

285 The nocturnality of owls, unusual within birds, has favored an exceptional v

286 ern spotted and barred owl without requiring owl vocalization.

287 Mean detection probability for barred owls was 20.1% for dog surveys and 7.3% for vocal survey

288 Predation of juvenile owls was disproportionately high.

289 et/ultraviolet-sensitive opsin (SWS1) in all owls we studied, but two other color vision genes, the r

290 detection probabilities of northern spotted owls were 29% after session 1, 62% after session 2, and

291 When owls were breeding in territories less exposed to goshaw

292 Two groups of naive adult owls were fit with prisms.

293 Owls were fitted with prismatic or control spectacles an

294 iple times in an area where northern spotted owls were known to nest prior to 1997 and barred owl den

295 tive selection for low-light vision genes in owls, which contributes to their remarkable nocturnal vi

296 In control owls or prism-adapted owls, which experience small instructive signals, the fr

297 Raising young barn owls with a prismatic displacement of the visual field l

298 ed towards reproduction (averaging 87.7% for owls with clutches of 1-2 eggs compared to 97.5% for owl

299 h clutches of 1-2 eggs compared to 97.5% for owls with clutches of 4-6 eggs).

300 ccupancy of both northern spotted and barred owl without requiring owl vocalization.