ライフサイエンスコーパス: pair-wise

1 The pair-wise agreement between clinicians and PLR(TD) was s

2 ding kinetics of 23 single and 126 ECD1-ECD2 pair-wise alanine mutations was measured.

3 sers can upload the standard BLAST output in pair-wise alignment format as input to the web server (i

4 h and consensus logos to motif discovery and pair-wise alignment.

5 , we show that multi-sequence (as opposed to pair-wise) alignment methods are substantially better at

6 th T-Coffee we pre-process a data set of all pair-wise alignments between the sequences.

7 lly conserved ungapped blocks in genome-wide pair-wise alignments of recently completed species of Dr

8 h by using a combination of local and global pair-wise alignments to generate the library.

9 on-exonic sequences that are not captured in pair-wise alignments, thus illustrating the importance o

10 vide graphic representation of complex BLAST pair-wise alignments.

11 , with diverse architectures, for evaluating pair-wise and iterative sequence similarity searches.

12 captures the most neighboring SNPs (through pair-wise and multiple-marker LD) is selected as a tag S

13 ustomization and new structure alerts; (iii) pair-wise and representative protein structure alignment

14 ) of single-herbicide modes of action and to pair-wise and three-way mixtures between different herbi

15 ts using three methods: (i) mean-field, (ii) pair-wise, and (iii) one-hole approximations.

16 nsional scaling on a data matrix composed of pair-wise angular distances for multiple phi-Psi values

17 The pair-wise approximation performs better in the transient

18 The mean-field and pair-wise approximations give indistinguishable asymptot

19 In addition, we demonstrate that pair-wise associations between miRNAs can be used to gro

20 Furthermore, we sought to examine pair-wise associations of particular genetic alterations

21 A continuum of alleles model with pair-wise AxA epistasis is proposed and its transmission

22 found 390 examples of spatially constrained pair-wise binding, including such novel pairs as c-Fos:c

23 In contrast, any pair-wise chimera of the three mutants fails to form spo

24 nologies enable a genome-wide measurement of pair-wise chromatin interaction.

25 Genome-wide analysis of pair-wise chromatin interactions using chromatin conform

26 By performing immunoprecipitations after pair-wise coexpression in Sf9 cells, we show that Dgp71W

27 MA core, were replaced individually or in a pair-wise combination with the more hydrophobic phenylal

28 B4(Rep) and CP(Rep)), were mixed in all four pair-wise combinations and infiltrated to Nicotiana bent

29 mentioned proteins either individually or in pair-wise combinations caused karyotype changes as revea

30 We tested a spectrum of pair-wise combinations of cognate and noncognate Mtb tox

31 Pair-wise combinations of markers identified EGFRvIII an

32 kill target cells by engagement of specific, pair-wise combinations of receptors.

33 dily discriminate between the members of all pair-wise combinations of the tested isoforms.

34 he localization patterns of dimers formed by pair-wise combinations of three different beta subunits

35 mediated by taste cells that express one or pair-wise combinations of three G protein coupled recept

36 vity based on the individual components, all pair-wise combinations, and the composite of the three c

37 randed DNA template and generate millions of pair-wise combinations.

38 Analyses were by intention to treat, both by pair-wise community-level comparisons and by child-level

39 In a pair wise comparison of the generated mouse MSDK librari

40 ct subgroups with different risks of PCSM in pair-wise comparison (p < 0.0001).

41 Pair-wise comparison analyses (between individual k-mers

42 r in a certain subtype of tumors through the pair-wise comparison and by hierarchical clustering anal

43 local qualities of a pool of models using a pair-wise comparison approach.

44 r an observed change in gene expression in a pair-wise comparison is significant.

45 with 1.5 for placebo (P < or = .05 for each pair-wise comparison of a linaclotide dose to placebo).

46 Intent-to-treat pair-wise comparison of ABMT with CT, CT with CBMT, and

47 Using pair-wise comparison of aligned nucleotide sequences of

48 tances showed a median distance of 0.603 for pair-wise comparison of fragments indicating significant

49 Through the pair-wise comparison of normal and DCIS SAGE libraries,

50 A direct pair-wise comparison of PAM4 and CA19-9 immunoassays for

51 Pair-wise comparison of Phi(st) values derived from AMOV

52 A pair-wise comparison of the experimental and control ser

53 By using distance matrices for the pair-wise comparison of these 112 temporal gene expressi

54 Pair-wise comparison of three experimental conditions wa

55 Post-hoc pair-wise comparison revealed increased frontocentral sl

56 ntire current PDB release with T-Server, and pair-wise comparison using the TOPOFIT method through th

57 ty and death differed significantly for each pair-wise comparison.

58 e significant differences in PhiST values in pair wise comparisons between LCI and LSI.

59 Pair-wise comparisons between groups were conducted by S

60 , most comparative sequencing has focused on pair-wise comparisons between human and a limited number

61 to compute the matrix, first all-against-all pair-wise comparisons between protein sequences are comp

62 icroarray data for ten time points with nine pair-wise comparisons during fruit development and ripen

63 the Roundup repository contains all possible pair-wise comparisons for over 250 genomes, including 32

64 Human-mouse pair-wise comparisons have limited utility for identifyi

65 Using pair-wise comparisons in breast DCIS, we found higher pr

66 nofluorescence colocalization, we found that pair-wise comparisons of 15 angiogenic-relevant alpha-gr

67 In pair-wise comparisons of anti-tumor necrosis factor agen

68 Pair-wise comparisons of hospital quality were performed

69 an compare an unlimited number of maps, view pair-wise comparisons of known correspondences, and sear

70 Age was log transformed, and pair-wise comparisons of means were made.

71 However, pair-wise comparisons of telomere dynamics between NF an

72 Using pair-wise comparisons of tuber-related tissues, we were

73 For each parameter, pair-wise comparisons were performed using the mixed mod

74 ectively, analysis of variance, P < 0.05 for pair-wise comparisons).

75 4.7% [CI, 62.5% to 67.0%]; P < 0.001 for all pair-wise comparisons).

76 ss the 4 arms by 1-way ANCOVA (P = 0.02); by pair-wise comparisons, only rhGH (decreasing SI; P = 0.0

77 d from 30% per Brock to 71% per CTCAEv3 (all pair-wise comparisons, P < .01).

78 ring across the three groups and verified by pair-wise comparisons, the MSI-H group was associated wi

79 Besides common pair-wise comparisons, we consider a few reasonable stat

80 ge r.m.s.d., for invariant Trp and Cys, four pair-wise comparisons,=1.2 A) but less similar to the fi

81 se data were further processed with post-hoc pair-wise comparisons.

82 s one-way analysis of variance with post hoc pair-wise comparisons.

83 Pair-wise conditional association tests showed rs1800925

84 ally structured ecological networks in which pair-wise consumer-resource interactions allometrically

85 ted QL9 and dEV8 peptide antigens, in unique pair-wise contacts, resulting in greater structural comp

86 Cell, Stewart-Ornstein et al. use systematic pair-wise correlation analysis of expression noise in a

87 Comprehensive pair-wise correlation and expression level profiles are

88 Finally, pair-wise correlations between intraneuronal percentage

89 Furthermore, there were more strong pair-wise correlations of metabolite abundance in transg

90 Comprehensive pair-wise correlations were calculated between gene expr

91 ing approach were used to identify features (pair-wise correlations) that discriminated patients with

92 via singular value decomposition to extract pair-wise cosine values between the term (keyword) and m

93 in HapMap CEU) compared to its conventional pair-wise counterpart, when conditioning on a fixed tag

94 These pair-wise couplings can be identified from a quantity we

95 First, within a protein, pair-wise couplings exist that define the magnitude and

96 onger and shorter time scales and found that pair-wise cross-correlation was predominantly short term

97 h genetically encoded photo-crosslinkers and pair-wise crosslinking revealed distinct footprints of a

98 Finally, by calculating a pair-wise decomposition of interactions, interaction pat

99 parts: the first part identifies significant pair-wise dependencies from the given binary matrix usin

100 existing theory relates strain hardening to pair-wise dislocation reactions in which two intersectin

101 e in spatial position (sigma(2)<15 m(2)) and pair-wise dispersal frequencies (4 Nm < 25 for plots sep

102 We found significant correlations between pair-wise divergence of viral sequences and HLA class I

103 Despite low pair-wise diversity among isolates, the number of polymo

104 Total and pair-wise diversity was higher near the centromeres and

105 Some of the pair-wise domain combinations that are highly duplicated

106 Four reviewers evaluated pair-wise each study.

107 f the methods in detecting LAT was evaluated pair-wise (eg, B-LATPeak versus B-LATOnset).

108 Second, in addition to the pair-wise energetic coupling between residues, there exi

109 ected that correspond to previously observed pair-wise energetic couplings.

110 in interacts with two or more neighbors, the pair-wise energies are even less.

111 predicted to be equal to the variance of the pair-wise epistatic effects.

112 false positive rate (FPR) in the mapping of pair-wise epistatic quantitative trait loci (QTL).

113 re consisting of 112 genes organized into 80 pair-wise expression comparisons.

114 Although coexpression analysis via pair-wise expression correlation is popularly used to el

115 urrents of the nicotinic receptors formed by pair-wise expression of the rat alpha2, alpha3, or alpha

116 from neuroblasts that generate neurons in a pair-wise fashion, with the two daughters providing the

117 M) with linear filter feature selection used pair-wise FC as features to predict the emotional expres

118 A cluster analysis was performed on pair-wise FST values among pools including seven pools t

119 es and genetic loci to minimize intersecting pair-wise gene connections.

120 Furthermore, popular pair-wise gene evaluation methods, e.g. TSP and TSG, are

121 a supervised learning methodology to predict pair-wise gene functional similarity from multiplex gene

122 a supervised learning methodology to predict pair-wise gene functional similarity from multiplex gene

123 Y) and doublets are helpless for discovering pair-wise gene interactions, our approach can discover t

124 Implicated Loci (GRAIL), to identify whether pair-wise gene relationships defined using PubMed text s

125 This paper extends an automated pair-wise genome comparison technique used to identify o

126 o probe this underexplored area through full pair-wise genome scans and conventional GWAS in diastoli

127 Single and pair-wise global quality assessment software is also ava

128 Pair-wise glutathione S-transferase pull-down assay show

129 Pair-wise group comparisons showed that the before anima

130 To summarise pair-wise group differences, we report the area under th

131 sis and logistic regression for all possible pair-wise HLA combinations.

132 All pair-wise HRT-genotype and BCP-genotype interactions wer

133 wise IBD sharing can be constructed based on pair-wise IBD relationships.

134 ated with alignment characteristics, such as pair-wise identity and the number of sequences in the al

135 Pair-wise inter- and intraobserver agreement was moderat

136 Pair-wise inter-group diagnostic separation was signific

137 ntact distance and orientation in evaluating pair-wise inter-residue interactions.

138 ty, and it only depends on the extent of the pair-wise interaction between different types of molecul

139 tatic genetic model should include potential pair-wise interaction effects of all loci.

140 o-mutant cycle analysis was used to estimate pair-wise interaction free energies for a pair of charge

141 a number of new base triples not detected by pair-wise interaction statistics within the rRNA molecul

142 ting of seven genera as nodes and all of its pair-wise interactions among the bacteria are facilitati

143 /Lif1, our results have revealed a series of pair-wise interactions among the factors that complete t

144 irregular zigzag-folded fiber with dominant pair-wise interactions between nucleosomes i and i +/- 4

145 we carry out a detailed study of stabilizing pair-wise interactions between the positively charged ly

146 ions and by analyzing the effects of STDP on pair-wise interactions of neurons.

147 that a regulation mechanism based on simple pair-wise interactions through a common stomach is a pla

148 g. TSP and TSG, are helpless for discovering pair-wise interactions.

149 l to or better than that obtained with film (pair-wise interreader kappa for digital images ranged fr

150 mprehensively determine whether simultaneous pair-wise knockdown of BBS genes reveals genetic interac

151 lease 21, our algorithm outperforms standard pair-wise LD approach in several aspects.

152 typed in order to derive haplotypes, and the pair-wise LD between SNPs was investigated in 600 haplot

153 lyzed to produce blocks of markers in strong pair-wise LD.

154 For each pair-wise lesion type comparison, linear discriminant an

155 Analysis of pair-wise linkage disequilibrium (LD) of the five regula

156 uter programs are introduced which calculate pair-wise linkage disequilibrium statistics and conduct

157 Consecutive pair-wise marker linkage disequilibrium was not strictly

158 We recorded the following pair-wise mean difference in change in IBDQ-B score betw

159 We did pair-wise meta-analyses using the random-effects model a

160 le to methodological risks than conventional pair-wise meta-analysis.

161 ores generated from our machine learning and pair-wise methods have an average per-target correlation

162 In contrast, pair-wise mixtures of separately transcribed plasmids ca

163 The pair-wise model has been developed to include both direc

164 ed or 'hidden' SNPs being detected (having a pair-wise or haplotype r2 with a set of tagging SNPs ove

165 ition, biophysical variability alone reduced pair-wise output spike correlations to low levels.

166 d validated the roles of 614 cell genes, but pair-wise overlap among the four gene lists was only 3%

167 The pair-wise overlap of these enriched-category lists was h

168 peak clustering method and are built into a pair-wise peak similarity score function.

169 Pair-wise Pearson's and polychoric correlations were cal

170 ptor-based Docking algorithm), is based on a pair wise protein docking prediction algorithm, LZerD, w

171 Out of 320 pair-wise protein-protein interaction assays done using

172 gorithms--one haplotype r2-based method, one pair-wise r2-based method and one method which was based

173 The basic element, the pair-wise relative contact, is constructed from a sequen

174 ure the complexity of protein packing, these pair-wise relative contacts can be superimposed around a

175 Furthermore, these pair-wise relative contacts correlate well with sequence

176 in analyzing protein structure, we used the pair-wise relative contacts to analyze two sets of prote

177 perfamily structure set produced 1266 unique pair-wise relative contacts, whereas the family structur

178 the family structure subset gave 1001 unique pair-wise relative contacts.

179 Pair-wise residue-residue contacts in proteins can be pr

180 Nonetheless, the logistics of pair-wise screening has resulted in a cumbersome and inc

181 n of Y2H that eliminates the requirement for pair-wise screening.

182 We use a semi-global pair-wise sequence alignment method to obtain sequence m

183 the region of interest or examining the raw pair-wise sequence alignment.

184 eic acid sequence searches, (2) multiple and pair-wise sequence alignments, (3) gene feature searches

185 entally, most of which are not detectable by pair-wise sequence comparisons alone.

186 The clustering is based on analysis of all pair-wise sequence comparisons between proteins using th

187 ondrial genome within E. propertius (over 4% pair-wise sequence divergence) but no such differentiati

188 inally related at best in each pair (average pair-wise sequence identity = 13%).

189 quence relationship is undetectable (average pair-wise sequence identity = 8%).

190 8 TIGR Gene Indices, we used high-stringency pair-wise sequence searches and a reflexive, transitive

191 ction accuracy values are independent of the pair-wise sequence similarities within each of the align

192 The difference between total and pair-wise SFP diversity is a relative measure contrastin

193 head-to-tail dimer, which is stabilized via pair-wise shape and charge complementarity.

194 Pair-wise similarities for both FV and for HHI were deri

195 Implicit pair-wise similarity judgments were collected by using a

196 Using pair-wise single-nucleotide polymorphism distances as a

197 nalyzed how the strength of 254,032 possible pair-wise species interactions depended on 90 stochastic

198 of sequence profiles derived from exhaustive pair-wise structural alignments for local structures wit

199 ting set of 1421 protein pairs, of which the pair-wise structures are similar (RMSD< approximately 4A

200 We constructed matrices of pair-wise substitutions in mid-acceptor stem at nt 3/70

201 persion van der Waals-London forces based on pair-wise summation of dipole-dipole interactions across

202 eractions, our approach can discover typical pair-wise synergic genes efficiently.

203 Several efforts to discover pair-wise synergy have been made based on the informatio

204 MIC(X1; X2; Y) is employed to detect pair-wise synergy in simulation and cancer microarray da

205 ial analysis of variance followed by posthoc pair-wise testing.

206 igen (TCR) alpha chain V-genes were compared pair-wise, the numbers of nucleotide differences showed

207 First, IRON normalization occurs pair-wise, thereby avoiding the need for all chips to be

208 ng chi(2) tests of independence and compared pair- wise using a binomial test of proportions.

209 Pair-wise voxel-based analyses were used to define globa